Journal Articles
Journal Articles
M Javey, SJ Yaung. "Incorporating Genetic Biomarkers in WHO Classification of Lung Cancer." Journal of Thoracic Oncology 17:e79-80 (2022). PMID: 36031294
XM Ma, SJ Yaung. "Circulating tumor DNA as a therapy response marker in metastatic colorectal cancer." Oncoscience 9:33-34 (2022). PMID: 35769518
SJ Yaung, C Woestmann, C Ju, XM Ma, S Gattam, Y Zhou, L Xi, S Pal, A Balasubramanyam, N Tikoo, CP Heussel, M Thomas, M Kriegsmann, M Meister, MA Schneider, FJ Herth, B Wehnl, M Diehn, AA Alizadeh, JF Palma, T Muley. "Early Assessment of Chemotherapy Response in Advanced Non-small Cell Lung Cancer with Circulating Tumor DNA." Cancers 14:2479 (2022). PMID: 35626082
SJ Yaung, C Ju, S Gattam, A Nicholas, N Sommer, JC Bendell, HI Hurwitz, JJ Lee, F Casey, R Price, JF Palma. "Plasma-Based Measurements of Tumor Heterogeneity Correlate with Clinical Outcomes in Metastatic Colorectal Cancer." Cancers 14:2240 (2022). PMID: 35565368
SL Saelee, AF Lovejoy, B Hinzmann, K Mayol, S Huynh, A Harrell, J Lefkowitz, N Deodhar, G Garcia-Montoya, SJ Yaung, DM Klass. "Quantitative PCR based method to assess cfDNA quality, adjust input mass, and improve next-generation sequencing assay performance." Journal of Molecular Diagnostics 24:566-575 (2022). PMID: 35364322
SJ Yaung, A Pek. “From Information Overload to Actionable Insights: Digital Solutions for Interpreting Cancer Variants from Genomic Testing.” Journal of Molecular Pathology 2:312-318 (2021). Link
W Zou, SJ Yaung, F Fuhlbrück, M Ballinger, E Peters, JF Palma, DS Shames, D Gandara, Y Jiang, NS Patil. “ctDNA predicts overall survival in NSCLC patients treated with PD-L1 blockade or with chemotherapy.” JCO Precision Oncology 5:827-838 (2021). PMID: 34994614
SJ Yaung, F Fuhlbrück, M Peterson, W Zou, JF Palma, NS Patil, Y Jiang. “Clonal Hematopoiesis in Late-Stage Non–Small-Cell Lung Cancer and Its Impact on Targeted Panel Next-Generation Sequencing.” JCO Precision Oncology 4:1271-1279 (2020). PMID: 35050787
SJ Yaung, S Krishna, L Xi, C Ju, JF Palma, M Schmid. Assessment of a highly curated somatic oncology database to aid in the interpretation of clinically important variants in next-generation sequencing results. Journal of Molecular Diagnostics 22:1356-1366 (2020). PMID: 32961319
J Jiang, H-P Adams, M Lange, S Siemann, M Feldkamp, S McNamara, S Froehler, SJ Yaung, L Yao, A Balasubramanyam, N Tikoo, C Ju, HJ Achenbach, R Krügel, JF Palma. Plasma-Based Longitudinal Mutation Monitoring as a Potential Predictor of Disease Progression in Subjects with Adenocarcinoma in Advanced Non-Small Cell Lung Cancer. BMC Cancer 20:1-9 (2020). PMID: 32933495
XM Ma, J Bendell, HI Hurwitz, C Ju, JJ Lee, A Lovejoy, C Mancao, A Nicholas, R Price, N Sommer, N Tikoo, L Yao, SJ Yaung, JF Palma. Disease Monitoring Using Post-Induction Circulating Tumor DNA Analysis Following First-Line Therapy in Patients with Metastatic Colorectal Cancer. Clinical Cancer Research 26:4010-7 (2020). PMID: 32220893
J Jiang, H Adams, L Yao, S Yaung, P Lal, A Balasubramanyam, F Fuhlbrück, N Tikoo, AF Lovejoy, S Froehler, L Fang, HJ Achenbach, R Floegel, R Krügel, J Palma. Concordance of Genomic Alterations by Next-generation Sequencing in Tumor Tissue versus Cell-free DNA in Stage I–IV Non-Small Cell Lung Cancer. Journal of Molecular Diagnostics 22:228-235 (2019). PMID: 31837429
J Noé, A Lovejoy, SI Ou, SJ Yaung, W Bordogna, DM Klass, CA Cummings, AT Shaw. ALK Mutation Status Before and After Alectinib Treatment in Locally Advanced or Metastatic ALK-positive NSCLC: Pooled Analysis of Two Prospective Trials. Journal of Thoracic Oncology 15:601-608 (2019). PMID: 31712133
C Ronda, SP Chen, V Cabral, SJ Yaung, HH Wang. Metagenomic engineering of the mammalian gut microbiome in situ. Nature Methods 16:167-170 (2019). PMID: 30643213
JL Braff*, SJ Yaung*, KM Esvelt, GM Church. Characterization of Cas9-gRNA Orthologs. Cold Spring Harbor Lab Protocols 31-34 (2016). PMID: 27140923
JL Braff*, SJ Yaung*, KM Esvelt, GM Church. Characterizing Cas9 Protospacer-Adjacent Motifs with High-Throughput Sequencing of Library Depletion Experiments. Cold Spring Harbor Lab Protocols 35-38 (2016). PMID: 27140916
SJ Yaung, L Deng, N Li, JL Braff, GM Church, L Bry, HH Wang, GK Gerber. Improving microbial fitness in the mammalian gut using in vivo temporal functional metagenomics. Molecular Systems Biology 11:788 (2015). PMID: 26148351
SJ Yaung, KM Esvelt, GM Church. Complete Genome Sequences of T4-like Bacteriophages RB3, RB5, RB6, RB7, RB9, RB10, RB27, RB33, RB55, RB59, and RB68. Genome Announcements 3:e01122-14 (2015). PMID: 25555735
SJ Yaung*, KM Esvelt*, GM Church. CRISPR/Cas9-mediated phage resistance is not impeded by the DNA modifications of phage T4. PLOS ONE 9:e98811 (2014). PMID: 24886988
SJ Yaung, GM Church, HH Wang. Recent Progress in Engineering Human-associated Microbiomes, Methods in Molecular Biology 1151:3-25 (2014). PMID: 24838875
KM Esvelt, P Mali, JL Braff, M Moosburner, SJ Yaung, GM Church. Orthogonal Cas9 Proteins for RNA-guided Gene Regulation and Editing. Nature Methods 10:1116-1121 (2013). PMID: 24076762
G Zhou, A Moment, S Yaung, A Cote, T Hu. Evolution and Application of an Automated Platform for the Development of Crystallization Processes. Organic Process Research & Development 17:1320-1329 (2013). Link
PB Matthews, C Jhun, S Yaung, AN Azadani, JM Guccione, L Ge, EE Tseng. Finite Element Modeling of the Pulmonary Autograft at Systemic Pressure before Remodeling. Journal of Heart Valve Disease 20:45-52 (2011). PMID: 21404897