学術論文 (Publications)
Under submission
Published (Peer-reviewed)
*Corresponding author
2024
25. Hamamoto K, Iguchi A*, Gibu K, Ozawa H, Kojima M, Arakaki S, Yoshioka Y, Saito N & Fujita Y* (2024) Asymmetric genetic population structures at the range edges of a mangrove whelk. Science of The Total Environment. 173248.
24. Shinzato C* & Yoshioka Y (2024) Genomic data reveal diverse biological characteristics of scleractinian corals and promote effective coral reef conservation. Genome Biology and Evolution. 16(2):evae014.
23. Jandang S*, Viyakarn V, Yoshioka Y, Shinzato C & Chavanich S* (2024) Ontogenetic shifts in Symbiodiniaceae assemblages within cultured Acropora humilis across hatchery rearing and post-transplantation phases. Frontiers in Marine Science. 11:1138021.
2023
22. Yoshioka Y*, Chiu YL, Uchida T, Yamashita H, Suzuki G & Shinzato C* (2023) Genes possibly related to symbiosis in early life stages of Acropora tenuis inoculated with Symbiodinium microadriaticum. Communications Biology. 6, 1027. ●大海研からのプレスリリース [Link]
21. Uchida T, Yoshioka Y, Yoshida Y, Fujie M, Yamaki A, Sasaki A, Inoue K & Shinzato C* (2023) Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma. DNA Research. 30(4): dsad014. ●大海研からのプレスリリース [Link]
20. Kise H, Iguchi A*, Saito N, Yoshioka Y, Uda K, Suzuki T, Nagano AJ, Suzuki A & Iwasaki N (2023) Genetic population structure of the precious coral Corallium japonicum in the Northwest Pacific. Frontiers in Marine Science. 10:1052033. ●産総研からのプレスリリース [Link]
19. Wada N, Iguchi A, Urabe Y, Yoshioka Y, Abe N, Takase K, Hayashi S, Kawanabe S, Sato Y, Tang SL* & Mano N* (2023) Microbial mat compositions and localization patterns explain the virulence of black band disease in corals. npj Biofilms Microbiomes. 9:15.
2022
18. Gibu K, Ikeuchi E, Bell T, Nakamura T, Yoshioka Y, Suzuki A & Iguchi A* (2022) Calcification rates of a massive and a branching coral species were unrelated to diversity of endosymbiotic dinoflagellates. Molecular Biology Reports. 49:9101–9106.
17. Jandang S, Viyakarn V, Yoshioka Y, Shinzato C & Chavanich S* (2022) The seasonal investigation of Symbiodiniaceae in broadcast spawning, Acropora humilis and brooding, Pocillopora cf. damicornis corals. PeerJ. 10:e13114.
16. Yoshioka Y, Suzuki G, Zayasu Y, Yamashita H & Shinzato C* (2022) Comparative genomics highlight the importance of lineage-specific gene families in evolutionary divergence of the coral genus, Montipora. BMC Ecology and Evolution. 22:71.
15. Yoshioka Y, Yamashita H, Suzuki G & Shinzato C* (2022) Larval transcriptomic responses of a stony coral, Acropora tenuis, during initial contact with the native symbiont, Symbiodinium microadriaticum. Scientific Reports. 12:2854.
2021
14. Shinzato C*, Takeuchi T, Yoshioka Y, Tada I, Kanda M, Broussard C, Iguchi A, Kusakabe M, Marin F, Satoh N & Inoue M (2021) Whole-genome sequencing highlights conservative genomic strategies of a stress-tolerant, long-lived scleractinian coral, Porites australiensis Vaughan, 1918. Genome Biology and Evolution. 13(12):evab270.
