Software
This site is not up to date, please visit my official QUT lab webpage at https://research.qut.edu.au/sgel/
By Dale R Nyholt
Utilise our user-friendly web-based application SECA, to perform SNP effect concordance analysis using genome-wide association summary results (Nyholt 2014).
Utilise our user-friendly web-based application iSECA, to perform SNP effect concordance analysis using genome-wide association summary results for independent SNPs (Nyholt 2014).
See our tutorial on how to perform LD clumping using theĀ PLINK program (Purcell et al 2007)
Use our ZygProb web interface and access other details related to twin pair (Nyholt 2006).
Utilise our SNPSpD method of correcting for non-independence of SNPs in LD with each other (Nyholt 2004).
Similar to our SNPSpD approach, use matSpD to estimate the equivalent number of independent variables for a correlation (r) matrix.
Download our MS Excel worksheet to allow easy conversion of commonly used LOD scores to P-values (Nyholt 2000)
By Huiying Zhao
Utilise the user-friendly web-based application DGAT, for detecting gene associations on traits by enrichment of SNPs in functional categories (Zhao et al 2016).