Publication
(as of May 15, 2024)
On-going
T. Peskett, S. S. Lee, Y. Barral, "A protein condensation network contextualises cell fate decisions", bioRxiv, doi: https://doi.org/10.1101/2024.04.18.590070 [Link]
Y. Ma, L. Persi, S. Yan, S. S. Lee, M. Baumgartner, Y. Yamakoshi (submitted)
M. Mirkovic, J. McCarthy, A. C.Meinema, J. Parenteau, S. S. Lee, S. A. Elela, Y. Barral (submitted)
V. Gligorovski et al..... S. S. Lee .... S. J. Rahi (submitted)
M. Schwarzfischer, T. S Ruoss, A. Niechcial, S. S Lee, M. Wawrzyniak, A. Laimbacher, K. Atrott, R. Manzini, M. Willmink, L. M Linzmeier, Y. Morsy, S. Lang, G. Rogler, R. Kaegi, M. Scharl and M. R Spalinger (in revision)
G. Kim , H. Hugonnet, K. Kim , J.-H. Lee , S. S. Lee, .J Ha , C. Lee, H. Park , K.-J. Yoon, Y. Shin, G. Csucs , I. Hitchcock , L. Mackinder, J. H. Kim, T. H. Hwang, S.Lee, P. O'Toole, B.-K. Koo, J. Guck, YK Park (in revision)
2024
D. Zauchner, M. Z. Müller, L. Bissig, F. Zhao, S. S. Lee, R. Müller, and X.-H. Qin, "Synthetic Biodegradable Void-forming Hydrogels for In Vitro 3D Culture of Functional Human Bone Cell Networks, Nature Comm, 2024 (in press) bioRxiv, doi.org/10.1101/2023.10.23.563580 [Link]
KS Lee, Z Landry, A Athar, U Alcolombri, P Ayutthaya, D Berry, P Bettignies, J Cheng, G Csucs, L Cui, V Deckert, T Dieing, O Doskocil, C García-Timermans, N Gierlinger, K Goda, R Hatzenpichler, R Henshaw, W Huang, I Iermak, N Ivleva, J Kneipp, P Kubryk, K Küsel, TK Lee, S. S. Lee, B Ma, C Martínez-Pérez, R Meckenstock, W Min, P Mojzeš, O Müller, P Nielsen, I Notingher, M Palatinszky, F Pereira, G Pezzotti, Z Pilát, F Plesinger, J Popp, A Riva, O Samek, H Sapers, G Taylor, M Wagner, H Yin, R Zenobi, U Sarkans, J Dionne, G D’Souza, P Matousek, N Kumar, A Probst, A Saleh, O Schubert, A Stubbusch, L Tadesse, J Wang, Y Yue, J Zini, R Stocker, "MicrobioRaman: An open-access web repository for microbiological Raman spectroscopy data", Nature Microbiology, 2024 [Link]
A. K. Hamid, E. M. P. Arroyo, S. S. Lee, C. A. Wagner, D. Egli-Spichtig, "A Novel Method for Automated Crystal Visualization and Quantification in Murine Folic Acid-Induced Acute Kidney Injury", American Journal of Physiology-Renal Physiology, 2024, 326, F105-F1172 [Link]
2023
Y. Jung, T. Shim, S. S. Lee, J. M. Kim, "Confinement effect on the lateral particle migration in DNA Solution”, Physics of Fluids, 2023, 35, 122014 [Link]
S. Iwakiri, J. Miller, F. Lang, J. Prettenthaler, T. Taniguchi, K. Watanabe, S. S. Lee, P. Becker, D. Günther, T. Ihn, and K. Ensslin “High-mobility transport in isotopically enriched 12C and 13C exfoliated graphene” Physical Review Research, 2023, 5, 043212 [Link]
M. Lee, M. Kunzi, G. Neurohr*, S. S. Lee*, Y. Park*, "Hybrid machine-learning framework for volumetric segmentation and quantification of vacuoles in individual unlabeled yeast cells using holotomography", Biomedical Optics Express, 2023, 14, 4567 (*corresponding author) [Link]
M. Mosbacher, S. S. Lee, M. Peter, M. Claassen, "Positive feedback induces switch between distributive and processive phosphorylation of Hog1", Nature Communications , 2023, 14, 2477 [Link]