13. Sassa M, Takagi T, Kinjo A, Yoshioka Y, Zayasu Y, Shinzato C, Kanda S, Murakami-Sugihara N, Shirai K & Inoue K* (2021) Divalent metal transporter-related protein restricts animals to marine habitats. Communications Biology. 4: 463. ●大海研からのプレスリリース [Link]
12. Inoue K*, Yoshioka Y, Tanaka H, Kinjo A, Sassa M, Ueda I, Shinzato C, Toyoda A & Itoh T (2021) Genomics and transcriptomics of the green mussel explain the durability of its byssus. Scientific Reports. 11:5992. ●大海研からのプレスリリース [Link]
11. Yoshioka Y, Yamashita H*, Suzuki G, Zayasu Y, Tada I, Kanda M, Satoh N, Shoguchi E & Shinzato C* (2021) Whole-genome transcriptome analyses of native symbionts reveal host coral genomic novelties for establishing coral-algae symbioses. Genome Biology and Evolution. 13(1):evaa240.
10. Shinzato C*, Khalturin K, Inoue J, Zayasu Y, Kanda M, Kawamitsu M, Yoshioka Y, Yamashita H, Suzuki G & Satoh N (2021) Eighteen coral genomes reveal the evolutionary origin of Acropora strategies to accommodate environmental changes. Molecular Biology and Evolution. 38(1):16-30. ●大海研からのプレスリリース [Link]
2020
9. Chiu YL, Shikina S*, Yoshioka Y, Shinzato C* & Chang CF* (2020) De novo transcriptome assembly from the gonads of a scleractinian coral, Euphyllia ancora: molecular mechanisms underlying scleractinian gametogenesis. BMC Genomics. 21(1):732.
8. Yorisue T*, Iguchi A, Yasuda N, Mizuyama M, Yoshioka Y, Miyagi A & Fujita Y (2020) Extensive gene flow among populations of the cavernicolous shrimp at the northernmost distribution margin in the Ryukyu Islands, Japan. Royal Society Open Science. 7(10):191731.
7. Takagi T*, Yoshioka Y, Zayasu Y, Satoh N & Shinzato C (2020) Transcriptome analyses of immune system behaviors in primary polyp of coral Acropora digitifera exposed to the bacterial pathogen Vibrio coralliilyticus under thermal loading. Marine Biotechnology. 22(6):748-759.
6. Yorisue T*, Iguchi A*, Yasuda N, Yoshioka Y, Sato T & Fujita Y (2020) Evaluating the effect of overharvesting on genetic diversity and genetic population structure of the coconut crab. Scientific Reports. 10:10026. ●産総研からのプレスリリース [Link]
5. Shoguchi E†*, Yoshioka Y†, Shinzato C, Arimoto A, Bhattacharya D & Satoh N (2020) Correlation between organelle genetic variation and RNA editing in dinoflagellates associated with the coral Acropora digitifera. Genome Biology and Evolution. 12(3):203-209. († equal contribution)
4. Iguchi A*, Nishijima M, Yoshioka Y, Miyagi A, Miwa R, Tanaka Y, Kato S, Matsui T, Igarashi Y, Okamoto N & Suzuki A (2020) Deep-sea amphipods around cobalt-rich ferromanganese crusts: Taxonomic diversity and selection of candidate species for connectivity analysis. PLoS One. 15(2):e0228483.
2019
3. Iguchi A*, Yoshioka Y, Forsman HZ, Knapp ISS, Toonen RJ, Hongo Y, Nagai S & Yasuda N* (2019) RADseq population genomics confirms divergence across closely related species in blue coral (Heliopora coerulea). BMC Evolutionary Biology. 19(1):187.
2018
2. Yorisue T*, Yoshioka Y, Sakuma K & Iguchi A (2018) Evaluating the occurrence of cryptic invasions of a rocky shore barnacle, Semibalanus cariosus, between the north-eastern Pacific and Japan. Biofouling. 34(2):183-189.
2017
1. Yoshioka Y, Tanabe T & Iguchi A* (2017) The presence of genes encoding enzymes that digest carbohydrates in coral genomes and analysis of their activities. PeerJ. 5:e4087.