Lab GitHub codes and other resources
Lab GitHub codes and other resources
The AI model for cell nuclei segmentation of PWS microscopy images, termed csPWS-seg, test code is now available on our Gaire Laboratory GitHub Page. Please visit the PWS-AI repository to use the code.
Deep learning based acceleration of sSMLM imaging, test code is now available on our Gaire Laboratory GitHub Page. Please visit the Accelerated sSMLM Using Deep Learning repository to use the code.
Single-molecule localization microscopy (SMLM) and other resources
Our DsSMLM Paper link.
Single-Molecule Localization Microscopy - Software Benchmarking GitHub page
ShareLoc SMLM data and tools GitHub page
ThunderSTORM ImageJ plugin
RainbowSTORM Imagej Plugin
GDSC Single Molecule Light Microscopy (SMLM) ImageJ Plugins
SMLMSim - Julia package for simulating SMLM data GitHub Page
JuliaSMLM Julia-based tools for SMLM GitHub Page
PWSpy, Python module dedicated to analysis of Partial Wave Spectroscopic Microscopy data, GitHub Page
csPWS-seg: Our attention mechanism-based deep learning model for cell nuclei segmentation of PWS microscopy images GitHub Page