Embedded Files
2024
Adji BI, Wang X, Letort V, Akaffou DS, Sabatier S, Kang M, Kouassi KH, Barima YS, Duminil J, Jaeger M, De Reffye P (2024) Stochastic modelling of development and biomass allocation: Computation applied to architecture of young mahogany trees (Khaya senegalensis Desr. A. Juss), a native African savannah emblematic agroforestry species. Computers and Electronics in Agriculture 220:108864
Agyare RY, Kaczmarek T, Leclerc C, Puozaa DK, Tengey TK, Bonsu SK, Kombiok JM, Causse S, Guillerminet T, Kena AW, Adjebeng-Danquah J, Barnaud A, Billot C, Akromah R (2024) Revealing Ghana’s unique fonio genetic diversity: leveraging farmers knowledge for sustainable conservation and breeding strategies. Genetic Resources and Crop Evolution
Battesti Vi, Gros-Balthazard M (2024) Varietal diversity and cultivation practices of the date palm in the AlUla oasis. In Al Ula, Wonder of Arabia (p. 208). SKIRA
Belton S, Cubry P, Roche JR, Kelleher CT (2024) Molecular characterisation of Pinus sylvestris (L.) in Ireland at the western limit of the species distribution. BMC Ecololy and Evolution 24:12
Bourgeois B, Warren BH, Augiron S (2024) The burden of anthropogenic changes and mutation load in a critically endangered harrier from the Reunion biodiversity hotspot, Circus maillardi. Molecular Ecology 33(6):e17300
Couvreur TLP, Jijon N, Montúfar R, Morales-Morales PA, Sanín MJ, Copete JC, Lozinguez A, Pérez AJ, Beech E (2024) Diversity and conservation status of palms (Arecaceae) in two hotspots of biodiversity in Colombia and Ecuador. Plants People Planet 6(4):885-901
Dagallier LPMJ, Condamine FL, Couvreur TLP (2024) Sequential diversification with Miocene extinction and Pliocene speciation linked to mountain uplift explains the diversity of the African rain forest clade Monodoreae (Annonaceae). Annals of Botany 133(5-6):677-696
Debels P, Drieu L, Chiquet P, Studer J, Malergue A, Martignac L, Champion L, Garnier A, Fichet V, Sall M, Regert M, Mayor A (2024) Investigating grandmothers’ cooking: A multidisciplinary approach to foodways on an archaeological dump in Lower Casamance, Senegal. PLoS ONE 19(5):e0295794
de la Fuente C, Grondin A, Sine B, Debieu M, Belin C, Hajjarpoor A, Atkinson JA, Passot S, Salson M, Orjuela J, Tranchant-Dubreuil C, Brossier JR, Steffen M, Morgado C, Dinh HN, Pandey BK, Darmau J, Champion A, Petitot AS, Barrachina C, Pratlong M, Mounier T, Nakombo-Gbassault P, Gantet P, Gangashetty P, Guedon Y, Vadez V, Reichheld JP, Bennett MJ, Kane NA, Guyomarc'h S, Wells DM, Vigouroux Y, Laplaze L (2024) Glutaredoxin regulation of primary root growth is associated with early drought stress tolerance in pearl millet. eLife 12:RP86169
Fuks D, Schmidt F, García-Collado MI, Besseiche M, Payne N, Bosi G, Bouchaud C, Castiglioni E, Dabrowski V, Frumin S, Fuller DQ, Hovsepyan R, Muthukumaran S, Peña-Chocarro L, Jordá GP, Ros J, Rottol, M, Ryan P, Spengler R, Stevens CJ, Valamoti SM, Weiss E, Alexander M, Gros-Balthazard M (2024) Orphan crops of archaeology-based crop history research. Plants People Planet
Fuller DQ, Champion L, Cobo Castillo C, den Hollander A (2024) Cotton and post-Neolithic investment agriculture in tropical Asia and Africa, with two routes to West Africa. Journal of Archaeological Science: Reports 57:104649
Horvath R, Minadakis N, Bourgeois Y, Roulin AC (2024) The evolution of transposable elements in Brachypodium distachyon is governed by purifying selection, while neutral and adaptive processes play a minor role. eLife 12:RP93284
Ivorra S, Tengberg M, Bonhomme V, Kaczmarek T, Pastor T, Terral JF, Gros-Balthazard M (2024) Leveraging the potential of charred archaeological seeds for reconstructing the history of date palm. Journal of Archaeological Science 170:106052
Kaczmarek T, Van der Veen M, Ivorra S, Mattingly D, Terral JF, Gros-Balthazard M (2024) Origins and evolution of oasis agriculture in the Sahara: Evidence from morphometric analyses of archaeological date palm seeds. The Holocene 34(3):353-365
Lopes JC, Fonseca LHM, Johnson DM, Luebert F, Murray N, Nge F, Rodrigues-Vaz C, Soulé V, Onstein RE, Lohmann LG, Couvreur TLP (2023) Dispersal from Africa to the Neotropics was followed by multiple transitions across Neotropical biomes facilitated by frugivores. Annals of Botany 133(5-6):659-676
Mboujda FMM, Rimlinger A, Tientcheu MLA, Boupoya A, Moupela C, Tankou C, Duminil J, Carrière SM (2024) Diversity of Uses and Local Knowledge Associated with Wild African Plum Trees, Dacryodes edulis, Among Different Ethnic Groups in the Congo Basin. Economic Botany
Minadakis N, Kaderli L, Horvath R, Bourgeois Y, Xu W, Thieme M, Woods DP, Roulin AC (2024) Polygenic architecture of flowering time and its relationship with local environments in the grass Brachypodium distachyon. Genetics 227(1):iyae042
Millet CP, Allinne C, Vi T, Marraccini P, Verleysen L, Couderc M, Ruttink T, Zhang D, Solano Sanchéz W, Jeune W, Poncet V (2024) Haitian coffee agroforestry systems harbor complex arabica variety mixtures and under-recognized genetic diversity. PLoS ONE 19(4): e0299493
Poncet V, van Asten P, Millet CP, Vaast P, Allinne C (2024) Which diversification trajectories make coffee farming more sustainable? Current Opinion in Environmental Sustainability 68:101432
Pryce TO, Pradier B, Favereau A, Oo USN, Le Meur C, Oo DKT, Aye UA, Win DTT, Langowska KA, Hanus K, Iizuka Y, Georgon C, Zhuang Y, Castillo C, Fuller D, Win DHS, Aung DHMK, Champion L, Oo UMM, Oo UMN, Phyo UZ, Maung UPW, Myat DYM, Zaw UT, Paibool KA, Domethong KV, Willis A, Higham CFW, Higham TFG (2024) Late prehistoric and early historic chronology of Myanmar: a four-millennia sequence from Halin. Antiquity 98(397):30-47
Rimlinger A, Duminil J, Avana-Tientcheu ML, Carrière SM (2024) Can seed exchange networks explain the morphological and genetic diversity in perennial crop species? The case of the tropical fruit tree Dacryodes edulis in rural and urban Cameroon. Plants People Planet 6(2):421-436
Robin-Soriano A, Maurice K, Boivin S, Bourceret A, Laurent-Webb L, Youssef S, Nespoulous J, Boussière I, Berder J, Damasio C, Vincent B, Boukcim H, Ducousso M, Gros-Balthazard M (2024) Absence of Gigasporales and rarity of spores in a hot desert revealed by a multimethod approach. Mycorrhiza 34:251-270
Salojärvi J, Rambani A, Yu Z, Guyot R, Strickler S, Lepelley M, Wang C, Rajaraman S, Rastas P, Zheng C, Santos Muñoz D, Meidanis J, Rossi Paschoal A, Bawin Y, Krabbenhoft TJ, Wang ZQ, Fleck SJ, Aussel R, Bellanger L, Charpagne A, Fournier C, Kassam M, Lefebvre G, Métairon S, Moine D, Rigoreau M, Stolte J, Hamon P, Couturon E, Tranchant-Dubreuil C, Mukherjee M, Lan T, Engelhardt J, Stadler P, Correia De Lemos SM, Ivamoto Suzuki S, Sumirat U, Wai CM, Dauchot N, Orozco-Arias S, Garavito A, Kiwuka C, Musoli P, Nalukenge A, Guichoux E, Reinout H, Smit M, Carretero-Paulet L, Guerreiro Filho O, Toma Braghini M, Padilha L, Hiroshi Sera G, Ruttink T, Henry R, Marraccini P, Van de Peer Y, Andrade A, Domingues D, Giuliano G, Mueller L, Pereira LP, Plaisance S, Poncet V, Rombauts S, Sankoff D, Albert VA, Crouzillat D, de Kochko A, Descombes P (2024) The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Nature Genetics 56:721-731
Scarcelli N, Garcia Davila C, Couderc M, Castro Ruiz D, Estivals G, Angulo Chavez CAC, Acho Vasquez H, Alvarado Reategui JG, Vizcarra Bentos T, Mariac C (2024) The complete chloroplast genome of Marupa (Simarouba amara Aubl., Simaroubaceae). Ecology and Evolution 17(7):e11688
Zunino L, Cubry P, Sarah G, Mournet P, El Bakkali A, Aqbouch L, Sidibé-Bocs S, Costes E, Khadari B (2024) Genomic evidence of genuine wild versus admixed olive populations evolving in the same natural environments in western Mediterranean Basin. PLoS ONE 19(1):e0295043
Zuntini AR, Carruthers T, Maurin O Bailey PC, Leempoel K, Brewer GE, Epitawalage N, Françoso E, Gallego-Paramo B, McGinnie C, Negrão R, Roy SR, Simpson L, Toledo Romero E, Barber VMA, Botigué L, Clarkson JJ, Cowan RS, Dodsworth S, Johnson MG, Kim JT, Pokorny L, Wickett NJ, Antar GM, DeBolt L, Gutierrez K, Hendriks KP, Hoewener A, Hu AQ, Joyce EM, Kikuchi IABS, Larridon I, Larson DA, de Lírio EJ, Liu JX, Malakasi P, Przelomska NAS, Shah T, Viruel J, Allnutt TR, Ameka GK, Andrew RL, Appelhans MS, Arista M, Ariza MJ, Arroyo J, Arthan W, Bachelier JB, Bailey CD, Barnes HF, Barrett MD, Barrett RL, Bayer RJ, Bayly MJ, Biffin E, Biggs N, Birch JL, Bogarín D, Borosova R, Bowles AMC, Boyce PC, Bramley GLC, Briggs M, Broadhurst L, Brown GK, Bruhl JJ, Bruneau A, Buerki S, Burns E, Byrne M, Cable S, Calladine A, Callmander MW, Cano A, Cantrill DJ, Cardinal-McTeague WM, Carlsen MM, Carruthers AJA, de Castro Mateo A, Chase MW, Chatrou LW, Cheek M, Chen S, Christenhusz MJM, Christin PA, Clements MA, Coffey SC, Conran JG, Cornejo X, Couvreur TLP, Cowie ID, Csiba L, Darbyshire I, Davidse G, Davies NMJ, Davis AP, van Dijk KJ, Downie SR, Duretto MF, Duvall MR, Edwards SL, Eggli U, Erkens RHJ, Escudero M, de la Estrella M, Fabriani F, Fay MF, Ferreira P, Ficinski SZ, Fowler RM, Frisby S, Fu L, Fulcher T, Galbany-Casals M, Gardner EM, German DA, Giaretta A, Gibernau M, Gillespie LJ, González CC, Goyder DJ, Graham SW, Grall A, Green L, Gunn BF, Gutiérrez DG, Hackel J, Haevermans T, Haigh A, Hall JC, Hall T, Harrison MJ, Hatt SA, Hidalgo O, Hodkinson TR, Holmes GD, Hopkins HCF, Jackson CJ, James SA, Jobson RW, Kadereit G, Kahandawala IM, Kainulainen K, Kato M, Kellogg EA, King GJ, Klejevskaja B, Klitgaard BB, Klopper RR, Knapp S, Koch MA, Leebens-Mack JH, Lens F, Leon CJ, Léveillé-Bourret E, Lewis GP, Li DZ, Li L, Liede-Schumann S, Livshultz T, Lorence D, Lu M, Lu-Irving P, Luber J, Lucas EJ, Luján M, Lum M, Macfarlane TD, Magdalena C, Mansano VF, Masters LE, Mayo SJ, McColl K, McDonnell AJ, McDougall AE, McLay TGB, McPherson H, Meneses RI, Merckx VSFT, Michelangeli FA, Mitchell JD, Monro AK, Moore MJ, Mueller TL, Mummenhoff K, Munzinger J, Muriel P, Murphy DJ, Nargar K, Nauheimer L, Nge FJ, Nyffeler R, Orejuela A, Ortiz EM, Palazzesi L, Peixoto AL, Pell SK, Pellicer J, Penneys DS, Perez-Escobar OA, Persson C, Pignal M, Pillon Y, Pirani JR, Plunkett GM, Powell RF, Prance GT, Puglisi C, Qin M, Rabeler RK, Rees PEJ, Renner M, Roalson EH, Rodda M, Rogers ZS, Rokni S, Rutishauser R, de Salas MF, Schaefer H, Schley RJ, Schmidt-Lebuhn A, Shapcott A, Al-Shehbaz I, Shepherd KA, Simmons MP, Simões AO, Simões ARG, Siros M, Smidt EC, Smith JF, Snow N, Soltis DE, Soltis PS, Soreng RJ, Sothers CA, Starr JR, Stevens PF, Straub SCK, Struwe L, Taylor JM, Telford IRH, Thornhill AH, Tooth I, Trias-Blasi A, Udovicic F, Utteridge TMA, Del Valle JC, Verboom GA, Vonow HP, Vorontsova MS, de Vos JM, Al-Wattar N, Waycott M, Welker CAD, White AJ, Wieringa JJ, Williamson LT, Wilson TC, Wong SY, Woods LA, Woods R, Worboys S, Xanthos M, Yang Y, Zhang YX, Zhou MY, Zmarzty S, Zuloaga FO, Antonelli A, Bellot S, Crayn DM, Grace OM, Kersey PJ, Leitch IJ, Sauquet H, Smith SA, Eiserhardt WL, Forest F, Baker WJ (2024) Phylogenomics and the rise of the angiosperms. Nature 629:843-850
2023
Adam H, Gutiérrez A, Couderc M, Sabot F, Ntakirutimana F, Serret J, Orjuela J, Tregear J, Jouannic S, Lorieux M (2023) Genomic introgressions from African rice (Oryza glaberrima) in Asian rice (O. sativa) lead to the identification of key QTLs for panicle architecture. BMC Genomics 24:587
