Journals
Wu Qiu, Yimin Chen, Jessica Kishimoto, Sandrine de Ribaupierre, Bernard Chiu, Aaron Fenster, Jing Yuan
Automatic Segmentation Approach to Extracting Neonatal Cerebral Ventricles from 3D Ultrasound Images
Medical Image Analysis (accepted)
E. Ukwatta, H. Arevalo, K. Li, J. Yuan, P. Malamas, W. Qiu, K. C. Wu, N. A. Trayanova, F. Vadakkumpadan
Myocardial Infarct Segmentation from Magnetic Resonance Images for Personalized Modeling of Cardiac Electrophysiology
IEEE Trans. Medical Imaging (accepted)
E. Ukwatta, J. Yuan*, M. Rajchl, W. Qiu, B. Chiu, A. Fenster
Joint Segmentation of Lumen and Outer Wall from 3D Femoral Artery MR Images: Towards 3D Imaging Measurements of Peripheral Arterial Disease
Medical Image Analysis 26(1): 120-132 2015
Wu Qiu, Jing Yuan*, Martin Rajchl, Jessica Kishimoto, Yimin Chen, Sandrine de Ribaupierre, Bernard Chiu, Aaron Fenster
3D MR Ventricle Segmentation in Pre-Term Infants with Post-Hemorrhagic Ventricle Dilatation (PHVD) Using Multi-Phase Geodesic Level-Sets
NeuroImage 118: 13-25 (2015)
Yue Sun, Wu Qiu, Jing Yuan, Cesare Romagnoli, Aaron Fenster
Three-Dimensional Non-Rigid Landmark-Based Magnetic Resonance to Transrectal Ultrasound Registration for Image-Guided Prostate Biopsy
Journal of Medical Imaging (accepted)
Fumin Guo, Jing Yuan, Martin Rajchl, Sarah Svenningsen, Dante Capaldi, Aaron Fenster, Grace Parraga
Globally Optimal Co-Segmentation of Three-dimensional Pulmonary 1H and Hyperpolarized 3He MRI with Spatial Consistence Prior
Medical Image Analysis 23(1): 43-55 (2015)
M. Rajchl, J. Baxter, J. Yuan, T. Peters
Hierarchical Max-Flow Segmentation Framework For Multi-Atlas Segmentation with Kohonen Self-Organizing Map Based Gaussian Mixture Modeling
Medical Image Analysis (accepted)
with Caroline Petitjean etc
Right Ventricle Segmentation from Cardiac MRI: a Collation Study
Medical Image Analysis 19(1): 187-202 (2015)
Yue Sun, Jing Yuan, Wu Qiu, Martin Rajchl, Cesare Romagnoli, Aaron Fenster
Three-Dimensional Non-Rigid MR-TRUS Registration Using Dual Optimization
IEEE Trans. Medical Imaging 34(5): 1085-1095 (2014)
Wu Qiu, Jing Yuan, Jessica Kishimoto, Jonathan McLeod, Yimin Chen, Sandrine de Ribaupierre, Aaron Fenster
User-Guided Segmentation of Preterm Neonate Ventricular System from 3D Ultrasound Images Using Convex Optimization
Ultrasound in Medicine and Biology 41(2): 542-556 (2015)
Wu Qiu, Jing Yuan, Eranga Ukwatta, Aaron Fenster
Rotationally Resliced 3D Prostate TRUS Segmentation Using Convex Optimization with Shape Priors
Medical Physics 42(2): 877-891 (2015)
W. Qiu, J. Yuan, E. Ukwatta, S. Yue, M. Rajchl, A. Fenster
Dual Optimization Based Prostate Zonal Segmentation in 3D MR Images
Medical Image Analysis 18(4): 660–673 (2014)
with G. J. S. Litjens, etc.