2022
Y. J. Kang, S. Serhrouchni, A. Makhro, A. Bogdanova*, and S. S. Lee* , "Simple assessment of red blood cell deformability using blood pressure in capillary channels for effective detection of sub-populations in red blood cells", ACS Omega, 2022, 7, 38576 (*corresponding author) [Link]
J. Kim, S Kim, S. Uddin, S. S. Lee, S. Park, "Microfabricated Stretching Devices for Studying the Effects of Tensile Stress on Cells and Tissues", BioChip J. , 2022, 16, 366 [Link]
J. T. C. Wennmacher, S. Mahmoudi, P. Rzepka, S. S. Lee, T. Gruene, Vladimir Paunović, Jeroen Anton van Bokhoven, "Electron Diffraction Enables the Mapping of Coke in ZSM-5 Micropores Formed during Methanol-to-Hydrocarbons Conversion", Angew. Chem. Int. Ed. , 2022, 61, e202205413 [Link]
V. M. Kissling, G. Reginato, E. Bianco, K. Kasaciunaite, J. Tilma, G. Cereghetti, S. S. Lee, R. Guérois, R. Seidel, P. Cejka, M. Peter "Mre11-Rad50 oligomerization promotes DNA double-strand break repair", Nature Comm, 2022, 13, 2374 [Link]
A. C. Meinema, A. Marzelliusardottir, M. Mirkovic, T. Aspert, S. S. Lee, G. Charvin, Y. Barral, "DNA circles promote yeast ageing in part through stimulating the reorganization of nuclear pore complexes", eLife, 2022 , 11, e71196 [Link]
V. Paunovic, V. Sushkevich, P. Rzepka, L. Artiglia, R. Hauert, S. S. Lee, J. A. van Bokhoven, "Reactivation of catalysts for methanol-to-hydrocarbons conversion with hydrogen", Journal of Catalysis, 2022, 407, 54 [Link]
M. Schwarzfischer, A. Niechcial, S. S. Lee, M. Wawrzyniak, A. Laimbacher, K. Atrott, R. Manzini, Y. Morsy, J. Häfliger, S. Lang, G. Rogler, M. Scharl, M. R. Spalingera, "Ingested nano- and microsized polystyrene particles surpass the intestinal barrier and accumulate in the body", Nanoimpact, 2022, 25, 100374 [Link]
2021
B. Kim, S. S. Lee, T. H. Yoo, J. M. Kim, "Viscoelastic Particle Focusing in Human Biofluids", Electrophoresis , 2021, 42, 2238 [Link]
S. O. Hong, K.-S Park, D.-Y. Kim, S. S. Lee*, C.-S. Lee* and J. M. Kim* ,"Gear-Shaped Micromixer for Synthesis of Silica Particles Utilizing Inertio-Elastic Flow Instability" Lab on a chip, 2021, 21, 513 (*corresponding author) (Inside cover of journal) [Link]
2020
B. Lee, S-G Jeong, S. H. Jin, R. Mishra, M. Peter*, C-S. Lee*, S. S. Lee*, "Quantitative analysis of yeast MAPK signaling networks and crosstalk using a microfluidic device” , Lab on a chip , 2020, 20, 2646 (*corresponding author) (Inside back cover of journal)[Link]
M.-Erik Mäeots, B. Lee, A.Nans, S.-G. Jeong, M. M. N. Esfahani, D. J. Smith, C.-S. Lee*, S. S. Lee*, M. Peter*, R. I. Enchev*, "Modular microfluidics enables kinetic insight from time-resolved cryo-EM", Nature Comm , 2020, 11, 3465 (*corresponding author) [Link]
F. van Drogen, N. Dard, S. Pelet, S. S. Lee, R. Mishra, N. Srejić , M Peter, "Crosstalk and spatiotemporal regulation between stress-induced MAP kinase pathways and pheromone signaling in budding yeast" Cell Cycle, 2020, 19, 1707 [Link]
J. B. You, B. Lee, Y. Choi, C.-S. Lee, M. Peter, S. G. Im, S. S. Lee*, "Nano-adhesive layer to prevent protein absorption in PDMS microfluidic device", Biotechniques , 2020, 69 (*corresponding author) [Link]
