Publication
Publications
Papers with Peer Review
40) Uji K, Ishikawa A, Shin K-C, Tayasu I, and Kitano J. Strontium isotope analysis of otoliths reveals differences in the habitat salinity among three sympatric stickleback species of genus Pungitius. Ecology and Evolution 13: e10463 (2023) .
39) Ishikawa A*, Yamanouchi S, Iwasaki W, and Kitano J. Convergent copy number increase of genes associated with freshwater colonisation in fishes. Philosophical Transactions of the Royal Society B: Biological Sciences 377: 1855 (2022).
38) Yoshitake K, Ishikawa A, Yonezawa R, Kinoshita S, Kitano J, and Asakawa S. Construction of a chromosome-level Japanese stickleback species genome using ultra-dense linkage analysis with single-cell sperm sequencing. NAR Genomics and Bioinformatics 4 (2):Iqac 026 (2022).
37) Ishikawa A*, Stuart YE, Bolnick DI, Kitano J. Copy number variation of a fatty acid desaturase gene Fads2 associated with ecological divergence in freshwater stickleback populations. Biology Letters 17(8): 20210204 (2021).
36) Twining C, Bernhardt J, Derry A, Cameron H, Ishikawa A, Kabeya N, Kainz M, Kitano J, Kowarik C, Ladd SN, Leal M, Scharnweber K, Shipley J, and Matthews B. The evolutionary ecology of fatty-acid variation: implications for consumer adaptation and diversification. Ecology Letters 24: 1709-1731 (2021).
35) Kakioka R, Kume M, Ishikawa A, Ansai S, Hosoki TK, Yamasaki YY, Nagano AJ, Toyoda A, and Kitano J. Genetic basis for variation in the number of cephalic pores in a hybrid zone between closely related species of gobies, Gymnogobius breunigii and Gymnogobius castaneus. Biological Journal of the Linnean Society 133 (1) 143-154 (2021).
34) Ravinet M, Kume M, Ishikawa A, and Kitano J. Patterns of genomic divergence and introgression between Japanese stickleback species with overlapping breeding habitats. Journal of Evolutionary Biology 34:114-127 (2020).
33) Kakioka R, Mori S, Kokita T, Hosoki TK, Nagano AJ, Ishikawa A, Kume M, Toyoda A, and Kitano J. Multiple waves of freshwater colonisation of the three-spined stickleback in the Japanese Archipelago. BMC Evolutionary Biology 20: 143 (2020).
32) Kitano J, Kakioka R, Ishikawa A, Toyoda A, and Kusakabe M. Differences in the contributions of sex-linkage and androgen regulation to sex-biased gene expression in juvenile and adult sticklebacks. Journal of Evolutionary Biology 33 (8): 1129-1138 (2020).
31) Ishikawa A* and Kitano J. Diversity in reproductive seasonality in the three-spined stickleback, Gasterosteus aculeatus. Journal of Experimental Biology 223: jeb208975 (2020).
30) Ishikawa A, Kabeya N, Ikeya K, Kakioka R, Cech JN, Osada N, Leal MC, Inoue J, Kume M, Toyoda A, Tezuka A, Nagano AJ, Yamasaki YY, Suzuki Y, Kokita T, Takahashi H, Lucek K, Marques D, Takehana Y, Naruse K, Mori S, Monroig O, Ladd N, Schubert CJ, Matthews B, Peichel CL, Seehausen O, Yoshizaki G, and Kitano J. A key metabolic gene for recurrent freshwater colonization and radiation in fishes. Science 364 (6443): 886-889 (2019).
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29) Kitano J, Ishikawa A, Kusakabe M. Parallel transcriptome evolution in stream threespine sticklebacks. Development, Growth & Differentiation 61 (1): 104-113 (2018).
28) Yoshida K, Ishikawa A, Toyoda A, Shigenobu S, Fujiyama A, and Kitano J. Functional divergence of a heterochromatin-binding protein during stickleback speciation. Molecular Ecology 28 (6): 1563-1578 (2018) .