Adji BI, Letort V, Wang X, Kang M, De Reffye P, Jaeger M, Cilas C, Kouassi KH, Duminil J, Sabatier S, Akaffou DS (2023) Rethinking Iconic Species Reforestation in West Africa: Seed Shape Harnessing Is Strategic for Enhanced Germination and Vigorous Growth in Khaya senegalensis and Parkia biglobosa. Forests 14(7):131
Alarcon-Mendez M, Maselli S, van Zonneveld M, Loo J, Snook L, Oliva A, Franco A, Duminil J (2023) Implications of community forest management for the conservation of the genetic diversity of big-leaf mahogany (Swietenia macrophylla King, Meliaceae) in the Maya Biosphere Reserve, Petén, Guatemala. Trees, Forests and People 11:100362
Bonnamy M, Pinel-Galzi A, Gorgues L, Chalvon V, Hébrard E, Chéron S, Nguyen TH, Poulicard N, Sabot F, Pidon H, Champion A, Césari S, Kroj T, Albar L (2023) Rapid evolution of an RNA virus to escape recognition by a rice nucleotide-binding and leucine-rich repeat domain immune receptor. New Phytologist
Champion L (2023) Pearl Millet. In The Encyclopedia of Ancient History (eds Potts D, Harkness E, Neelis J and McIntosh R)
Champion L, Höhn A, Neumann K, Franke G, Breunig P (2023) A question of rite—pearl millet consumption at Nok culture sites, Nigeria (second/first millennium BC). Vegetation History and Archaeobotany 32:263-283
Cisse A, Clermont-Dauphin C, Sall SN, Gie S, Groupement MP, Ndiaye A, Diouf M, Traore B, Ndir K, Kane NA, Renard D, Violle C, Barnaud A, Berthouly-Salazar C (2023) Sahelian smallholders' varietal mixtures reconcile yield and agrobiodiversity conservation. Basic and Applied Ecology 67:48-60
Dagallier LPMJ, Mbago FM, Couderc M, Gaudeul M, Grall A, Loup C, Wieringa JJ, Sonké B, Couvreur TLP (2023) Phylogenomic inference of the African tribe Monodoreae (Annonaceae) and taxonomic revision of Dennettia, Uvariodendron and Uvariopsis. PhytoKeys 233:1-200
Diop BM, Guèye MC, Leclerc C, Deu M, Zekraoui L, Calatayud C, Rivallan R, Kaly JR, Cissé M, Piquet M, Diack O, Ngom A, Berger A, Ndoye I, Ndir K, Vigouroux Y, Kane NA, Barnaud A, Billot C (2023) Ethnolinguistic and genetic diversity of fonio (Digitaria exilis) in Senegal. Plants People Planet
Estivals G, Duponchelle F, García-Dávila C, Römer U, Mariac C, Renno JF (2023) Exceptional Genetic Differentiation at a Micro-geographic Scale in Apistogramma agassizii (Steindachner, 1875) from the Peruvian Amazon: Sympatric Speciation? Evolutionary Biology 50:1-17
Gain C, Rhoné B, Cubry P, Salazar I, Forbes F, Vigouroux Y, Jay F, François O (2023) A Quantitative Theory for Genomic Offset Statistics. Molecular Biology and Evolution 40:msad140
Gosline G, Bidault E, van der Burgt X, Cahen D, Challen G, Condé N, Couch C, Couvreur TLP, Dagallier LPMJ, Darbyshire I, DawsonS, Seny Doré T, Goyder D, Grall A, Haba P, Haba P, Harris D, Hind DJN, Jongkind C, Konomou G, Larridon I, Lewis G, Ley A, Lock M, Lucas E, Magassouba S, Mayo S, Molmou D, Monro A, Onana JM, Paiva J, Paton A, Phillips S, Prance H, Quintanar A, Rokni S, Shah T, Schrire B, Schuiteman A, Giraldes Simões AR, Sosef M, Stévart T, Stone RD, Utteridge T, Wilkin P, Xanthos M, Lughadha EN, Cheek M (2023) A Taxonomically-verified and Vouchered Checklist of the Vascular Plants of the Republic of Guinea. Scientific Data 10:327
Kiwuka C, Vos J, Douma JC, Musoli P, Mulumba JW, Poncet V, Anten NPR (2023) Intraspecific variation in growth response to drought stress across geographic locations and genetic groups in Coffea canephora. Ecology and Evolution 13:e9715
Kaczmarek T, Causse S, Abdul SD, Abraham S, Achigan-Dako EG, Adje C, Adjebeng-Danquah J, Agyare RY, Akanvou L, Bakasso Y, Barry MB, Bonsu SK, Calatayud C, Conde S, Couderc M, Dachi SN, Diallo T, Diop MB, Deu M, Gueye MC, Bio Yerima ARI, Issah AR, Kane NA, Keita Y, Kombiok J, Ngom A, Noyer JL, Olodo K, Oselebe HO, Pham JL, Piquet M, Puozaa DK, Rivallan R, Saidou S, Sekloka E, Tengey TK, Uyoh EA, Vancoppenolle S, Vigouroux Y, Zekraoui L, Leclerc C, Barnaud A, Billot C (2023) Towards conservation and sustainable use of an indigenous crop: A large partnership network enabled the genetic diversity assessment of 1539 fonio (Digitaria exilis) accessions. Plants People Planet
Kusuma J, Couderc M, Scarcelli N, J Duminil (2023) Complete chloroplast genome of two nutmeg species, Myristica argentea Warb. 1891 and Myristica fatua Houtt. 1774 (Myristicaceae). Mitochondrial DNA Part B 8:751-755
Lemoine T, Rimlinger A, Duminil J, Leclerc C, Labeyrie V, Tsogo M, Carrière SM (2023) Untangling Biocultural and Socioeconomical Drivers of African Plum Tree (Dacryodes edulis) Local Nomenclature Along a Rural-Urban Gradient in Central Cameroon. Human Ecology
Martínez-Velarde MF, Rodrigues-Vaz C, Soulé V, Nge FJ, Schatz GE, Couvreur TLP, Ortiz-Rodriguez AE (2023) Desmopsis terriflora, an extraordinary new species of Annonaceae with flagelliflory. PhytoKeys 227:181-198
Matra DD, Adrian M, Karmanah, Kusuma J, Duminil J, Sobir, Poerwanto R (2023) Dataset from de novo transcriptome assembly of Myristica fatua leaves using MinION nanopore sequencer. Data in Brief 46:108838
Mohamed M, Sabot F, Varoqui M, Mugat B , Audouin K, Pélisson A, Fiston-Lavier AS, Chambeyron S (2023) TrEMOLO: accurate transposable element allele frequency estimation using long-read sequencing data combining assembly and mapping-based approaches. Genome Biology 24:63
Ntakirutimana F, Tranchant-Dubreuil C, Cubry P, Chougule K, Zhang J, Wing RA, Adam H, Lorieux M, Jouannic S (2023) Genome-wide association analysis identifies natural allelic variants associated with panicle architecture variation in African rice, Oryza glaberrima Steud. G3 Genes|Genomes|Genetics 13(10):jkad174
Ollier C, Champion L, Rasse M, Mayor A (2023). « Ce sont les femmes qui savent ». L'expertise agroécologique des rizicultrices à l'aune des changements environnementaux globaux en Basse-Casamance (Sénégal). Anthropology of food 17
Peñuela M, Riccio-Rengifo C, Finke J, Rocha C, Gkanogiannis A, Wing RA, Lorieux M (2023) Prediction of crossover recombination using parental genomes. PLoS ONE 18(2): e0281804
Persson C, Eriksen B, Pérez AJ, Zapata JN, Couvreur TLP, Sklenár P (2023) Three new species of Valeriana (Valerianoideae, Caprifoliaceae) from southern Ecuador. Phytotaxa 579(1):47-53
Peticca A, Fodil M, Gateau H, Mouget JL, Sabot F, Chenais B, Casse N (2023) Complete mitochondrial genome and draft chloroplastic genome of Haslea ostrearia (Simonsen 1974). Mitochondrial DNA Part B 8(10):1092-1096
Ramirez-Nieblas L, Mulumbwa Luna O, Ndjondjo Manga JP, Mayo W, Mambu Nsangathi C, Nkulu Kalwanika S, Komba Yendema M, Champion L, Cornelissen E, Nikis N, Ricquier B, Livingstone Smith A (2023) Mission 2022 Du Projet BANTURIVERS Dans La Province de La Tshopo (RDC) : Ubundu, Wanye-Rukula et Kisangani. Nyame Akuma 99:35-42
Reifová R, Ament-Velásquez SL, Bourgeois Y, Coughlan J, Kulmuni J, Lipinska AP, Okude G, Stevison L, Yoshida K, Kitano J (2024) Mechanisms of Intrinsic Postzygotic Isolation: From Traditional Genic and Chromosomal Views to Genomic and Epigenetic Perspectives. Cold Spring Harbor Perspectives in Biology 15(10):a041607
Robson JK, Ferguson JN, McAusland L, Atkinson JA, Tranchant-Dubreuil C, Cubry P, Sabot F, Wells DM, Price AH, Wilson ZA, Murchie EH (2023) Chlorophyll fluorescence-based high-throughput phenotyping facilitates the genetic dissection of photosynthetic heat tolerance in African (Oryza glaberrima) and Asian (Oryza sativa) rice. Journal of Experimental Botany erad239
Sabot F (2023) On the importance of metadata when sharing and opening data. BMC Genomic Data 23:79
Salson M, Orjuela J, Mariac C, Zekraouï L, Couderc M, Arribat S, Rodde N, Faye A, Kane NA, Tranchant-Dubreuil C, Vigouroux Y, Berthouly-Salazar B (2023) An improved assembly of the pearl millet reference genome using Oxford Nanopore long reads and optical mapping. G3 Genes|Genomes|Genetics 13:jkad051
Schatz GE, Ortiz-Rodriguez AE, Martínez-Velarde MF, Couvreur TLP (2023) New Combinations and New Names in Desmopsis (Annonaceae). Novon 31
Scotti I, Lalagüe H, Oddou-Muratorio S, Scotti-Saintagne C, Ruiz Daniels R, Grivet D, Lefevre F, Cubry P, Fady B, González-Martínez SC, Roig A, Lesur-Kupin I, Bagnoli F, Guerin V, Plomion C, Rozenberg P, Vendramin GG (2023) Common microgeographical selection patterns revealed in four European conifers. Molecular Ecology 32:393-411
Sedah P, Djedatin LG, Loko, LYE, Ewedje EEBK, Orobiyi A, Gbemavo CDSJ, Toffa J, Tchakpa C, Cubry P, Sabot F (2023) Impact of Seed Origin and Genetic Drift of Improved Rice Variety IR841 in Benin. Rice 16:48
Sedah P, Djedatin LG, Loko, LYE, Gbemavo CDSJ, Orobiyi A, Toffa J, Tchakpa C, Ewedje EEBK, Sabot F (2023) Agro-morphological and structural diversity of rice germplasm revealed by SSR markers in Benin Republic. Molecular Biology Reports 50:10207-10217
Silva A, Montoya ME, Quintero C, Cuasquer J, Tohme J, Graterol E, Cruz M, Lorieux M (2023) Genetic bases of resistance to the rice hoja blanca disease deciphered by a quantitative trait locus approach. G3 Genes|Genomes|Genetics 13(12):jkad223
Tenaillon MI, Burban E, Huynh S, Wojcik A, Thuillet AC, Manicacci D, Gérard PR, Alix K, Belcram H, Cornille A, Brault M, Stevens R, Lagnel J, Dogimont C, Vigouroux Y, Glémin S (2023) Crop domestication as a step toward reproductive isolation. American Journal of Botany 110:e16173
Tranchant-Dubreuil C, Chenal C, Blaison M, Albar L, Klein V, Mariac C, A Wing R, Vigouroux Y, Sabot F (2023) FrangiPANe, a tool for creating a panreference using left behind reads. NAR Genomics and Bioinformatics 5(1):lqad013
Vi T, Vigouroux Y, Cubry P, Marraccini P, Phan HV, Khong GN, Poncet V (2023) Genome-Wide Admixture Mapping Identifies Wild Ancestry-of-Origin Segments in Cultivated Robusta Coffee. Genome Biology and Evolution 15:evad065
Verleysen L, Bollen R, Kambale JL, Ebele T, Ntumba Katshela B, Depecker J, Poncet V, Assumani DM, Vandelook F, Stoffelen P, Honnay o, Ruttink T (2023) Characterization of the genetic composition and establishment of a core collection for the INERA Robusta coffee (Coffea canephora) field genebank from the Democratic Republic of Congo. Frontiers in Sustainable Food Systems 7
Yao TL, Nazre M, McKey D, Jalonen R, Duminil J (2023) The origin of cultivated mangosteen (Garcinia mangostana L. var. mangostana): Critical assessments and an evolutionary-ecological perspective. Ecology and Evolution
Yogom BT, Avana-Tientcheu ML, Monthé FK, Bissiengou P, Loumeto JJ, Zekraoui L, Hervouet C, Fonkou T, Mariac C, Duminil J (2023) Genetic diversity and structure in wild and cultivated populations of an emblematic African tree species, Garcinia kola (Clusiaceae). Tree Genetics & Genomes 19(39)
Zhou Y, Yu Z, Chebotarov D, Chougule K, Lu Z, Rivera LF, Kathiresan N, Al-Bader N, Mohammed N, Alsantely A, Mussurova S, Santos J, Thimma M, Troukhan M, Fornasiero A, Green CD, Copetti D, Kudrna D, Llaca V, Lorieux M, Zuccolo A, Ware D, McNally K, Zhang J, Wing RA (2023) Pan-genome inversion index reveals evolutionary insights into the subpopulation structure of Asian rice. Nature Communication 14:1567
2022
Acosta MCB, Montúfar R, Guyot R, Mariac C, Tranbarger TJ, Restrepo S, Couvreur TLP (2022) Bactris gasipaes Kunth var. gasipaes complete plastome and phylogenetic analysis. Mitochondrial DNA Part B 7:1540-1544
Affortit P, Effa-Effa B, Ndoye MS, Moukouanga D, Luchaire N, Cabrera-Bosquet L, Perálvarez M, Pilloni R, Welcker C, Champion A, Gantet P, Diedhiou AG, Manneh B, Aroca R, Vadez V, Laplaze L, Cubry P, Grondin A (2022) Physiological and genetic control of transpiration efficiency in African rice, Oryza glaberrima Steud. Journal of Experimental Botany erac156.