S. S. Lee "Editorial for the Special Issue on Microfluidics for Soft Matter and Mechanobiology", Micromachines, 2020, 11, 372 [Link]
V. Paunovic, S. Mitchell, R. Verel, S. S. Lee, J. Pérez-Ramírez, Javier, "Aluminum Redistribution in ZSM-5 Zeolite upon Interaction with Gaseous Halogens and Hydrogen Halides and Implications in Catalysis", J. Phys. Chem. C, 2020, 124, 722 [Link]
2019
Q. Feng*, S. S. Lee*, B. Kornmann, "A Toolbox for Organelle Mechanobiology Research – Current Needs and Challenges", Micromachines, 2019, 10, 538 (*corresponding author) [Link]
S. Kim, S. M. Lee, S. S. Lee, D. S. Lee, "Microfluidic Generation of Amino‐Functionalized Hydrogel Microbeads Capable of On‐Bead Bioassay", Micromachines, 2019, 10, 527 [Link]
F van Drogen, R. Mishra, F Rudolf, M J. Walczak, S. S. Lee, W Reiter, B. Hegemann, S. Pelet, I Dohnal, A Binolf, Z Yudina, P. Selenko, G. Wider, G. Ammerer. M Peter, "Mechano stress inhibits pheromone signaling via Pkc1-dependen regulation of the MAPK scaffold Ste5", J Cell Biol 2019, 218, 3117-3133 [Link]
B. Kim, S. S. Lee, T. H Yoo, S. Kim, S. Y. Kim, S -H Choi , J. M. Kim, " Normal stress difference–driven particle focusing in nanoparticle colloidal dispersion", Science Advances, 2019, 5: eaav4819 [Link]
2018
C Simpson, S. S. Lee, C.-S Lee, Y. Yamauchi, "Microfluidics: An untapped resource in viral diagnostics and viral cell biology", Current Clinical Microbiology Reports, 2018, 5, 245-251 [Link]
H Ryu, M Chung, J Song, S. S. Lee, O. Pertz, N. L. Jeon, "Integrated platform for monitoring single-cell MAPK kinetics in computer-controlled temporal stimulations", Scientific Reports, 2018, 8, 11126 [Link]
J Song, H Ryu, M Chung, Y Kim, Y Blum, S. S. Lee, O Pertz, N.L. Jeon, "Microfluidic platform for single cell analysis under dynamic spatial and temporal stimulation.", Biosensors & Bioelectronics, 2018, 104, 58-64 [Link]
2017
R. Mishra, F. van Drogen, R. Dechant, S. Oh, N.L. Jeon, S. S. Lee*, M Peter*, "Protein kinase C and calcineurin cooperatively mediate cell survival under compressive mechanical stress", PNAS, 2017, 114(51)13471-13476 (*corresponding author)[Link]
S. H. Jin#, S. S. Lee#, S.-G Jeong, M. Peter, and C.-S Lee, "A programmable static droplet array for the analysis of cell-cell communication in a confined microenvironment", Anal Chem, 2017, 89, 9722-9729 [Link] (#equally contributed 1st author)
B. Jang, A.Hong, H. Kang, C. Alcantara, E. Pellicer, R. Büchel, J. Sort, S. S. Lee, B.J. Nelson and S Pané,"Multiple-light responsive Au/H-TiO2 Janus micro motors", ACS Nano, 2017, 11, 6146-6154 [Link]
2016
S. H.Jin, S.-C. Jang, B. Lee, H.-H Jeong, S.-G Jeong, S. S. Lee* , K. P. Kim, C.-S Lee*, "Monitoring of Chromosome Dynamics of Single Yeast Cell in a Microfluidic Platform with Aperture Cell Traps", Lab Chip , 2016, 16, 1358 (*corresponding author) [Link] (Back cover of journal)
D. J. Klionsky et al "Guidelines for the use and interpretation of assays for monitoring autophagy (3rd Edition)" Autophagy, 2016,1,1-222 [Link]
2015
