Centre Borelli (UMR 9010) | Université Paris Cité

AI-DSCy - Artificial Intelligence for Data Science and Cybersecurity

Research interests - Master degree|bachelor courses

• • • Supervised and Unsupervised learning

    • Co-Clustering

    • Natural Language Processing 

    • Ensemble learning

    • Deep learning

    • Network reconstruction and analysis

    • Causal inference

    • Biological data, biomedical textual data

Responsibilities

• • • Director of studies AMSD master M1 degree (Apprentissage Machine pour la Science des Données) [2021- ... ]

    • Director of studies MIAGE master degree (Information Technology Applied to Business Management) [2017-2021]

Project Coordinations

• • • ANR GePhEx research project funded by the French National Research Agency (2019, 36 months) 

Learning causal effects between phenome and exposome from large amounts of heterogeneous data in human complex diseases

• • • IDEX ML-Online, an IDEX Innovative Educational Project funded by the Université Paris Cité, as part of the Investments of the Future programme (2021, 12 months)

ICAN - Post-doc (Institute of Cardiometabolism and Nutrition, Paris) [2015-2016]

• • Causal analysis and identification of direct/indirect effects in high dimensional data

  • Spectral clustering and ensemble methods for high dimensional data

Institut Curie, Isambert Lab - Ph.D. (Research Center, Paris) [2011-2015]

• • Design of novel learning approaches based on information theoretic measures

  • Causal inference and analysis in systems biology

(Professional retraining)

Dassault Systèmes - Software engineer (R&D department, Vélizy) [2007-2010] 

• • Optimisation of static analysis tools

  • Redesign, implementation and test

EOS Imaging, Software engineer  (R&D department, Paris) [2005-2006]

• • Optimisation of the radiology device guidance system

  • User interface and peripherals monitoring system redesign

Siemens AG. - Software engineer trainee (Research Center, Munich) [2005]

• Test design for an erbium-doped fiber laser amplifier

• Analysis and simulations of a new fibre-optic communication network

Canon Inc. - Software engineer trainee (Research Center, Morinosato Japan) [2003-2004]

• • Analysis of particles migration in an e-ink technology paper

  • Images acquisition and processing, 3D reconstruction of migration trajectories

Ph.D. in Computer Science, Pierre and Marie Curie University [2011-2015] 

Network reconstruction and causal analysis in systems biology (manuscript)

• • Mediation analysis in genomic data (genetic diseases and fate of duplicated genes)

  • Design and implementation of new approaches for causal network discovery

(Professional retraining)

Master in Computer Science - Bioinformatics and Modeling, Pierre and Marie Curie University [2010-2011] 

• • M2 Internship (Institut Curie, Research Center, Paris) Evolution of signaling pathways implicated in cancers

  • Quantification and analysis of selection pressure on protein sequence

  • Pipeline design and implementation for duplicated sequence analysis

(Professional retraining)

Engineer Diploma - ENSEA (Graduate school of electrical engineering and computer science) [2001-2005]

Speciality: Biomedical Engineering

• • 3rd year Internship - Analysis of modulated signals in optical communication (Siemens AG., Research Center Munich, Germany)

  • 2nd year Internship - Design of an analysis system for e-ink paper evaluation (Canon Inc., Research Center Morinosato, Japan) 

• [2021] Scientific committee member, Journées Francophones sur les Réseaux Bayésiens et les Modèles Graphiques Probabilistes (JRBF21)

• [2019] Program committee member, Learning Data Representation for Clustering (PAKDD workshop LDRC19)

• [2018] Program committee member, Deep Learning and Clustering (IEEE ICDM workshop DLC2018)

• [2018] Conference Co-chair, XXVèmes Rencontres de la Société Francophone de Classification (SFC2018)

• Advances in Data Analysis and Classification (ADAC)

• Pattern Recognition (PR)

• Applied Soft Computing (ASOC)

• Journal of Machine Learning Research (JMLR)

• • [2014] 4th year thesis (Fondation ARC, 12 months)

  • [2013] Runner-up for oral communication at ISMB-Student Council Symposium 2013

  • [2011] Ministry of National Education, Higher Education, Training and Scientific Research grant (Doctoral School EDITE Paris, 3 years)

  • [2010] Ile-de-France region grant for professional retraining after more than 5 years as software engineer (Fongecif, 12 months)

  • [2003] Vulcanus in Japan training programme - hosted by Canon Research Center (EU-Japan Centre for Industrial Cooperation, 12 months)