Amoussou BEN, Idohou R, Glèlè Kakaï R, Dauby G, Couvreur TLP (2022) Impact of end-of-century climate change on priority non-timber forest product species across tropical Africa. African Journal of Ecology 60:1120-1132
de Aquino SO, Kiwuka C, Tournebize R, Gain C, Marraccini P, Mariac C, Bethune K, Couderc M, Cubry P, Andrade AC, Lepelley M, Darracq O, Crouzillat D, Anten N, Musoli P, Vigouroux Y, de Kochko A, Manel S, François O, Poncet V (2022) Adaptive potential of Coffea canephora from Uganda in response to climate change. Molecular Ecology 31:1800-1819
Bellina B, Petchey P, Shoocongdej R, Pradier B, Favereau A, Innanchai J, Castillo C, Champion L, Khaokhiew C, Hrysiewicz B (2022) Wang Duan: Upper Thai-Malay Peninsula coastal groups during the early and late Neolithic period. Archaeological Research in Asia 30:100368
Couvreur TLP, Cornejo X, Zapata JN, Loor A (2022) Two new magnoliid (Annonaceae, Lauraceae) tree species from Manabí, western Ecuador. Blumea 67:97-108
Couvreur TLP, Dagallier LPMJ, Crozier F, Ghogue JP, Hoekstra PH, Kamdem NG, Johnson DM, Murray NA, Sonké B (2022) Flora of Cameroon - Annonaceae Vol 45. PhytoKeys 207:1-532
Cubry P, Oddou-Muratorio S, Scotti I, Lefèvre F (2022) Interactions between microenvironment, selection and genetic architecture drive multiscale adaptation in a simulation experiment. Journal of Evolutionary Biology 35(3):451-466
Durant E, Rouard M, Ganko EW, Muller C, Cleary AM, Farmer AD, Conte M, Sabot F (2022) Ten simple rules for developing visualization tools in genomics. PLoS Computational Biology 18:e1010622
Erkens RHJ, Blanpain LMP, Carrascosa Jara I, RungeK, Verspagen N, Cosiaux A, Couvreur TLP (2022) Spatial distribution of Annonaceae across biomes and anthromes: Knowledge gaps in spatial and ecological data. Plants People Planet 5:520-535
Escobar S, Helmstetter AJ, Montúfar R, Couvreur TLP, Balslev H (2022) Phylogenomic relationships and historical biogeography in the South American vegetable ivory palms (Phytelepheae). Molecular Phylogenetics and Evolution 166:107314
Escobar S, Vigouroux Y, Karubian J, Zekraoui L, Balslev H, Montúfar R (2022) Limited seed dispersal shapes fine-scale spatial genetic structure in a Neotropical dioecious large-seeded palm. Biotropica 55:160-172
Faye A, Barnaud A, Kane NA, Cubry P, Mariac C, Burgarella C, Rhoné B, Faye A, Olodo KF, Cisse A, Couderc M, Dequincey A, Zekraouï L, Moussa D, Tidjani M, Vigouroux Y, Berthouly-Salazar C (2022) Genomic footprints of selection in early-and late-flowering pearl millet landraces. Frontiers in Plant Science 13:880631
Flowers JM, Hazzouri KM, Lemansour A, Capote T, Gros-Balthazard M, Ferrand S, Lebrun M, Amiri KMA, Purugganan MD (2022) Patterns of volatile diversity yield insights into the genetics and biochemistry of the date palm fruit volatilome. Frontiers in Plant Science 13:85365
de la Fuente Cantó C, Diouf MN, Ndour PMS, Debieu M, Grondin A, Passot S, Champion A, Barrachina C, Pratlong M, Gantet P, Assigbetsé K, Kane N, Cubry P, Diedhiou AG, Heulin T, Achouak W, Vigouroux Y, Cournac L, Laplaze L (2022) Genetic control of rhizosheath formation in pearl millet. Scientific Reports 12:9205
de la Fuente Cantó C, Vigouroux Y (2022) Evaluation of nine statistics to identify QTLs in bulk segregant analysis using next generation sequencing approaches. BMC Genomics 23:490
Gbemavo C, Toffa T, Tchakpa C, Loko YLE, Djedatin G, Ewedje EE, Orobiyi A, P Sedah, Sabot F (2022) Rice farmers' perceptions and response to climate variability, and determinants of adaptation strategies in the Republic of Benin. International Journal of Climate Change Strategies and Management. In press
Gosline G, Cheek M, Onana JM, Ngansop Tchatchouang E, van der Burgt XM, MacKinnon L, Dagallier LMJ (2022) Uvariopsis dicaprio (Annonaceae) a new tree species with notes on its pollination biology, and the critically endangered narrowly endemic plant species of the Ebo Forest, Cameroon. PeerJ 9:e12614
Gros‐Balthazard M*, Battesti V*, Flowers JM, Ferrand S, Breil M, Ivorra S, Terral J, Purugganan MD, Wing RA, Mohammed N, Bourgeois Y (2022) What lies behind a fruit crop variety name? A case study of the barnī date palm from al‐‘Ulā oasis, Saudi Arabia. Plants, People, Planet:3.10326
Helmstetter AJ, Glemin S, Käfer J, Zenil-Ferguson R, Sauquet H, de Boer H, Dagallier LPMJ, Mazet N, Reboud EL, Couvreur TLP, Condamine FL (2022) Pulled diversification rates, lineages-through-time plots, and modern macroevolutionary modeling. Systematic Biology 71(3):758-773
Hosni H, Diallo A, Morcillo F, Vaissayre V, Collin M, Tranchant-Dubreuil C, Dussert S, Joët T, Castaño F, Marquínez X, Stauffer FW, Hodel DR, Castillo Mont JJ, Adam H, Jouannic S, Tregear JW (2022) Redox-related gene expression and sugar accumulation patterns are altered in the edible inflorescence produced by the cultivated form of pacaya palm (Chamaedorea tepejilote). Annals of Botany 128(2):231-240
Jankowski F, Barnaud A (2022) Community-based Seed Management and Collective Responsibility for Agrobiodiversity. The need for Recognition of Uncommons. Droit et Cultures 84
Loko YLE, Gbemavo CDSJ, Djedatin G, Ewedje EE, Orobiyi A, Toffa J, Tchakpa C, Sedah P, Sabot F (2022) Characterization of rice farming systems, production constraints and determinants of adoption of improved varieties by smallholder farmers of the Republic of Benin. Scientific Reports 12:3959
Mariac C, Duponchelle F, Miranda G, Ramallo C, Wallace R, Tarifa G, Garcia-Davila C, Ortega H, Pinto J, Renno JF (2022) Unveiling biogeographical patterns of the ichthyofauna in the Tuichi basin, a biodiversity hotspot in the Bolivian Amazon, using environmental DNA. PLoS ONE 17(1): e0262357
Mariac C, Renno JF, Garcia-Davila C, Vigouroux Y, Mejia E, Angulo C, Castro Ruiz D, Estivals G, Nolorbe C, García Vasquez A, Nuñez J, Cochonneau G, Flores M, Alvarado J, Vertiz J, Chota-Macuyama W, Sánchez H, Miranda G, Duponchelle F (2022) Species-level ichthyoplankton dynamics for 97 fishes in two major river basins of the Amazon using quantitative metabarcoding. Molecular Ecology 31(6):1627-1648
Mboujda FMM, Avana-Tientcheu ML, Momo ST, Ntongme AM, Vaissayre V, Azandi LN, Dussert S, Womeni H, Onana J-M, Sonké B, Ta,kou C, Duminil J (2022) Domestication Syndrome in Dacryodes edulis (Burseraceae): Comparison of Morphological and Biochemical Traits between Wild and Cultivated Populations. Plants 11:2496
Meguem Mboujda MF, Avana-Tientcheu ML, Momo Takoudjou S, Mboukap Ntongme A, Vaissayre V, Azandi Ngnintedem L, Dussert S, Womeni H, Onana JM, Sonké BS, Tankou C, Duminil J (2022) Domestication syndrome in Dacryodes edulis (Burseraceae): comparison of morphological and biochemical traits between wild and cultivated populations. Plants 11:2496 10.3390/plants11192496
Nguyen HT, Mantelin S, Ha CV, Lorieux M, Jones JT, Mai CD, Bellafiore S (2022) Insights into the genetics of the Zhonghua 11 resistance to Meloidogyne graminicola and Its molecular determinism in rice. Frontiers in Plant Science, 13:854961
Mofini MT, Diedhiou AG, Simonin M, Dondjou DT, Pignoly S, Ndiaye C, Min DH, Vigouroux Y, Laplaze L, Kane A (2022) Cultivated and wild pearl millet display contrasting patterns of abundance and co-occurrence in their root mycobiome. Scientific Reports 12:207
Pitman CA, White DM, Andino JEG, Couvreur TLP, Fortier RP, Zapata JN, Cornejo X, Clark JL, Feeley KJ, Johnston MK, Lozinguez A, Rivas-Torres G (2022) Rediscovery of Gasteranthus extinctus L.E.Skog & L.P.Kvist (Gesneriaceae) at multiple sites in western Ecuador. PhyoKeys 194:33-46
Tournebize R, Borner L, Manel S, Meynard CN, Vigouroux Y, Crouzillat D, Fournier C, Kassam M, Descombes P, Tranchant-Dubreuil C, Parrinello H, Kiwuka C, Sumirat U, Legnate H, Kambale JL, Sonké B, Cassule Mahinga J, Musoli P, Janssens SB, Stoffelen P, de Kochko A, Poncet V (2022) Ecological and genomic vulnerability to climate change across native populations of Robusta coffee (Coffea canephora). Global Change Biology In press
Oliveira de Aquino S, Kiwuka C, Tournebize R, Gain C, Marraccini P, Mariac C, Bethune K, Couderc M, Cubry P, Andrade AC, Lepelley M, Darracq O, Crouzillat D, Anten N, Musoli P, Vigouroux Y, de Kochko A, Manel S, François O, Poncet V (2022) Adaptive potential of Coffea canephora from Uganda in response to climate change. Molecular Ecology 31(6):1800-1819
2021
Adji BI, Akaffou DS, Kouassi KH, Houphouet YP, de Reffye P, Duminil J, Jaeger M, Sabatier S(2021) Allometric models for non-destructive estimation of dry biomass and leaf area in Khaya senegalensis (Desr.) A. Juss., 1830 (Meliaceae), Pterocarpus erinaceus Poir., 1804 (Fabaceae) and Parkia biglobosa, Jack, R. Br., 1830 (Fabaceae). Trees 35:1905-1920
Affortit P, Effa-Effa B, Ndoye MS, Moukouanga D, Luchaire N, Cabrera-Bosquet L, Perálvarez M, Pilloni R, Welcker C, Champion A, Gantet P, Diedhiou AG, Manneh B, Aroca R, Vadez V, Laplaze L, Cubry P, Grondin A (2021) High-throughput phenotyping reveals a link between transpiration efficiency and transpiration restriction under high evaporative demand and new loci controlling water use-related traits in African rice, Oryza glaberrima Steud. BioRxiv
Akaffou SD, Kouame AK, Gore NBB, Abessika GY, Kouassi HK, Hamon P, Sabatier S, Duminil J (2021) Effect of the seeds provenance and treatment on the germination rate and plants growth of four forest trees species of Côte d'Ivoire. Journal of Forestry Research 32:161-169
Barro M, Konate KA, Wonni I, Kassankogno AI, Sabot F, Albar L, Somda I, Béna G, Ghesquière A, Kam H, Sié M, Cubry P, Tollenaere C (2021) Assessment of genetic diversity of rice in registered cultivars and farmers’ fields in Burkina Faso. Crops 1:129-140
Belton S, Cubry P, Fox E, Kelleher CT (2021) Novel Post-Glacial Haplotype Evolution in Birch—A Case for Conserving Local Adaptation. Forests 12:1246
Cantó CD la F, Diouf MN, Ndour PMS, Debieu M, Grondin A, Passot S, Champion A, Barrachina C, Pratlong M, Gantet P, Assigbetsé K, Kane N, Cubry P, Diedhiou AG, Heulin T, Achouak W, Vigouroux Y, Cournac L, Laplaze L (2021) Genetic control of rhizosheath formation in pearl millet. BioRxiv
Couvreur TL, Dauby G, Blach-Overgaard A, Deblauwe V, Dessein S, Droissart V, Hardy OJ, Harris DJ, Janssens SB, Ley AC, Mackinder BA, Sonké B, Sosef MS, Stévart T, Svenning JC, Wieringa JJ, Faye A, Missoup AD, Tolley KA, Nicolas V, Ntie S, Fluteau F, Robin C, Guillocheau F, Barboni D, Sepulchre P (2021) Tectonics, climate and the diversification of the tropical African terrestrial flora and fauna. Biological Review 96:16-51