H. Ryu, M. Chung, M. Dobrzyński, D. Fey, Y. Blum, S. S. Lee, M Peter, B. N. Kholodenko, N. L. Jeon, O. Pertz, "Frequency modulation of ERK activation dynamics rewires cell fate" Molecular Systems Biology, 2015,11, 838 [Link] (Front cover of journal)
B. Hegemann, M. Unger, S. S. Lee, I. Stoffel-Studer, J. van den Heuvel, S. Pelet, H. Koeppl and M. Peter, “A Cellular System for Spatial Signal Decoding in Chemical Gradients” Developmental Cell, 2015, 35(4),458-470 [Link]
S. H. Jin, H. Jeong, B. J. Lee, S. S. Lee and C. Lee, "A programmable microfluidic static droplet array for droplet generation, transportation, fusion, storage, and retrieval", Lab on a chip, 2015, 15, 3677-3686 [Link] (Back cover of journal)
J. Y. Lee, Y. Park, S. Pun, S. S. Lee, J. F. Lo and L. P. Lee, "Real-time investigation of cytochrome c release profiles in living neuronal cells undergoing amyloid beta oligomer-induced apoptosis", Nanoscale, 2015, 7, 10340-10343 [Link]
H. Sharifian, F. Lampert, K. Stojanovski, S. Regot, S. Vaga, R. Buser, S. S. Lee, H. Koeppl, F. Posas, S. Pelet, M. Peter "Parallel feedback loops control the basal activity of the HOG MAPK signalling cascade", Integrative Biology, 2015, 7, 412-422 [Link]
S. W. Ahn, S. S. Lee, S. J. Lee, J. M. Kim, "Microfluidic particle separator utilizing sheathless elasto-inertial focusing", Chemical Engineering Science, 2015, 126, 237-243 [Link]
2014
S. S. Lee, S. Pelet. M. Peter and R. Dechant, "A rapid and effective vignetting correction for quantitative microscopy", RSC Advances, 2014, 4 (95) 52727-52733 [Link]
D. H. E. W. Huberts, J. González, S. S. Lee, A Litsios, G. Hubmann, E. C. Wit, and M. Heinemann, “Calorie restriction does not elicit a robust extension of replicative lifespan in Saccharomyces cerevisiae” PNAS, 2014, 111(32)11727-11731 [Link]
S. S. Lee, L. P. Lee, “Noninvasive Label-free Nanoplasmonic Optical Imaging for Real-time In-vitro Monitoring of Amyloid Fibrogenesis.” Nanoscale, 2014, 6, 3561-3565 [Link]
D. Papinski, , M. Schuschnig, W. Reiter, L. Wilhelm, C.Barnes, A. Majolica, I. Hansmann,T. Pfaffenwimmer, M. Kijanska, I. Stoffel, S. S. Lee, A. Brezovich, J. Hua Lou, B.E. Turk, R. Aebersold, G. Ammerer, M. Peter, and C. Kraft, "Early steps in autophagy depend on direct phosphorylation of Atg9 by the Atg1 kinase", Molecular Cell, 2014, 53, 1-13 [Link]
2013
D. H. E. W. Huberts, S. S. Lee*, J. Gonzalez, G. E. Janssens, I. A. Vizcarra, M. Heinemann, “Construction and use of a microfluidic dissection platform for long-term imaging of cellular processes in budding yeast”, Nature Protocols, 2013, 8, 1019-1027 (*equally contributed 1st author) [Link]
D. H. E. W. Huberts, G. E. Janssen, S. S. Lee, I. A. Vizcarra, M. Heinemann, “Continuous high-resolution microscopic observation of replicative aging in budding yeast”, Journal of Visualized Experiments, 2013, 78, e50143, doi:10.3791/50143 [Link]
K. Kang, S. S. Lee, K. Hyun, S. J. Lee, J. M. Kim, "DNA-based highly tunable particle focuser", Nature Communications, 2013, 4, 2567 doi:10.1038/ncomms3567 [Link]
2012
S. S. Lee, I. A. Vizcarra, D.H.E.W. Huberts, L. P. Lee, M. Heinemann, "Whole Lifespan Microscopic Observation of Budding Yeast Aging through a Microfluidic Dissection”, PNAS, 2012, 109, 4916-4920 [Link]
