Software

By Dale R Nyholt

  • Utilise our user-friendly web-based application SECA, to perform SNP effect concordance analysis using genome-wide association summary results (Nyholt 2014).

  • Utilise our user-friendly web-based application iSECA, to perform SNP effect concordance analysis using genome-wide association summary results for independent SNPs (Nyholt 2014).

  • See our tutorial on how to perform LD clumping using the PLINK program (Purcell et al 2007)

  • Use our ZygProb web interface and access other details related to twin pair (Nyholt 2006).

  • Utilise our SNPSpD method of correcting for non-independence of SNPs in LD with each other (Nyholt 2004).

  • Similar to our SNPSpD approach, use matSpD to estimate the equivalent number of independent variables for a correlation (r) matrix.

  • Download our MS Excel worksheet to allow easy conversion of commonly used LOD scores to P-values (Nyholt 2000)

By Huiying Zhao

  • Utilise the user-friendly web-based application DGAT, for detecting gene associations on traits by enrichment of SNPs in functional categories (Zhao et al 2016).