Dagallier LP, Mbago FM, Luke WRQ, Couvreur TLP (2021) Three new species of Uvariodendron (Annonaceae) from coastal East Africa in Kenya and Tanzania. PhytoKeys 174: 107-126
Duminil J, Besnard G (2021) Utility of the mitochondrial genome in plant taxonomic studies. In Molecular Plant Taxonomy - Methods and Protocols, Besse P (Ed.), Humana, New York. pp107-118
Duponchelle F, Isaac VJ, Rodrigues Da Costa Doria C, Van Damme PA, Herrera-R GA, Anderson EP, Cruz REA, Hauser M, Hermann TW, Agudelo E, Bonilla-Castillo C, Barthem R, Freitas CEC, García-Dávila C, García-Vasquez A, Renno JF, Castello L (2021) Conservation of migratory fishes in the Amazon basin. Aquatic Conservation: Marine and Freshwater Ecosystems 31:1087-1105
Durant E, Sabot F, Conte M, Rouard M (2021) Panache: a web browser-based viewer for linearized pangenomes. Bioinformatics 37(23):4556-4558
Escobar S, Helmstetter AJ, Jarvie S, Montúfar R, Balslev H, Couvreur TLP (2021) Pleistocene climatic fluctuations promoted alternative evolutionary histories in Phytelephas aequatorialis, an endemic palm from western Ecuador. Journal of Biogeography 48:1023-1037
Gros-Balthazard M, Flowers JM (2021) A brief history of the origin of domesticated date palms. In Al-Khayri JM, Jain SM & Johnson DV (Eds.) The date palm genome, Vol. 1: Phylogeny, biodiversity and mapping (pp. 55-74). Springer International Publishing
Gros-Balthazard M, Flowers JM, Hazzouri KM, Ferrand S, Aberlenc F, Sallon S, Purugganan MD (2021) The genomes of ancient date palms germinated from 2,000 y old seeds. Proceedings of the National Academy of Sciences 118(19):e2025337118
Gros-Balthazard M, Baker WJ, Leitch IJ, Pellicer J, Powell RF, Bellot S (2021) Systematics and evolution of the penus Phoenix: Towards understanding date palm origins. In Al-Khayri JM, Jain SM & Johnson DV (Eds.) The date palm genome, Vol. 1: Phylogeny, biodiversity and mapping (pp. 29-54). Springer International Publishing
Guignon V, Breton C, Mariette J, Sabot F, Fumey J, Lefort V, et al. (2021) Ten simple rules for switching from face-to-face to remote conference: An opportunity to estimate the reduction in GHG emissions. PLoS Computational Biology 17(10): e1009321
Helmstetter AJ, Béthune K, Kamdem NG, Sonké B, Couvreur TLP (2021) Individualistic evolutionary responses of Central African rain forest plants to Pleistocene climatic fluctuations. Proceedings of the National Academy of Sciences 117(51):32509-32518
Jiménez MFT, Prata EMB, Zizka A, Cohn-Haft M, de Oliveira AVG, Emilio T, Chazot N, Couvreur TLP, Kamga SM, Sonké B, Cano Á, Collevatti RG, Kuhnhäuser BG, Baker WJ, Antonelli A, Bacon CD (2021) Phylogenomics of the palm tribe Lepidocaryeae (Calamoideae: Arecaceae) and description of a new species of Mauritiella. Systematic Botany 46(3):863-874
Kalendar R, Sabot F, Rodriguez F, Karlov GI, Natali L, Alix K (2021) Editorial: mobile elements and plant genome evolution, comparative analyzes and computational tools. Frontiers in Plant Science 12:735134
Kiwuka C, Goudsmit E, Tournebize R, Oliveira de AquinoS , Douma JC, Bellanger L, Crouzillat D, Stoffelen P, Sumirat U, Legnaté H, Marraccini P, de Kochko A, Carvalho Andrade A, Wasswa Mulumba J, Musoli P, Anten NPR, Poncet V (2021) Genetic diversity of native and cultivated Ugandan robusta coffee (Coffea Canephora Pierre Ex A. Froehner): Climate influences, breeding potential and diversity conservation. PLOS ONE 16(2): e0245965
Kuhnhäuser BG, Bellot S, Couvreur TLP, Dransfield J, Henderson A, Schley R, Chomicki G, Eiserhardt WL, Hiscock SJ, Baker WJ (2021) A robust phylogenomic framework for the calamoid palms. Molecular Phylogenetics and Evolution 157:107067
Lenters TP, Henderson A, Dracxler CM, Elias GA, Mogue Kamga S, Couvreur TLP, Kissling WD (2021) Integration and harmonization of trait data from plant individuals across heterogeneous sources. Ecological Informatics 62:101206
Loko YLE, Ewedje EE, Orobiyi A, Djedatin G, Toffa J, Gbemavo CDSJ, Tchakpa C, Gavoedo D, Sedah P, Sabot F (2021) On-farm management of rice diversity, varietal preference criteria, and farmers' perceptions of the African (Oryza glaberrima Steud.) versus Asian rice (Oryza sativa L.) in the Republic of Benin (West Africa): Implications for breeding and conservation. Economic Botany 75:1-29
Montúfar R, Recalde A, Couvreur TLP (2021) High genetic diversity with low connectivity among Mauritia flexuosa (Arecaceae) stands from Ecuadorean Amazonia. Biotropica 53:152-161
Morel J, Duminil J, Munzinger J (2021) Bopopia , a new genus of Gesneriaceae from New Caledonia. European Journal of Taxonomy 736: 82-101
Pérez-Escobar OA, Bellot S, Przelomska NAS, Flowers JM, Nesbitt M, Ryan P, Gutaker RM, Gros-Balthazard M, Wells T, Kuhnhäuser BG, Schley R, Bogarín D, Dodsworth S, Diaz R, Lehmann M, Petoe P, Eiserhardt WL, Preick M, Hofreiter M, Hajdas I, Purugganan M, Antonelli A, Gravendeel B, Leitch IJ, Torres Jimenez MF, Papadopulos AST, Chomicki G, Renner SS, Baker WJ (2021) Molecular clocks and archeogenomics of a late period Egyptian date palm leaf reveal introgression from wild relatives and add timestamps on the domestication. Molecular Biology and Evolution, 38(10):4475-4492
Péros JP, Cousins P, Launay A, Cubry P, Walker A, Prado E, Peressotti E, Wiedemann-Merdinoglu S, Laucou V, Merdinoglu D, This P, Boursiquot JM, Doligez A, (2021) Genetic diversity and population structure in Vitis species illustrate phylogeographic patterns in eastern North America. Molecular Ecology 30:2333-2348
Rimlinger A, Avana ML, Awono A, Chakocha A, Gakwavu A, Lemoine T, Marie L, Mboujda F, Vigouroux Y, Johnson V, Vinceti B, Carrière SM, Duminil J (2021). Trees and their seed networks: The social dynamics of urban fruit trees and implications for genetic diversity. PLOS ONE, 16(3), e0243017
Rimlinger A, Duminil J, Lemoine T, Avana ML, Chakocha A, Gakwavu A, Mboujda F, Tsogo M, Elias M, Carrière SM (2021) Shifting perceptions, preferences and practices in the African fruit trade: the case of African plum (Dacryodes edulis) in different cultural and urbanization contexts in Cameroon. Journal of Ethnobiology and Ethnomedicine 17(65)
Strijk JS, Hinsinger DD, Roeder MM, Chatrou LW, Couvreur TL, Erkens RH, Sauquet H, Pirie MD, Thomas DC, Cao K (2021) Chromosome-level reference genome of the soursop (Annona muricata): A new resource for Magnoliid research and tropical pomology. Molecular Ecology Resources 21(5):1608-1619
Toffa J, Loko YLE, Djedatin G, Gbemavo CDSJ, Orobiyi A, Tchakpa C, Ewedje EE, Sabot F (2021) Rice pests in the Republic of Benin: farmers' perceptions, knowledge and management practices. Pest Management Science 77(11):5058-5071
Varshney RK, Roorkiwal M, Sun S, Bajaj P, Chitikineni A, Thudi M, Singh NP, Du X, Upadhyaya HD, Khan AW, Wang Y, Garg V, Fan G, Cowling WA, Crossa J, Gentzbittel L, Voss-Fels KP, Valluri VK, Sinha P, Singh VK, Ben C, Rathore A, Punna R, Singh MK, Tar'an B, Bharadwaj C, Yasin M, Pithia MS, Singh S, Soren KR, Kudapa H, Jarquín D, Cubry P, Hickey LT, Dixit GP, Thuillet A-C, Hamwieh A, Kumar S, Deokar AA, Chaturvedi SK, Francis A, Howard R, Chattopadhyay D, Edwards D, Lyons E, Vigouroux Y, Hayes BJ, von Wettberg E, Datta SK, Yang H, Nguyen HT, Wang J, Siddique KHM, Mohapatra T, Bennetzen JL, Xu X, Liu X (2021) A chickpea genetic variation map based on the sequencing of 3,366 genomes. Nature 599, 622-627
2020
Abrouk M, Ahmed HI, Cubry P, Simonikova D, Cauet S, Pailles Y, Bettgenhaeuser J, Gapa L, Scarcelli N, Couderc M, Zekraoui L, Kathiresan N, Cizkova J, Hribova E, Dolezel J, Arribat S, Bergès H, Wieringa JJ, Gueye M, Kane NA, Leclerc C, Causse S, Vancoppenolle S, Billot C, Wicker T, Vigouroux Y, Barnaud A, Krattinger SG (2020) Fonio millet genome unlocks African orphan crop diversity for agriculture in a changing climate. Nature Communication 11:4488
Adji BI, Akaffou SD, Kouassi KH, Houphouet YP, Duminil J, Sabatier S (2020) Influence of different environments on germination parameters and seedling morphology in Khaya senegalensis (Desr.) A. Juss (Meliaceae). American Journal of Plant Sciences 11(10), 1579-1600
Aubertin C, Pham JL (2020) Le report de la COP15, une opportunité pour repenser le mécanisme d’accès aux ressources génétiques et de partage des avantages. Écologie & politique, 61:163-170
Bellot S, Bayton RP, Couvreur TLP, Dodsworth S, Eiserhardt WL, Guignard MS, Pritchard HW, Roberts L, Toorop PE, Baker WJ (2020) On the origin of giant seeds: the macroevolution of the double coconut (Lodoicea maldivica) and its relatives (Borasseae, Arecaceae). New Phytologist 228: 1134-1148
Brée B, Helmstetter AJ, Bethune K, Ghogue J-P, Sonké B, Couvreur TLP (2020) Diversification of African rainforest restricted clades: Piptostigmateae and Annickieae (Annonaceae). Diversity 12(6):227
Cubry P, Pidon H, Ta KN, Tranchant-Dubreuil C, Thuillet AC, Holzinger M, Adam H, Kam H, Chrestin H, Ghesquière A, François O, Sabot S, Vigouroux Y, Albar L, Jouannic S (2020) Genome wide association study pinpoints key agronomic QTLs in African rice Oryza glaberrima. Rice 13:66
Dagallier LPMJ, Janssens SB, Blach-Overgaard A, Mackinder BA, Droissart V, Svenning JC, Sosef MSC, Stévart T, Harris DJ, Sonké B, Wieringa JJ, Hardy OJ, Couvreur TLP (2020) Cradles and museums of generic plant diversity across tropical Africa. New Phytologist 225:2196-2213
Diack O, Kanfany G, Gueye MC, Sy O, Fofana A, Tall H, Serba DD, Zekraoui L, Berthouly-Salazar C, Vigouroux Y, Diouf D, Kane NA (2020) GWAS unveils features between early- and late-flowering pearl millets. BMC Genomics 21:777
Donkpegan AS, Pineiro R, Heuertz M, Duminil J, Daïnou K, Doucet JL, Hardy OJ (2020) Population genomics of the widespread African savannah trees Afzelia africana and Afzelia quanzensis reveals no significant past fragmentation of their distribution ranges. American Journal of Botany 107:498-509
Escobar-Torrez K, Ledru MP, Ortuño T, Lombardo U, Renno JF (2020) Landscape changes in the southern Amazonian foreland basin during the Holocene inferred from Lake Ginebra, Beni, Bolivia. Quaternary Research 94:46-60
Estivals G, Duponchelle F, Römer U, García-Dávila C, Airola E, Deléglise M, Renno JF (2020) The Amazonian dwarf cichlid Apistogramma agassizii (Steindachner, 1875) is a geographic mosaic of potentially tens of species: Conservation implications. Aquatic Conservation: Marine andFreshwater Ecosystems 30(8):1521-1539
Garcia-Davila C, Aldana Gomero D, Renno JF, Diaz Soria R, Hidalgo Pizango G, Flores Llampazo G, Castro-Ruiz D, Mejia de Loayza E, Angulo Chavez C, Mader M, Tysklind N, Paredes-Villanueva K, del Castillo Torres D, Degen B, Honorio Coronado EN (2020) Molecular evidence for three genetic species of Dipteryx in the Peruvian Amazon. Genetica 148:1111