S. S. Lee, P. Horvath, S. Pelet, B. Hegemann, L. P. Lee, M. Peter, “Quantitative and Dynamic Assay of Single Cell Chemotaxis”, Integrative Biology, 2012, 4 (4) 381-390 [Link] (Top ten most accessed articles in Jan, Feb, Mar, Apr 2012)
J. Y. Kim, S. W. Ahn, S. S. Lee, J. M. Kim, “Lateral migration and focusing of colloidal particles and DNA molecules under viscoelastic flow”, Lab Chip, 2012, 12 (16) 2807-2814 [Link] (Front cover of journal)
S. Yang, S. S. Lee, S. W. Ahn, K. Kang, W. Shim, G. Lee, K. Hyun, J. M. Kim, “Deformability-Selective Particle Entrainment and Separation in a Rectangular Microchannel Using Medium Viscoelasticity”, Soft Matter 2012, 8 (18) 5011-5019 [Link]
C. Kraft, M. Kijanska, E. Kalie, E. Siergiejuk, S. S. Lee, G. Semplicio, I. Stoffel I. M. Verma, K. Hofmann, S. A. Tooze, M. Peter, “Binding of the Atg1/ULK1 kinase to the ubiquitin-like protein Atg8 regulates autophagy”, The EMBO Journal, 2012 31 (18) 3691-3703 [Link].
S. Pelet, R. Dechant, S. S. Lee, van F. Drogen, M. Peter, “An integrated image analysis platform to quantify signal transduction in single cells”, Integrative Biology, 2012 4 (10) 274-1282 [Link].
S. Cha, T. Shin, S. S. Lee, W. Shim, G. Lee, S. J. Lee, Y Kim, J. M. Kim, “Cell stretching measurement utilizing viscoelastic particle focusing”, Analytical Chemistry, 2012, 84 (23) 10471-10477 [Link].
2011
S. Yang, J. Y. Kim, S. J. Lee, S. S. Lee*, J. M. Kim*, “Sheathless elasto-inertial particle focusing and continuous separation in a straight rectangular microchannel”, Lab Chip, 2011, 11 (2) 266-273. (*corresponding author) [Link]
A. R. Kang, S. W. Ahn, S. J. Lee, B. Lee, S. S Lee*, J. M. Kim, “Medium viscoelastic effect on particle segregation in concentrated suspensions under rectangular microchannel flows”, Korea-Australia Rheology Journal, 2011, 23 (4) 247-254. (*corresponding author) [Link]
S. Yang, S. W. Ahn, A. R. Kang, D. W. Lee, S. S. Lee*, J. M. Kim, K. H. Ahn, S. J. Lee, “Effect of Local Kinematic History on the Dynamic Self-Assembly of Droplets in Micro-Expansion Channels”, Korea-Australia Rheology Journal, 2011, 23 (3) 119-126. (*corresponding author) [Link]
- 2010
R. Dechant, M. Binda, S. S. Lee, S. Pelet, J. Winderickx M. Peter, “Cytosolic pH is a second messenger for glucose and regulates the PKA pathway through V-ATPase”, The EMBO Journal, 2010, 29(15) 2515-2526 [Link] Featured in "The EMBO Journal : Have you seen...?"
S. S. Lee, Y. Yim, K. H. Ahn, S. J. Lee, “Extensional flow-based assessment of red blood cell deformability using hyperbolic converging microchannel”, Biomedical Microdevices, 2009, 11(5) 1021-1027 [Link].
S. S. Lee, J. F. Antaki, M. V. Kameneva, J. G. Dobbe, M. R. Hardeman, K. H. Ahn, S. J. Lee, “Strain hardening of red blood cell by accumulated cyclic supraphysiological stress”, Artificial Organs, 2007, 31 (1) 80-86 [Link].
S. S. Lee, E. H. Chae, D. J. Ahn, K. H. Ahn, J. K. Yeo, “Shear-induced color transition of PDA (polydiacetylene) liposome in polymeric solutions”, Korea-Australia Rheology Journal, 2007, 19 (1) 43-47[Link].
