Lab GitHub codes and other resources
Lab GitHub codes and other resources
The AI model for cell nuclei segmentation of PWS microscopy images, termed csPWS-seg, test code is now available on our Gaire Laboratory GitHub Page. Please visit the PWS-AI repository to use the code.
Deep learning based acceleration of sSMLM imaging: test code is now available on our Gaire Laboratory GitHub Page. Please visit the Accelerated sSMLM Using Deep Learning repository to use the code.
Single-molecule localization microscopy (SMLM) and other resources
Our DsSMLM Paper link.
Single-Molecule Localization Microscopy - Software Benchmarking GitHub page
ShareLoc SMLM data and tools GitHub page
ThunderSTORM ImageJ plugin
RainbowSTORM Imagej Plugin
GDSC Single Molecule Light Microscopy (SMLM) ImageJ Plugins
SMLMSim - Julia package for simulating SMLM data GitHub Page
JuliaSMLM Julia-based tools for SMLM GitHub Page
PWSpy, Python module dedicated to analysis of Partial Wave Spectroscopic Microscopy data, GitHub Page
csPWS-seg: Our attention mechanism-based deep learning model for cell nuclei segmentation of PWS microscopy images GitHub Page