Grondin A, Affortit P, Tranchant-Dubreuil C, de la Fuente-Canto C, Mariac C, Gantet P, Vadez V, Vigouroux Y, Laplaze L (2020) Aquaporins are main contributors to root hydraulic conductivity in pearl millet [Pennisetum glaucum (L) R. Br.]. PLoSONE 15(10):e0233481
Hauser M, Duponchelle F, Hermann TW, Limburg KE, Castello L, Stewart DJ, Torrente-Vilara G, Garcia-Vasquez A, Garcia-Davila C, Pouilly M, Pecheyran C, Ponzevera E, Renno JF, Moret AS, Doria CRC (2020) Unmasking continental natal homing in goliath catfish from the upper Amazon. Freshwater Biology 65:325-336
Helmstetter AJ, Amoussou BEN, Bethune K, Kamdem NG, Glèlè Kakaï R, Sonké B, Couvreur TLP (2020) Phylogenomic approaches reveal how climate shapes patterns of genetic diversity in an African rain forest tree species. Molecular Ecology 29: 3560-3573
Helmstetter AJ, Kamga SM, Bethune K, Lautenschläger T, Zizka A, Bacon CD, Wieringa JJ, Stauffer F, Antonelli A, Sonké B, Couvreur TLP (2020) Unraveling the phylogenomic relationships of the most diverse African palm genus Raphia (Calamoideae, Arecaceae). Plants 9(4):549
Ibrahim Bio Yerima AR, Achigan-Dako EG, Aissata M, Sekloka E, Billot C, Adje COA, Barnaud A, Bakasso Y (2020) Agromorphological Characterization Revealed Three Phenotypic Groups in a Region-Wide Germplasm of Fonio (Digitaria exilis (Kippist) Stapf) from West Africa. Agronomy 10(11):1653
Jankowski F, Louafi S, Kane NA, Diol M, Camara AD, Pham JL, Berthouly-Salazar C, Barnaud, A (2020) From texts to enacting practices: defining fair and equitable research principles for plant genetic resources in West Africa. Agriculture and Human Values 37:1083-1094
Janssens SB, Couvreur TLP, Mertens A, Dauby G, Dagallier LP, Abeele SV, Vandelook F, Mascarello M, Beeckman H, Sosef M, Droissart V, van der Bank M, Maurin O, Hawthorne W, Marshall C, Réjou-Méchain M, Beina D, Baya F, Merckx V, Verstraete B, Hardy O (2020) A large-scale species level dated angiosperm phylogeny for evolutionary and ecological analyses. Biodiversity Data Journal 8: e39677
Kamga SM, Brokamp G, Cosiaux A, Awono A, Fürniss S, Barfod AS, Muafor FJ, Le Gall P, Sonké B, Couvreur TLP (2020) Use and Cultural Significance of Raphia Palms. Economic Botany 74:207-225
Kpatènon MJ, Salako KV, Santoni S, Zekraoui L, Latreille M, Tollon-Cordet C, Mariac C, Jaligot J, Beulé T, Adéoti K (2020) Transferability, development of simple sequence repeat (SSR) markers and application to the analysis of genetic diversity and population structure of the African fan palm (Borassus aethiopum Mart.) in Benin. BMC Genetics 21:145
Kusuma J, Scarcelli N, Couderc M, Mariac C, Zekraoui L, Duminil J (2020) Microsatellite markers development for Indonesian nutmeg (Myristica fragrans Houtt.) and transferability to other Myristicaceae spp. Molecular Biology Reports 47:4835-4840
Labouisse JP, Cubry P, Austerlitz F, Rivallan R, Nguyen HA (2020) New insights on spatial genetic structure and diversity of Coffea canephora (Rubiaceae) in Upper Guinea based on old herbaria. Plant Ecology and Evolution 153:82-100
Le Corre V, Siol M, Vigouroux Y, Tenaillon MI, Délye C (2020) Adaptive introgression from maize has facilitated the establishment of teosinte as a noxious weed in Europe. PNAS 117(41):25618-25627
Lompo D, Vinceti B, Konrad H, Geburek T, Duminil J (2020) Fine-scale spatial genetic structure, mating and gene flow dispersal patterns in Parkia biglobosa with different levels of habitat fragmentation. American Journal of Botany 107(7): 1-13
Miranda-Chumacero G, Mariac C, Duponchelle F, Painter L, Wallace R, Cochonneau G, Molina-Rodriguez J, Garcia-Davila C, Renno JF (2020) Threatened fish spawning area revealed by specific metabarcoding identification of eggs and larvae in the Beni River, upper Amazon. Global Ecology and Conservation 24:e01309
Munzinger J, Damas K, Molino JF, Pintaud JC, Molem K,Hungito H (2020) Land module of Our Planet Reviewed – Papua New Guinea: Plants collected along an elevational gradient on Mount Wilhelm. In Robillard T, Legendre F, Villemant C Leponce M (eds), Insects of Mount Wilhelm, Papua New Guinea - volume 2. Muséum national d’Histoire naturelle, Paris : 41-142 (Mémoires du Muséum national d’Histoire naturelle 214). ISBN : 978-2-85653-836-4
Muscarella R, [...] Couvreur TLP [...] et al. (2020) The global abundance of tree palms. Global Ecology and Biogeography 29:1495-1514
Rhoné B, Defrance D, Berthouly-Salazar C, Mariac C, Cubry P, Couderc M, Dequincey A, Assoumanne A, Kane NA, Sultan B, Barnaud A, Vigouroux Y (2020) Pearl millet genomic vulnerability to climate change in West Africa highlights the need for regional collaboration. Nature Communication 11:5274
Rimlinger A, Marie L, Avana ML, Bouka GUD, Zekraoui L, Mariac C, Carrière SM, Duminil J (2020) New microsatellite markers for Dacryodes edulis (Burseraceae), an indigenous fruit tree species from Central Africa. Molecular Biology Reports 47:2391-2396
Scarcelli N (2020) Population genomics of organelle genomes in crop plants. In Population genomics: Crop plants, Rajora OP (Ed.), Springer, Cham
Olodo KF, Barnaud A, Kane NA, Mariac C, Faye A, Couderc M, Zekraouï L, Dequincey A, Diouf D, Vigouroux Y, Berthouly-Salazar C (2020) Abandonment of pearl millet cropping and homogenization of its diversity over a 40 year period in Senegal.PLoSONE 15(9):e0239123
Yogom B, Avana-Tientcheu ML, Mboujda MF, Momo ST, Fonkou T, Tsobeng A, Barnaud A, Duminil J (2020) Ethnicity differences in use values and management practices of bitter kola (Garcinia kola Heckel) in Cameroon. Economic Botany 74:429-444
2019
Bethune K, Mariac C, Couderc M, Scarcelli N, Santoni S, Ardisson M, Martin JF, Montúfar R, Klein V, Sabot F, Vigouroux Y, Couvreur TLP (2019) Long‐fragment targeted capture for long‐read sequencing of plastomes. Applications in Plant Sciences 7: e1243
Burgarella C, Barnaud A, Kane NA, Jankowski F, Scarcelli N, Billot C, Vigouroux Y, Berthouly-Salazar C (2019) Adaptive Introgression: An Untapped Evolutionary Mechanism for Crop Adaptation. Frontiers in Plant Science 10:1-17
Couvreur TLP, Helmstetter AJ, Koenen EJM, Bethune K, Brandão RD, Little SA, Sauquet H, Erkens RHJ (2019) Phylogenomics of the Major Tropical Plant Family Annonaceae Using Targeted Enrichment of Nuclear Genes. Frontiers in Plant Science 9:1941
Enquist BJ, Feng X, Boyle B, Maitner B, Newman EA, Jorgensen PM, Roehrdanz PR, Thiers BR, Burger JR, Corlett RT, Couvreur TLP, Dauby G, Donoghue JC, Foden W, Lovett JC, Marquet PA, Merow C, Midgley G, Morueta-Holme N, Neves DN, Oliveira-Filho RT, Kraft NJB, Park DS, Peet RK, Pillet M, Serra-Diaz JM, Sandel B, Schildhauer M, Simova I, Violle C, Wieringa JJ, Wiser SK, Hannah L, Svenning JC, McGill BJ (2019) The commonness of rarity: Global and future distribution of rarity across land plants. Science Advances 5:eaaz0414
Fustier MA, Martinez-Ainsworth NE, Aguirre-Liguori JA, Venon A, Corti H, Rousselet A, Dumas F, Dittberner H, Camarena MG, Grimanelli D, Ovaskainen O, Falque M, Moreau L, de Meaux J, Montes-Hernandez S, Eguiarte LE, Vigouroux Y, Manicacci D, Tenaillon MI (2019) Common gardens in teosintes reveal the establishment of a syndrome of adaptation to altitude. PLoS Genet 15: e1008512
Garine E, Barnaud A, Raimond C (2019) Growing a shared landscape: Plants and humans over generations among the Duupa farmers of northern Cameroon. In Hybrid communities: biosocial approaches to domestication and other trans-species relationships. Stepanoff C, Vigne JD (eds.). Routledge Studies in Anthropology. 165-178
Hardy OJ, Delaide B, Hainaut H, Gillet JF, Gillet P, Kaymak E, Vankerckhove N, Duminil J, Doucet JL (2019) Seed and pollen dispersal distances in two African legume timber trees and their reproductive potential under selective logging. Molecular Ecology 25(12):3119-3134
Gorel AP, Duminil J, Doucet JL, Fayolle A (2019) Ecological niche divergence associated with species and populations differentiation in Erythrophleum (Fabaceae, Caesalpinioideae) Plant Ecology and Evolution 152(1):41-52
Hauser M, Doria CRC, Santos RV, Garcia-Vasquez A, Pouilly M, Pecheyran C, Ponzevera E, Torrente-Vilara G, Berail S, Panfili J, Darnaude A, Renno JF, Garcia-Davila C, Nunez J, Ferraton F, Vargas G, Duponchelle F (2019) Shedding light on the migratory patterns of the Amazonian goliath catfish, Brachyplatystoma platynemum, using otolith 87Sr/86Sr analyses. Aquatic Conservation: Marine and Freshwater Ecosystems 29:397-408
Kamga SM, Sonké B, Couvreur TLP (2019) Raphia vinifera (Arecaceae; Calamoideae): Misidentified for far too long. Biodiversity Data Journal 7:e37757
Lissambou BJ, Couvreur TLP, Atteke C, Stévart T, R Pineiro, Dauby G, Monthe FK, Ikabanga DU, Sonké B, M'batchi B, Hardy OJ (2019) Species delimitation in the genus Greenwayodendron based on morphological and genetic markers reveals new species. Taxon 68:442-454
Loiseau O, Olivares I, Paris M, de La Harpe M, Weigand A, Koubínová D, Rolland J, Bacon CD, Balslev H, Borchsenius F, Cano A, Couvreur TLP, Delnatte C, Fardin F, Gayot M, Mejía F, Mota-Machado T, Perret M, Roncal J, Sanin MJ, Stauffer F, Lexer C, Kessler M, Salamin N (2019) Targeted capture of hundreds of nuclear genes unravels phylogenetic relationships of the diverse neotropical palm tribe Geonomateae. Frontiers in Plant Science 10:864
Magwé-Tindo J, Wieringa JJ, Sonké B, Zapfack L, Vigouroux Y, Couvreur TLP, Scarcelli N (2019) Complete plastome sequences of 14 African yam species (Dioscorea spp.). Mitochondrial DNA part B 4(1): 74-76
Mercer KL, Vigouroux Y, Castaneda-Alvarez NP, de Haan S, Hijmans RJ, Leclerc C, McKey D, Vanek SJ (2019) Crop evolutionary agroecology genetic and functional dimensions of agrobiodiversity and associated knowledge. In: Agrobiodiversity: Integrating knowledge for a sustainable future. Zimmerer KS, de Haan S (Eds.). The MIT press, Cambridge, Massachussetts, USA. pp. 21-62
Merot-L’anthoene V, Tournebize R, Darracq O, Rattina V, Lepelley M, Bellanger L, Tranchant-Dubreuil C, Coulee M, Pegard M, Metairon S, Fournier C, Stoffelen P, Janssens SB, Kiwuka C, Musoli P, Sumirat U, Legnate H, Kambale JL, Ferreira da Costa Neto J, Revel C, De Kochko A, Descombes P, Crouzillat D, Poncet V (2019) Development and evaluation of a genome-wide Coffee 8.5K SNP array and its application for high-density genetic mapping and for investigating the origin of Coffea arabica L. Plant Biotechnology Journal 17:1418-1430
Migliore J, Kaymak E, Mariac C, Couvreur TLP, Lissambou BJ, Piñeiro R, Hardy OJ (2019) Pre-Pleistocene origin of phylogeographical breaks in African rain forest trees: New insights from Greenwayodendron (Annonaceae) phylogenomics. Journal of Biogeography 46(1):212-223