S. S. Lee, Y. Yim, N. J. Kim, K. H. Ahn, S. J. Lee, “Extension flow-induced red blood cell (RBC) deformation in the microchannel of contraction geometry”, International Journal of Vascular Biomedical Engineering, 2007, 5, 8-13
S. S. Lee, N. J. Kim, K. Sun, J. G. Dobbe, M. R. Hardeman, J. F. Antaki, K. H. Ahn, S. J. Lee, “Association between arterial stiffness and the deformability of red blood cells (RBCs)”, Clinical Hemorheology and Microcirculation, 2006, 34, 475-481 [Link].
S. S. Lee, K. H. Ahn, S. J. Lee, K. Sun, P. T. Goedhart, M. R. Hardeman, “Shear induced damage of red blood cells monitored by the decrease of their deformability”, Korea-Australia Rheology Journal, 2004, 16, 141-146.
K. H. Ahn, S. S. Lee, N. J. Kim, S. J. Lee, “Biorheology and rheological process technologies”, News & Information for Chemical Engineers, 2004, 22, 27-32. (Korean domestic)
Conference Abstract (Published in Journal)
S. J. Hund, M. V. Kameneva, S. S. Lee, “Evaluation of sub-lethal trauma to erythrocytes using mathematical modeling”, ASAIO Journal, 2011, 57(2) 97
S. S. Lee, N. J. Kim, J. F. Antaki, K. H. Ahn, S. J. Lee, J. A. Lee, “”, Biorheology, 2005, 42, 107.
N. J. Kim, S. S. Lee, K. H. Ahn, S. J. Lee, “Artery stiffness: Effect on red blood cell deformability”, Biorheology, 2005, 42, 170
K. H. Ahn, S. H. Kim, S. H. Kim, S. S. Lee, S. J. Lee, “Morphology control of hyaluronic acid/polyvinyl alcohol blend systems”, Biorheology, 2002, 39, 633
Conference Proceedings (Selected)
S. S. Lee, S. Oh, N. L. Jeon, M. Peter, “In-situ monitoring of single cell mechanotransduction via elastic microfluidic platform” EMBL Microfluidics 2012
S. S. Lee, H. Schober, S. Pelet, D. Reinhard, W. Krek, and M. Peter “Monitoring Intracellular Kinetics of Hepatocytes upon Dynamic Metabolic Environment via Automated Microfluidic platform: Microfluidics, Microscopy and Image analysis” 15th International Conference on miniaturized systems for chemistry and life sciences: µTAS 2011
M. Unger, S. S. Lee, M. Peter, H. Koeppl, Heinz, “Pulse Width Modulation of Liquids Flows”, 15th International Conference on miniaturized systems for chemistry and life sciences: µTAS 2011
S. S. Lee and L. P. Lee, “Quantitative Long-term Kinetic Monitoring of Amyloid Growth by Nanoplasmonic Optics”, 13th International Conference on Miniaturized Systems for Chemistry and Life Sciences, µTAS 2009
S. S. Lee, J. F. Lo, S. Pun and L. P. Lee, “Nanoscopic Monitoring of Cytochome c Nitrosylation by Plasmonic Resonance Energy Transfer (PRET)”, 13th International Conference on Miniaturized Systems for Chemistry and Life Sciences, µTAS 2009
S. Pun, S. S. Lee, J. F. Lo and L. P. Lee, “Elucidating Differential Modifications of Cytochrome C in Two Distinct Pathways of Programmed Cell Death By Label-Free and Real-Time Single Cell PRET Spectroscopy”, 13th International Conference on Miniaturized Systems for Chemistry and Life Sciences, µTAS 2009
S. S. Lee, Y. Yim, K. H. Ahn, S. J. Lee, Red blood cell deformation under extensional flow using hyperbolic converging shape microchannel, 10th International Conference on Miniaturized Systems for Chemistry and Life Sciences MicroTAS2006, Tokyo, Japan, Nov 5-9, 2006 (Widmer Prize for the best presenting innovative research)