27) Takeuchi Y, Ishikawa A, Oda Y, and Kitano J. Lateralized expression of left-right axis formation genes is shared by adult brains of lefty and righty scale-eating cichlids. Comparative Biochemistry and Physiology Part D: Genomics and Proteomics 28:99-106 (2018)
26) Sardell JM, Cheng C, Dagilis AJ, Ishikawa A, Kitano J, Peichel CL, and Kirkpatrick M. Sex differences in recombination in sticklebacks. G3: Genes, Genomes, Genetics 8: 1971-1983 (2018)
25) Mokodongan DF, Montenegro JA, Mochida K, Fujimoto S, Ishikawa A, Kakioka R, Yong L, Mulis Hadiaty RK, Mandagi IF, Masengi AKW, Wachi N, Hashiguchi Y, Kitano J, and Yamahira K. Phylogenomics reveals habitat-associated body shape divergence in Oryzias woworae species group (Teleostei: Adrianichthyidae). Molecular Phylogenetics and Evolution 118: 194-203 (2018)
24) Ishikawa A, Kusakabe M, Ravinet M, Yoshida K, Makino T, Toyoda A, Fujiyama A, and Kitano J. Different contributions of local- and distant-regulatory changes to transcriptome divergence between stickleback ecotypes. Evolution 71 (3): 565–581 (2017)
23) Gotoh H, Zinna RA, Ishikawa Y, Miyakawa H, Ishikawa A, Sugime Y, Emlen DJ, Lavine LC, Miura T. The function of appendage patterning genes in mandible development of the sexually dimorphic stag beetle. Developmental Biology 422 (1): 24–32 (2017)
22) Kusakabe M, Ishikawa A, Ravinet M, Yoshida K, Makino T, Toyoda A, Fujiyama A, and Kitano J. Genetic basis for variation in salinity tolerance between stickleback ecotypes. Molecular Ecology 26: 304-319 (2016)
21) Yamahira K, Mochida K, Fujimoto S, Mokodongan DF, Montenegro Gonzalez JA, Kaito T, Ishikawa A, Kitano J, Sue T, Mulis Hadiaty RK, Mandagi IF, Masengi AKW. New localities of the Oryzias woworae species group (Adrianichthyidae) in Sulawesi Tenggara. Indonesian Journal of Ichthyology 16(2): 125-131 (2016)
20) Ishikawa A, Kusakabe M, Kume M, and Kitano J. Comparison of freshwater tolerance during spawning migration between two sympatric Japanese marine threespine stickleback species. Evolutionary Ecology Research 17:525-534 (2016)
19) Ravinet M, Ishikawa A, and Kitano J. Trophic niche differentiation and phenotypic divergence among cryptic species of Japanese ninespine stickleback. Evolutionary Ecology Research 17:505-523 (2016)
18) Kusakabe M, Ishikawa A, and Kitano J. Relaxin-related gene expression differs between anadromous and stream-resident stickleback (Gasterosteus aculeatus) following seawater transfer. General and Comparative Endocrinology 205 (1): 197-206 (2014)
17) Gotoh H, Miyakawa H, Ishikawa A, Ishikawa Y, Sugime Y, Emlen DJ, Lavine LC and Miura T. Developmental link between sex and nutrition; doublesex regulates sex-specific mandible growth via Juvenile Hormone signaling in Stag beetle. PLOS Genetics 10 (1): e1004098 (2014)
16) Ishikawa A, and Miura T. Transduction of high-density signals across generations in aphid wing polyphenism. Physiological Entomology 38 (2): 150-156 (2013)
15) Ishikawa A, Takeuchi N, Kusakabe M, Kume M, Mori S, Takahashi H, and Kitano J. Speciation in ninespine stickleback: reproductive isolation and phenotypic divergence among cryptic species of Japanese nine stickleback. Journal of Evolutionary Biology 26 (7): 1417-1430 (2013)
14) Ishikawa A, Gotoh H, Abe T, and Miura T. Juvenile hormone titer and wing-morph differentiation in the vetch aphid Megoura crassicauda. Journal of Insect Physiology 59 (4): 444-449 (2013)
13) Kitano J, Ishikawa A, Kume M, and Mori S. Physiological and genetic basis for variation in migratory behavior in the three-spined stickleback, Gasterosteus aculeatus. Ichthyological Research 59 (4): 293-303 (2012) Open Access