Monthe F, Migliore J, DuminilJ, Bouka G, Demenou B, Doumenge C, Blanc-Jolivet C, Ekué M, Hardy OJ (2019) Phylogenetic relationships in two African Cedreloideae genera (Meliaceae) reveal multiple rain/dry forest transitions. Perspectives in Plant Ecology, Evolution and Systematics 37:1-10
Neji M, Gorel A, Ojeda Alayon D, Duminil J, Kastally C, Steppe K, Fayolle A, Hardy O (2019) Comparative analysis of two sister Erythrophleum species (Leguminosae) reveal contrasting transcriptome-wide responses to early drought stress. Gene 694:50-62
Olodo KF, Gueye MC, Calatayud C, Diop BM, Kane NA, Ngom A, Ntui VO, Barreto MMS, Uyoh EA, Abraham S, Vigouroux Y, Billot c, Barnaud A (2019) EST-SSR development for Digitaria exilis and its relatives D. iburua and D. longiflora from transcriptome sequences. Plant Genetic Resources 17:280-284
Onstein RE, Kissling WD, Chatrou LW, Couvreur TLP, Morlon H, Sauquet H (2019) Which frugivory-related traits facilitated historical long-distance dispersal in the custard apple family (Annonaceae)? Journal of Biogeography 46(8):1874-1888
Poncet V, Birnbaum P, Burtet-Sarramegna V, de Kochko A, Fogliani B, Gâteblé G, Isnard S, Jaffré T, Job D, Munoz F, Munzinger J, Scutt CP, Tournebize R, Trueba S, Pillon Y (2019) Amborella - Bearing witness to the past? Annual Plant Reviews Online 3:1-41
Rimlinger A, Carrière SM, Avana M-L, Nguegang A, Duminil J (2019) The Influence of Farmers’ Strategies on Local Practices, Knowledge, and Varietal Diversity of the Safou Tree (Dacryodes edulis) in Western Cameroon. Economic Botany 73(2):249‑264
Scarcelli N, Cubry P, Akakpo R, Thuillet AC, Obidiegwu J, Baco MN, Otoo E, Sonké B, Dansi A, Djedatin G, Mariac C, Couderc M, Causse S, Alix K, Chaïr H, François O, Vigouroux Y (2019) Yam genomics supports West Africa as a major cradle of crop domestication. Science Advances 5(5):eaaw1947
Stévart T, Dauby G, Lowry PP, Blach-Overgaard A, Droissart V, Harris DJ, Mackinder BA, Schatz GE, Sonké B, Sosef MSM, Svenning JC, Wieringa JJ, Couvreur TLP (2019) A third of the tropical African flora is potentially threatened with extinction. Science Advances 5:eaax9444
Tournebize R, Poncet V, Jakobsson M, Vigouroux, Manel S (2019) McSwan: a joint site frequency spectrum method to detect and date selective sweeps across multiple population genomes. Molecular Ecology Ressource 19(1):283-295
Varshney RK, Thudi M, Roorkiwal M, He W, Upadhyaya HD, Yang W, Bajaj P, Cubry P, Rathore A, Jian J, Doddamani D, Khan AW, Garg V, Chitikineni A, Xu D, Gaur PM, Singh NP, Chaturvedi SK, Nadigatla GVPR, Krishnamurthy L, Dixit GP, Fikre A, Kimurto PK, Sreeman SM, Bharadwaj C, Tripathi S, Wang J, Lee SH, Edwards D, Polavarapu KKB, Penmetsa RV, Crossa J, Nguyen HT, Siddique KHM, Colmer TD, Sutton T, von Wettberg E, Vigouroux Y, Xu X, Liu X (2019) Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits. Nature Genetics 51:857-864
Vignal A, Boitard S, Thébault N, Dayo GK, Yapi-Gnaore V, Karim IYA, Berthouly-Salazar C, Pálinkás-Bodzsár N, Guémené D, Thibaud-Nissen F, Warren WC, Tixier-Boichard M, Rognon X (2019) A guinea fowl genome assembly provides new evidence on evolution following domestication and selection in galliformes. Molecular Ecology Resources 19(4):997-1014
Vigouroux Y, Leclerc C, de Haan S (2019) How does population genetics contribute to an understanding of the evolution of agrobiodiversity? In: Agrobiodiversity: Integrating knowledge for a sustainable future. Zimmerer KS, de Haan S (Eds.). The MIT press, Cambridge, Massachussetts, USA. pp. 63-77
2018
Assoumane A, Blay C, Sanda AA, Mariac C, Pham JL, Bezançon G, Vigouroux Y (2018) Wild crop relative populations hot-spots of diversity are hot-spots of introgression in the case of pearl millet. Genetic Resources and Crop Evolution 65:1187-1194
Burgarella C, Cubry P, Kane NA, Varshney RK, Mariac C, Liu X, Shi C, Thudi M, Couderc M, Xu X , Chitikineni A, Scarcelli N, Barnaud A, Rhoné B, Dupuy C, François O, Berthouly-Salazar C, Vigouroux Y (2018) A western Sahara origin of African agriculture inferred from pearl millet genomes. Nature Ecology and Evolution 2:1377-1380
Cosiaux A, Gardiner LM, Stauffer FW, Bachman SP, Sonké B, Baker WJ, Couvreur, TLP (2018) Low extinction risk for an important plant resource: Conservation assessments of continental African palms (Arecaceae/Palmae). Biological Conservation 221:323-333
Cubry P, Tranchant-Dubreuil C, Thuillet AC, Monat C, Ndjiondjop MN, Labadie MN, Cruaud C, Engelen S, Scarcelli N, Rhoné B, Burgarella C, Dupuy C, Larmande P, Wincker P, François O, Sabot F, Vigouroux Y (2018) The rise and fall of African rice cultivation revealed by analysis of 246 new genomes. Current Biology 28:2274-2282.e6
Debieu M, Sine B, Passot S, Grondin A, Akata E, Gangashetty PI, Vadez V, Gantet P, Foncéka D, Cournac L, Hash CT, Kane N, Vigouroux Y, Laplaze L (2018) Response to early drought stress and identification of QTLs controlling biomass production under drought in pearl millet. PlosOne 13(10):e0201635
Diop BM, Guèye MC, Agbangba C, Emile CN, Deu M, Diack O, Fofana A, Kane NA, Ndir KN, Ndoye I, Ngom A, Leclerc C, Piquet M, Vigouroux Y, Zekraoui L, Billot C, Barnaud A (2018) Fonio (Digitaria exilis (Kippist) Stapf): a socially embedded cereal for food and nutrition security in Senegal. Ethnobiology letters 9(2): 150-165
Droissart V, Dauby G, Hardy OJ, Deblauwe V, Harris DJ, Janssens S, Mackinder BA, Blach-Overgaard A, Sonké B, Sosef MSM, Stévart T, Svenning JC, Wieringa JJ, Couvreur TLP (2018) Beyond trees: Biogeographical regionalization of tropical Africa. J Biogeogr. 45:1153-1167
Garine E, Barnaud A, Raimond C (2018) Growing a shared landscape - Plants and humans over generations among the Duupa farmers of northern Cameroon. In: Hybrid communities - Biosocial approaches to domestication and other trans-species relationships. Stépanoff C, Vigne JD (Eds.). Routledge, London, UK.
Jalonen R, Valette M, Boshier D, Duminil J, Thomas E (2018) Forest and landscape restoration severely constrained by a lack of attention to the quantity and quality of tree seed: Insights from a global survey. Conservation Letters 11:e12424
Kamga SM, Niangadouma R, Stauffer FW, Sonké B, Couvreur TLP (2018) Two new species of Raphia. PhytoKeys 111: 17-30
Lissambou BJ, Hardy OJ, Atteke C, Stevart T, Dauby G, Mbatchi B, Sonke B, Couvreur TLP (2018) Taxonomic revision of the African genus Greenwayodendron (Annonaceae). PhytoKeys 114: 55-93
Magwé-Tindo J, Wieringa JJ, Sonké B, Zapfack L, Vigouroux Y, Couvreur TLP, Scarcelli N (2018) Guinea yam (Dioscorea spp.) wild relatives identified using whole plastome phylogenetic analyses. Taxon 67(5):905-915
Mariac C, Vigouroux Y, Duponchelle F, García-Dávila C, Nunez J, Desmarais E, Renno JF (2018) Metabarcoding by Capture using a Single COI probe (MCSP) to identify and quantify fish species in ichthyoplankton swarms. PlosOne. 12-13(9):e0202976./journal.pone.0202976
Monthe FK, Duminil J, Yakusu EK, Beeckman H, Bourland N, Doucet JL, Sosef MSM, Hardy OJ (2018) The African timber tree Entandrophragma congoense (Pierre ex De Wild.) A.Chev. is morphologically and genetically distinct from Entandrophragma angolense (Welw.) C.DC. Tree Genetics and Genomes 14:66
Ngom A, Gueye MC, Gueye M, Billot C, Calatayud C, Diop BM, Kane NA, Piquet M, Vigouroux Y, Zekraoui L, Mbaye MS, Noba K, Barnaud A(2018) Cross-species amplification of microsatellite loci developed for Digitaria exilis Stapf in related Digitaria species. Journal of Applied Biosciences 129:12982-12995
Olodo KF, Gueye MC, Calatayud C, Diop BM, Kane NA, Ngom A, Ntui VO, Barreto MMS, Uyoh EA, Abraham S, Vigouroux Y, Billot C, Barnaud (2018) EST-SSR development for Digitaria exilis (Poaceae) and its relatives D. iburua and D. longiflora from transcriptome sequences. Plant Genet Res. 1-5
Onstein RE, Baker WJ, Couvreur TLP, Faurby S, Herrera-Alsina L, Svenning JC, Kissling WD (2018) To adapt or go extinct? The fate of megafaunal palm fruits under past global change. Proc. Royal Soc. B 285:20180882
Veranso-Libalah MC, Kadereit G, Stone RD, Couvreur TLP (2018) Multiple shifts to open habitats in Melastomateae (Melastomataceae) congruent with the increase of African Neogene climatic aridity. J. Biogeogr. 45:1420-1431
2017
Akakpo R, Scarcelli N, Chair H, Dansi A, Djedatin G, Thuillet AC, Rhone B, Francois O, Alix K, Vigouroux Y (2017) Molecular basis of African yam domestication: analyses of selection point to root development, starch biosynthesis, and photosynthesis related genes. BMC Genomics 18:782
Ambrósio Moreira P, Mariac C, Zekraoui L, Couderc M, Garcia Luize B, Picanço DR, Clement CR, Vigouroux Y (2017) Human management and hybridization shape treegourd fruits in the Brazilian Amazon Basin. Evolutionary Applications 10(6):577-589
Azani N, [...] Duminil J et al. [The Legume Phylogeny Working Group (LPWG)] (2017) A new subfamily classification of the Leguminosae based on a taxonomically comprehensive phylogeny. Taxon 66(1):44-77
Barnaud A, Vigouroux Y, Diallo MT, Saidou S, Piquet M, Barry MB, Bakasso Y, Zekraoui L, Rivallan R, Kane NA, Billot C (2017) High selfing rate inferred for white fonio [Digitaria exilis (Kippist.) Stapf] reproductive system opens up opportunities for breeding programs. Genet. Res. Crop. Evol 34:1485-1490
Burgarella C, Glémin S (2017) Population genetics and genome evolution of selfing species. eLS. In press
Clément Y, Sarah G, Holtz Y, Homa F, Pointet S, Contreras S, Nabholz B, Sabot F, Sauné L, Ardisson M, Bacilieri R, Besnard G, Berger A, Cardi C, De Bellis F, Fouet O, Jourda C, Khadari B, Lanaud C, Leroy T, Pot D, Sauvage C, Scarcelli N, Tregear J, Vigouroux Y, Yahiaoui N, Ruiz M, Santoni S, Labouisse JP, Pham JL, David J, Glémin S (2017) Evolutionary forces affecting synonymous variations in plant genomes. Plos Genetics 13(5):e1006799
Cosiaux A, Gardiner LM, Ouattara DN, Stauffer FW, Sonké B, Couvreur TLP (2017) An endangered West African rattan palm: Eremospatha dransfieldii. Biodivers Data J 5:e11176
Cubry P, Scotti I, Oddou-Muratorio S, Lefevre F (2017) Generalization of the Q(ST) framework in hierarchically structured populations: Impacts of inbreeding and dominance. Molecular Ecology Resources 17:e76-e83
Cubry P, Vigouroux Y, François O (2017) The Empirical Distribution of Singletons for Geographic Samples of DNA Sequences. Frontiers in Genetics 8:139
Dauby G, Stévart T, Droissart V, Cosiaux A, Deblauwe V, Simo-Droissart M, Sosef MSM, Lowry II PP, Schatz GE, Gereau RE, Couvreur TLP (2017) ConR: An R package to assist large-scale multispecies preliminary conservation assessments using distribution data. Ecol Evol. 7:11292-11303
