04. Peak Detection in ChIPSeq data

ChIPSeq analysis

The problem

http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003326

Solutions, peak detection algorithms

http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0011471

http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0096303

Downstream analysis of Peaks (MEME etc)

Biases (the gene expression bias)

http://computational-genomics-uoc.weebly.com/blog/category/chipseq-bias

http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0083506

http://www.ncbi.nlm.nih.gov/pubmed/24173036