12) Adachi T, Ishikawa A, Mori S, Makino W, Kume M, Kawata M, Kitano J. Shifts in morphology and diet of non-native sticklebacks introduced into Japanese crater lakes. Ecology and Evolution 2 (6): 1083-1098 (2012) Open Access
11) Ishikawa A, Ishikawa Y, Okada Y, Miyazaki S, Miyakawa H, Koshikawa S, Brisson JA, and Miura T. Screening of up-regulated genes induced by high density in the vetch aphid Megoura crassicauda. Journal of Experimental Zoology Part A: Ecological Genetics and Physiology 317 (3): 194-203 (2012)
10) Ishikawa A, Ogawa K, Gotoh H, Walsh TK, Tagu D, Brisson JA, Rispe C, Jaubert-Passamai S, Kanbe T, Tsubota T, Shiotsuki T, and Miura T. Juvenile hormone titre and related gene expression during the change of reproductive modes in the pea aphid. Insect Molecular Biology 21 (1): 46-60 (2012)
9) Ogawa K, Ishikawa A, Kanbe T, Akimoto S, and Miura T. Male-specific flight-apparatus development in Acyrthosiphon pisum (Aphididae, Hemiptera, Insecta): comparison with female wing polyphenism. Zoomorphology 131 (3): 197-207 (2012)
8) Ishikawa Y, Okada Y, Ishikawa A, Miyakawa H, Koshikawa S, and Miura T. Gene expression changes during caste-specific neuronal development in the damp-wood termite Hodotermopsis sjostedti. BMC Genomics 11: 314 (2010) Open Access
7) Miyakawa H, Imai M, Sugimoto N, Ishikawa Y, Ishikawa A, Ishigaki H, Okada Y, Miyazaki S, Koshikawa S, Cornette R, and Miura T. Gene up-regulation in response to predator kairomones in the water flea, Daphnia pulex. BMC Developmental Biology 10: 45 (2010) Open Access
6) The International Aphid Genomics Consortium. Genome sequence of the pea aphid Acyrthosiphon pisum. PLoS Biology 8 (2): e1000313 (2010)
5) Okada Y, Miyazaki S, Miyakawa H, Ishikawa A, Tsuji K, and Miura T. Ovarian development and insulin-signaling pathways during reproductive differentiation in the queenless ponerine ant Diacamma sp. Journal of Insect Physiology 56: 288-295 (2010)
4) Brisson JA, Ishikawa A, and Miura T. Wing development genes of the pea aphid and differential gene expression between winged and unwinged morph. Insect Molecular Biology 19 (suppl 2): 63-73 (2010)
3) Ishikawa A, and Miura T. Differential regulation of wing and ovarian development and heterochronic changes of embryogenesis between morphs in wing polyphenism of the vetch aphid. Evolution & Development 11: 680-688 (2009)
2) Ishikawa A, Hongo S, and Miura T. Morphological and histological examination of polyphenic wing formation in the pea aphid Acyrthosiphon pisum (Hemiptera, Hexapoda). Zoomorphology 127: 121-133 (2008)
1) Ishikawa A, and Miura T. Morphological differences between wing morphs of two Macrosiphini aphid species, Acyrthosiphon pisum and Megoura crassicauda (Hemiptera, Aphididae). Sociobiology 50: 881-893 (2007)
Book Chapters
4) 石川麻乃「さまざまな淡水環境に適応進化したトゲウオたち」『遺伝子から解き明かす＜魚＞の不思議な世界（神田真司 編集）』pp. 176－206, 一色出版 (2019)
3) Kitano J, Ishikawa A, and Lema S. C. Integrated genomics approaches in evolutionary and ecological endocrinology. In: Ecological Genomics (Landry C, and Aubin-Horn N Ed.), p.299-319, Springer (2014)
2) Ishikawa A, and Kitano J. Ecological genetics of thyroid hormone physiology in humans and animals. In: Thyroid Hormones (N. K. Agrawal Ed.), pp.37-50, InTech, (2012) Open Access
1) 石川 麻乃 「エンドウヒゲナガアブラムシ」研究者が教える動物飼育 第２巻 昆虫とクモの仲間（針山孝彦・小柳光正・嬉正勝・妹尾圭司・小泉修 日本比較生理生化学会 編集） pp.74-78, 共立出版. Pea aphid, In Kenkyuusya ga Oshieru Doubutsu no Shiiku. Edited by:Hariyama T et al. Kyoritsu Shuppan. (in Japanese) (2012)
Others (受賞記、寄稿など)
1) 石川 麻乃 「基礎学問としての進化生物学と社会の未来を考える（連載「学術と社会の未来を考える（Vol.10）」）」学術の動向、2021年26巻3号、p. 3_94-3_99
2) 石川 麻乃 「研究奨励賞を受賞して」日本進化学会ニュース、2021年22巻1号、p. 4-7