Diack O, Kane NA , Berthouly-Salazar C, Guèye MC, Diop BM, Fofana A, Sy O, Tall H, Zékraoui L, Piquet M, Couderc M, Vigouroux Y, Diouf D, Barnaud A (2017) New genetic insights into pearl millet diversity as revealed by characterization of early- and late-flowering landraces from Senegal. Front. Plant Sci. 8:818
Donkpegan ASL, Doucet J-L, Duminil J, Daïnou K, Pineiro R, Wieringa J, Champluvier D, Hardy OJ (2017) Evolution in African tropical trees displaying ploidy-habitat association: The genus Afzelia (Leguminosae). Molecular Phylogenetic and Evolution 107:270-281
Eiserhardt WL, Couvreur TLP, Baker WJ (2017) Plant phylogeny as a window on the evolution of hyperdiversity in the tropical rainforest biome. New Phytologist 214(4):1408-1422
Fustier MA, Brandenburg J, Boitard S, Lapeyronnie J, Eguiarte LE, Vigouroux Y, Manicacci D, Tenaillon MI (2017). Signatures of local adaptation in lowland and highland teosintes from whole-genome sequencing of pooled samples. Molecular Ecology 26(10):2738-2756
Ghogue JP, Sonké B, Couvreur TLP (2017) Taxonomic revision of the African genera Brieya and Piptostigma (Annonaceae). Plant Ecology and Evolution 150:173-216
Glato K, Aidam A, Kane NA, Bassirou D, Couderc M, Zekraoui L, Scarcelli N, Barnaud A, Vigouroux Y (2017) Structure of sweet potato (Ipomoea batatas) diversity in West Africa covaries with a climatic gradient. PLoS One 12(5):e0177697
Gros-Balthazard M, Galimberti M, Kousathanas A, Newton C, Ivorra S, Paradis L, Vigouroux Y, Carter R, Tengberg M, Battesti V, Santoni S, Falquet L, Pintaud J-C, Terral J-F, Wegmann D (2017) The discovery of wild date palms in Oman reveals a complex domestication history involving centers in the Middle East and Africa. Current Biology 27:2211-2218.e8
Guo X, Tang CC, Thomas DC, Couvreur TLP, Saunders RMK (2017) A mega-phylogeny of the Annonaceae: taxonomic placement of five enigmatic genera and support for a new tribe, Phoenicantheae. Scientific Reports 7:7323
Jalonen R, Valette M, Boshier D, Duminil J, Thomas E (2017) Forest and landscape restoration severely constrained by a lack of attention to the quantity and quality of tree seed: insights from a global survey. Conservation Letters 11(4):e12424
de Kochko A, Hamon S, Guyot R, Couturon E, Poncet V, Dubreuil Tranchant C, Crouzillat D, Rigoreau M, Hamon P (2017). Omics applications : Coffee. In: Chowdappa P, Karun A, Rajesh MK, Ramesh SV (eds.) Biotechnology of plantation crops. New Delhi: Daya Publishing House, 589-606
Lompo D, Vinceti B, Gaisberger H, Konrad H, Duminil J, Ouedraogo M, Sina S, Geburek T (2017) Genetic conservation in Parkia biglobosa (Fabaceae: Mimosoideae) - what do we know? Silvae Genetica 66:1-8
Luebert F , Couvreur TLP, Gottschling M, Hilger HH, Miller JS, Weigend M (2017) Historical biogeography of Boraginales: West Gondwanan vicariance followed by long-distance dispersal? J. Biogeogr. 44:158-169
Maggia ME, Vigouroux Y, Renno JF, Duponchelle F, Desmarais E , Nunez J, Garcia-Davila C, Carvajal F, Paradis E, Martin JF, Mariac C (2017) DNA metabarcoding of Amazonian ichthyoplankton swarms. PlosOne 12(1):e0170009
Monthe FK, Hardy OJ, Doucet JL, Loo J, Duminil J (2017) Extensive seed and pollen dispersal in the rain forest tree Entandrophragma cylindricum (Meliaceae) inferred from indirect and direct analyses. Molecular Ecology 26:5279-5291
Monthe FS, Duminil J, Tosso F, Migliore J, Hardy OJ (2017) Characterization of microsatellite markers in two exploited African trees, Entandrophragma candollei and E. utile (Meliaceae). Applications in Plant Sciences 5(2):1600130
Moussouni S , Pintaud JC, Vigouroux Y, Bouguedoura N (2017) Diversity of Algerian oases date palm (Phoenix dactylifera L., Arecaceae): Heterozygote excess and cryptic structure suggest farmer management had a major impact on diversity. PLoS ONE 12(4):e0175232
Ndour PMS, Gueye M, Barakat M, Ortet P, Bertrand-Huleux M, Pablo AL, Dezette D, Chapuis Lardy L, Assigbetse K, Kane N, Vigouroux Y, Achouak W, Ndoye I, Heulin T, Cournac L (2017) Pearl millet genetic traits impact rhizobacterial diversity and rhizosphere soil aggregation. Front Plant Sci 8:1288
Onstein RE, Baker WJ, Couvreur TLP, Faubry S, Svenning JC, Kissling D (2017) Frugivory-related traits promote speciation of tropical palms. Nature Ecology and Evolution 1:1903-1911
Ousseini IS, Bakasso Y, Kane NA, Couderc M, Zekraoui L, Mariac C, Manicacci D, Rhoné B, Barnaud A, Berthouly-Salazar C, Assoumane A, Moussa D, Moussa T, Vigouroux Y (2017) Myosin XI is associated with fitness and adaptation to aridity in wild pearl millet. Heredity 119:88-94
Rhoné B, Mariac C, Couderc M, Berthouly-Salazar C, Ousseini IS, Vigouroux Y (2017) No excess of cis-regulatory variation associated with intra-specific selection in wild pearl millet (Cenchrus americanus). Genome Biology Evolution 9(2):388-397
Sanin MJ, Zapata P, Pintaud JC, Galeano G, Bohórquez A, Tohme J, Hansen MM (2017) Up and down the blind alley: population divergence with scant gene flow in an endangered tropical lineage of Andean palms (Ceroxylon quindiuense clade: Ceroxyloideae). J Hered 108(3):288-298
Scarcelli N, Chaïr H, Causse S, Vesta R, Couvreur T, Vigouroux Y (2017) Crop wild relative conservation: wild yams are not that wild. Biological Conservation 210:325-333
Sosef MSM, Dauby G, Blach-Overgaard A, van der Burgt X, Catarino L, Damen T, Deblauwe V, Dessein S, Dransfield J, Droissart V, Duarte MC, Engledow H, Fadeur G, Figueira R, Gereau RE, Hardy OJ, Harris DJ, de Heij J, Janssens S, Klomberg Y, Ley AC, Mackinder BA, Meerts P, van de Poel JL, Sonké B, Stévart T, Stoffelen P, Svenning JC, Sepulchre P, Zaiss R, Wieringa JJ, Couvreur TLP (2017) Exploring the floristic diversity of tropical Africa. BMC Biology 15:15
Stull GW, Johnson DM, Murray NA, Couvreur TLP, Reeger J, Roy CM (2017) Plastid and Seed Morphology Data Support a Revised Infrageneric Classification and an African Origin of the Pantropical Genus Xylopia (Annonaceae). American Society of Plant Taxonomists 42:211-225
Tournebize R, Manel S, Vigouroux Y, Munoz F, de Kochko A, Poncet V (2017) Two disjunct Pleistocene populations and anisotropic postglacial expansion shaped the current genetic structure of the relict plant Amborella trichopoda. PLoS One, 12, e0183412
Varshney R, Shi C, Thudi M, Mariac C, Wallace J, Qi P, Zhang H, Zhao Y, Wang X, Rathore A, Srivastava R, Chitikineni A, Fan G, Bajaj P, Punnuri S, Gupta S, Wang H, Jiang Y, Couderc M, Katta M, Paudel D, Mungra K, Chen W, Harris-Shultz K, Garg MV, Desai N, Doddamani D, Kane N, Conner J, Ghatak A, Chaturvedi P, Subramaniam S, Yadav O, Berthouly-Salazar C, Falalou H, Wang J, Liang X, Clotault J, Upadhyaya H, Cubry P, Rhoné B, Gueye M, Sunkar R, Dupuy C, Sparvoli F, Cheng S, Mahala R, Singh B, Yadav R, Lyons E, Datta S, Hash C, Devos K, Buckler E, Bennetzen J, Paterson A, Ozias-Akins P, Grando S, Wang J, Mohapatra T, Weckwerth W, Reif J, Liu X, Vigouroux Y, Xu X (2017) Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology 35:969-984
Veranso-Libalah MC, Stone RD, Fongod AGN, Couvreur TLP, Kadereit G (2017) Phylogeny and systematics of African Melastomateae (Melastomataceae). Taxon 66:584-614
Vigouroux Y, Darmency H (2017) Assessing fitness parameters of hybrids between weed beets and transgenic sugar beets. Plant breeding 136:969-976
2016
Addisalem AB, Duminil J, Wouters D, Bongers F, Smulders MJM (2016) Fine-scale spatial genetic structure in the frankincense tree Boswellia papyrifera (Del.) Hochst. and implications for conservation. Tree Genetics & Genomes 12:86
Ambrósio Moreira P, Mariac C, Scarcelli N, Couderc M, Picanço Rodrigues D, Clement CR, Vigouroux Y (2016) Chloroplast sequence of treegourd (Crescentia cujete, Bignoniaceae) to study phylogeography and domestication. Application in Plant Science. 4(10):1600048
Becerra W, [...] Pintaud JC, [...] (2016) Morichales, cananguchales y otros palmares inundables de Suramérica. Parte II: Colombia, Venezuela, Brasil, Perú, Bolivia, Paraguay, Uruguay y Argentina. Instituto de Investigación de Recursos Biológicos Alexander von Humboldt, 573p
Berthouly-Salazar C, Mariac C, Couderc M, Ousseini IS, Santoni S, Tenaillon M, Vigouroux Y (2016) Strategies for detecting climate adaptations in wild pearl millet for future breeding use. In: Enhancing crop genepool use - Capturing wild relative and landrace diversity for crop improvement. Maxted N, Dulloo ME, Ford-Lloyd BV (eds.). Cabi, UK
Berthouly-Salazar C, Mariac C, Couderc M, Pouzadoux J, Floc'h JB, Vigouroux Y (2016) Genotyping-by-sequencing SNP identification for crops without a reference genome: using transcriptome based mapping as an alternative strategy. Frontiers in Plant Science 7:777
Berthouly-Salazar C, Thuillet A-C, Rhoné B, Mariac C, Salia Ousseini I, Couderc M , Tenaillon M, Vigouroux Y (2016) Genome scan reveals selection acting on genes linked to stress response in wild pearl millet. Molecular Ecology 25(21):5500-5512
Bourobou Bourobou PH, Niangadouma R, Issembe Y, Couvreur TLP (2016)Two new records of palm species for Gabon: Sclerosperma profizianum Valk. & Sunder. and Eremospatha quiquecostulata Becc.. Biodivers Data J 4:e10187
Burgarella C, Chantret N, Gay L, Prosperi JM, Bonhomme M, Tiffin P, Young ND, Ronfort J (2016) Adaptation to climate through flowering phenology: a case study in Medicago truncatula. Molecular Ecology 25(14): 3397-3415
del Castillo AMR, Garcia-Davila C, Mejia K, Pintaud JC (2016) Attalea: Insights into the diversity and phylogeny of an intriguing genus. Palms 60(3):109-124
Cherif E, Zehdi-Azouzi S, Crabos A, Castillo K, Chabrillange N, Pintaud JC, Salhi-Hannachi A, Glémin S, Aberlenc-Bertossi F (2016) Evolution of sex chromosomes prior to speciation in the dioecious Phoenix species. Journal of Evolutionary Biology 29(8):1513-1522
Couvreur TLP, Niangadouma R (2016) New species of Uvariopsis (Annonaceae) and Laccosperma (Arecaceae/Palmae) from Monts de Cristal, Gabon. PhytoKeys 68:1-8
Dauby G, Zaiss R, Blach-Overgaard A, Catarino L, Damen T, Deblauwe V, Dessein S, Dransfield J, Droissart V, Duarte MC, Engledow H, Fadeur G, Figueira R, Gereau RE, Hardy OJ, Harris DJ, de Heij J, Janssens S, Klomberg Y, Ley AC, Mackinder BA, Meerts P, van de Poel JL, Sonké B, Sosef MSM, Stévart T, Stoffelen P, Svenning JC, Sepulchre P, van der Burgt X, Wieringa JJ, Couvreur TLP (2016) RAINBIO: a mega-database of tropical African vascular plants distributions. PhytoKeys 74:1-18