Evaluation of prostate segmentation algorithms for MRI: The PROMISE12 challenge
Medical Image Analysis 18(2): 359-373 (2014)
W. Qiu, J. Yuan, E. Ukwatta, S. Yue, M. Rajchl, A. Fenster
An Efficient Convex Optimization Approach with Axial Symmetry Using 3D TRUS and MR Images
IEEE Trans. Medical Imaging 33(4): 947-960 (2014)
M. B. Salah, I. Ben Ayed, J. Yuan, H. Zhang
Convex-Relaxed Kernel Mapping for Image Segmentation
IEEE Trans. Image Processing 23(3): 1143-1153 (2014)
M. Rajchl, J. Yuan, J. A. White, E. Ukwatta, J. Stirrat, C. Nambakhsh, F. Li, T. Peters
Fast Hierarchical Max-Flow Segmentation of Scar Tissue from Late-Enhancement Cardiac MR Images
IEEE Trans. Medical Imaging 33(1): 159-172 (2014)
A. Soliman, J. Yuan, K. Vigen, J. White, T. Peters, C. McKenzie
Max-IDEAL: A Max-Flow Based Approach for IDEAL Water/Fat Separation
Magnetic Resonance in Medicine Sept. (2013)
W. Qiu, J. Yuan, E. Ukwatta, D. Tessie, A. Fenster
Medical Physics 40(7) (2013)
E. Ukwatta, J. Yuan, D. Buchanan, B. Chiu, J. Awad, W. Qiu, G. Parraga, A. Fenster
Three-Dimensional Segmentation of Three-Dimensional Ultrasound Carotid Atherosclerosis Using Sparse Field Level Sets
Medical Physics Vol. 40 (2013)
E. Ukwatta, J. Yuan, M. Rajchl, W. Qiu, A. Fenster
3D Carotid Multi-Region MRI Segmentation by Globally Optimal Evolution of Coupled Surfaces
IEEE Trans. Medical Imaging 32(4): 770-785 (2013)
J. Yuan, B. Miles, G. Garvin, X.C. Tai, A. Fenster
Efficient Convex Optimization Approaches to Variational Image Fusion
Numerical Mathematics: Theory, Methods and Applications 7: 234-250 (2014)
J. Yuan, E. Ukwatta, X.C. Tai, A. Fenster, C. Schnoerr
A Fast Global Optimization-Based Approach to Evolving Contours with Generic Shape Prior
In submission, also UCLA Tech. Report CAM 12-38
E. Bae, J. Yuan, X.C. Tai
A Fast Continuous Max-Flow Approach to Non-Convex MultiLabeling Problems
Dagstuhl Proceeding (2011), also UCLA Tech. Reports CAM 10-62
E. Bae, J. Yuan, X.C. Tai
Simultaneous Convex Optimization of Regions and Region Parameters in Image Segmentation Models
Dagstuhl Proceeding (Edited M. Breuss, A. Bruckstein and P. Maragos) 421-438 (2011)
K. Punithakumar, J. Yuan, I. B. Ayed, S. Li, Y. Boykov
A Convex Max-Flow Approach to Distribution Based Figure-Ground Seperation
SIAM Imag. Sciences 5(4): 1333-1354 (2012)
M. S. Nambakhsh, J. Yuan, K. Punithakumar, A. Goela, M. Rajchl, T. M. Peters, I. B. Ayed
Left Ventricle Segmentation in MRI via Convex Relaxed Distribution Matching
Medical Image Analysis 17(8): 1010-1024 (2013)
Jing Yuan, Juan Shi and Xue-Cheng Tai
A Fast and Exact TV-L1 Approach to Discrete Constrained Image Approximation (To appear soon)
Jing Yuan, Egil Bae, Xue-Cheng Tai and Yuri Boykov
A Fast Continuous Max-Flow Approach to Potts Model (To appear soon)
Jing Yuan, Egil Bae, Xue-Cheng Tai and Yuri Boykov
A Study on Continuous Max-Flow and Min-Cut Approaches
Numerische Mathemetik 126(3): 559-587 (2014)
Egil Bae, Jing Yuan, Xue-Cheng Tai and Yuri Boykov
A Fast Continuous Max-Flow Approach to Non-Convex MultiLabeling Problems
Submitted to Math. Comp., also UCLA Tech. Report CAM 10-62
Jing Yuan, Juan Shi and Xue-Cheng Tai
A Convex and Exact Approach to Discrete Constrained TV-L1 Image Approximation
East Asian Journal on Applied Mathematics (EAJAM) 1(2): 172-186 (2011)
Egil Bae, Jing Yuan and Xue-Cheng Tai
Global Minimization for Continuous Multiphase Partitioning Problems Using a Dual Approach
International Journal of Computer Vision (IJCV) 92(1): 112-129 (2011)
Jing Yuan, Christoph Schnörr, Gabriele Steidl
Convex Hodge Decomposition and Regularization of Image Flows
Journal of Mathematical Imaging and Vision (JMIV) 33(2): 169-177 (2009)
Jing Yuan, Christoph Schnörr, Gabriele Steidl
Simultaneous Higher-Order Optical Flow Estimation and Decomposition
SIAM J. Scientific Computing 29(6): 2283-2304 (2007) (Bibtex)
Jing Yuan, Christoph Schnörr, Étienne Mémin
Discrete Orthogonal Decomposition and Variational Fluid Flow Estimation
Journal of Mathematical Imaging and Vision (JMIV) 28(1): 67-80 (2007) (Bibtex)