Deblauwe V, Droissart V, Bose R, Sonke B, Blach-Overgaard A, Svenning JC, Wieringa JJ, Ramesh BR, Stevart T, Couvreur TLP (2016) Remotely sensed temperature and precipitation data improve species distribution modelling in the tropics. Global Ecology and Biogeography 25(4):443-454
Dubuisson JY, Hennequin S, Droissart V, Deblauwe V (2016) Hymenophyllum senterreanum Dubuisson & Deblauwe, sp. nov. (Hymenophyllaceae) and its relatives in western Central Africa. Phytotaxa 257(3):287-294
Duminil J, Mendene Abessolo DT, Ndiade Bourobou D, Doucet J-L, Loo J, Hardy OJ (2016) High selfing rate, limited pollen dispersal and inbreeding depression in the emblematic African rain forest tree Baillonella toxisperma - management implications. Forest Ecology & Management 379:20-29
Faye A, Deblauwe V, Mariac C, Richard D, Sonké B, Vigouroux Y, Couvreur TLP (2016) Phylogeography of the genus Podococcus (Palmae/Arecaceae) in Central African rain forests: Climate stability predicts unique genetic diversity. Molecular Phylogenetics and Evolution 105:126-138
Faye A, Pintaud JC, Baker WJ, Vigouroux Y, Sonke B, Couvreur TLP (2016) Phylogeny and diversification history of African rattans (Camamoideae, Ancistrophyllinae). Botanical Journal of the Linnean Society 182(2):256-271
Freitas C, Meerow AW, Pintaud JC, Henderson A, Noblick L, Costa FRC, Barbosa CE, Barrington D (2016) Phylogenetic analysis of Attalea (Arecaceae): insights into the historical biogeography of a recently diversified Neotropical plant group. Botanical Journal of the Linnean Society 182(2):287-302
Gomez C, Despinoy M, Hamon S, Hamon P, Salmon D, Akaffou DS, Legnate H, de Kochko A, Mangeas M, Poncet V (2016) Shift in precipitation regime promotes interspecific hybridization of introduced Coffea species. Ecology and Evolution 6:3240-3255
Goulamoussène Y, Bedeau C, Descroix L, Deblauwe V, Linguet L, Hérault B (2016) Weak Environmental Controls of Tropical Forest Canopy Height in the Guiana Shield. Remote sensing 8(9):747
Gros-Balthazard M, Newton C, Ivorra S, Pierre MH, Pintaud JC, Terral JF (2016) The Domestication Syndrome in Phoenix dactylifera Seeds: Toward the Identification of Wild Date Palm Populations. PLOS ONE 11(3):e0152394
Luebert F, Couvreur TLP, Gottschling M, Hilger H, Miller JS, Weigend M (2016) Historical biogeography of Boraginales: West Gondwanan vicariance followed by long-distance dispersal?. Journal of Biogeography 44(1):158-169
Mariac C, Ousseini IS, Alio AK, Judgé H, Pham JL, Bezançon G, Ronfort J, Descroix L, Vigouroux Y (2016) Spatial and temporal variation in selection of genes associated with pearl millet varietal quantitative traits in situ. Frontiers in Genetics 7:130
Marshall AR, Couvreur TLP, Summers AM, Deere NJ, Luke WRQ, Ndangalasi HJ, Sparrow S, Johnson DM (2016) A new species in the tree genus Polyceratocarpus (Annonaceae) from the Udzungwa Mountains of Tanzania. PhytoKeys 63:63-76
Moraes MR, Pintaud JC (2016) Attalea blepharopus Mart. (Arecaceae) from Bolivia revisited since Martius. Candollea 71:27-32
Ndoye F, Diedhiou AG, Gueye M, Fall D, Barnaud A, Sy MO, Noba K, Diouf D, Kane A (2016) Réponse du fonio blanc (Digitaria exilis Stapf) à l'inoculation avec des champignons mycorhiziens à arbuscules en conditions semi-contrôlées. Journal of Applied Biosciences 103
Ngom A, Mbaye MS, Barnaud A, Kane A, Ba N, Gueye M, Camara AA, Ndour YB, Noba K (2016) Révision du genre Digitaria Haller (Poaceae) au Sénégal : proposition d'une clé de détermination pour une meilleure identification des espèces. International Journal of Biological and Chemical Sciences 10(1)
Passot S, Gnacko F, Moukouanga D, Lukas M, Guyomarc'H S, Moreno Ortega B, Atkinson J, Niang M, Bennett M, Gantet P, Wells DM, Guédon Y, Vigouroux Y, Verdeil JL, Muller B, Laplaze L (2016) Characterization of pearl millet root architecture and anatomy reveals three types of lateral roots. Frontiers in Plant Science 7:829
Pham MH, Tran XH, Berthouly-Salazar C, Tixier-Boichard M, Chen CF, Lee YP (2016) Monitoring of genetic diversity in Taiwan conserved chickens assessed by pedigree and molecular data. Livestock Science 184:85-91
Pinel-Galzi A, Dubreuil-Tranchant C, Hébrard E, Mariac C, Ghesquière A, Albar L (2016) Mutations in rice yellow mottle virus polyprotein P2a involved in RYMV2 gene resistance breakdown. Frontiers in Plant Science 7
Pintaud JC, Rodriguez Del Castillo AM, Ferreira EJL, Moraes M R. Mejia K (2016) Towards a revision of Attalea in Western Amazonia. Palms 60(2):57-77
Sanin MJ, Kissling WD, Bacon CD, Borchsenius F, Galeano G, Svenning JC, Olivera J, Ramuirez R, Trénel P, Pintaud JC (2016) The Neogene rise of the tropical Andes facilitated diversification of wax palms (Ceroxylon: Arecaceae) through geographical colonization and climatic niche separation. Botanical Journal of the Linnean Society 182(2):303-317
Sarah G, Homa F, Pointet S, Contreras S, Sabot F, Nabholz B, Santoni S, Sauné L, Ardisson M, Chantret N, Sauvage C, Tregear J, Jourda C, Pot D, Vigouroux Y, Chair H, Scarcelli N, Billot C, Yahiaoui N, Bacilieri R, Khadari B, Boccara M, Barnaud A, Péros JP, Labouisse JP, Pham JL, David J, Glémin S, Ruiz M (2016) A large set of 26 new reference transcriptomes dedicated to comparative population genomics in crops and wild relatives. Molecular Ecology Ressources 17:565-580
Sarrazin F, Pham JL, Reboud X, Lecomte J (2016) Conséquences évolutives des approches par services écosystémiqes. In: Valeurs de la biodiversité et services écosystémiques - Perspectives interdisciplinaires. Riche P, Geijzendorffer, Level H, Maris V (eds.) Edition Quae
Scarcelli N, Mariac C, Couvreur TLP, Faye A, Richard D, Sabot F, Berthouly-Salazar C, Vigouroux Y (2016) Intra-individual polymorphism in chloroplasts from NGS data: where does it come from and how to handle it?. Molecular Eciology Resources 16(2):434-445
Ta KN, Sabot F, Adam H, Vigouroux Y, DeMita S, Ghesquiere A, Vinh DN, Gantet P, Jouannic S (2016) miR2118-triggered phased siRNAs are differentially expressed duringthe panicle development of wild and domesticated African rice species. Rice 9(1):10
Tosso F, Doucet J-L, Kaymak E, Daïnou K, Duminil J, Hardy OJ (2016) Microsatellite development in Guibourtia tessmannii (Harms) J.Leonard and cross-amplification on congeneric species uncover a polyploid complex. Applications in Plant Sciences 4(7):1600029
Zango O, Rey H, Bakasso Y, Lecoustre R, Aberlenc F, Pintaud JC (2016) Local practices and knowledge associated with date palm cultivation in Southeastern Niger. Agricultural Sciences 7(9)
Zehdi-Azouzi S, Cherif E, Guenni K, Ben Abdelkrim A, Bermil A, Rhouma S, Ben Salah M, Santoni S, Pintaud JC, Aberlenc-Bertossi F, Salhi Hannachi A (2016) Endemic insular and coastal Tunisian date palm genetic diversity. Genetica 144(2):181-190
2015
Allie E, Pelissier R, Engel J, Petronelli P, Freycon V, Deblauwe V, Soucemarianadin L, Weigel J, Baraloto C (2015) Pervasive local-scale tree-soil habitat association in a tropical forest community. Plos One 10(11):0141488
Coomes OT, McGuire SJ, Garine E, Caillon S Mckey D, Demeulenaere E, Jarvis D, Aistara G, Barnaud A, Clouvel P, Emperaire L, Louafi S, Martin P, Massol F, Pautasso M, Violon C, Wencélius J (2015) Farmer seed networks make a limited contribution to agriculture? Four common misconceptions. Food Policy 56:41-50
Couvreur TLP (2015) Odd man out: why are there fewer plant species in African rain forests?. Plant Systematics and Evolution 301(5):1299-1313
Couvreur TLP, Kissling WD, Condamine FL, Svenning JC, Rowe NP, Baker WJ (2015) Global diversification of a tropical plant growth form: environmental correlates and historical contingencies in climbing palms. Frontiers in Genetics 5:452
Couvreur TLP, Niangadouma R, Sonke B, Sauquet H (2015) Sirdavidia, an extraordinary new genus of Annonaceae from Gabon. Phytokeys 46:1-19
Dereeper A, Bocs S, Rouard M, Guignon V, Ravel S, Tranchant-Dubreuil C, Poncet V, Garsmeur O, Lashermes P, Droc G (2015) The coffee genome hub: a resource for coffee genomes. Nucleic Acid Research 43:D1028-D1035
Haider MS, Khan IA, Jaskani MJ, Naqvi SA, Hameed M, Azam M, Khan AA, Pintaud JC (2015) Assessment of morphological attributes of date palm accessions of diverse agro-ecological origin. Pakistan Journal of Botany 47(3):1143-1151
Ludeña B, Cueva A, Riofrio L, Naranjo C, Bastidas C, Pintaud JC, Suárez JP (2015) Non-coding chloroplast regions analysis within the Orchidaceae family in Southern Ecuador. Revista Bionatura 1(1):69-73
Massoni J, Couvreur TLP, Sauquet, H (2015) Five major shifts of diversification through the long evolutionary history of Magnoliidae (angiosperms). BMC Evolutionary Biology 15:49
Moumouni KH, Kountche BA, Jean M, Hash CT, Vigouroux Y, Haussmann BIG, Belzile F (2015) Construction of a genetic map for pearl millet, Pennisetum glaucum (L.) R. Br., using a genotyping-by-sequencing (GBS) approach. Molecular Breeding 35(5).
Mueller L, Strickler S, Domingues D, Pereira L, Andrade A, Marraccini P, Ming R, Wai J, Albert V, Giuliano G, Fiore A, Pietrella M, Aprea G, Descombes P, Moine D, Guyot R, Poncet V, Hamon P, Hamon S, Dubreuil Tranchant C, Couturon E, de Kochko A, Lepelley M, Bellanger L, Merot-l'Anthoene V, Vandecasteele C, Rigoreau M, Crouzillat D, Paschoal Rossi A, Sankoff D, Zheng C, Kuhn G, Korlach J, Chin J (2015) Towards a better understanding of the Coffea arabica genome structure. Proceedings of the 25th international conference on coffee science, ASIC, 2015, p.42-45
Naqvi SA, Khan IA, Pintaud JC, Jaskani MJ, Ali A (2015) Morphological characterization of Pakistan date palm (Phoenix dactylifera L.) genotypes. Pakistan Journal of Agricultural Sciences 52(3):645-650
Poncet V, Scutt C, Tournebize R, Villegente M, Cueff G, Rajjou L, Balliau T, Zivy M, Fogliani B, Job C, de Kochko A, Sarramegna-Burtet V, Job D (2015) The Amborella vacuolar processing enzyme family. Frontiers in Plant Science 6:618
Roncal J, Couderc M, Baby P, Kahn F Millan B, Meerow AW, Pintaud JC (2015) Palm diversification in two geologically contrasting regions of western Amazonia. Journal of Biogeography 42(8):1503-1513
Thomas M, Verzelen N, Barbillon P, Coomes OT, Caillon S, McKey D, Elias M, Garine E, Raimond C, Dounias E, Jarvis D, Wencélius J, Leclerc C, Labeyrie V, Cuong PH, Hue NTN, Sthapit B, Bahadur R, Barnaud A, Violon C, Arias Reyes LM, Latournerie Moreno L, de Santis P, Massol F (2015) Chapter Six - A network-based method to detect patterns of local crop biodiversity: validation at the species and infra-species levels. Advances in Ecological Research 53:259-320
Zehdi-Azouzi S, Cherif E, Moussouni S, Gros-Balthazard M, Naqvi SA, Ludena B, Castillo K, Chabrillange N, Bouguedoura N, Bennaceur M, Si-Dehbi F, Abdoulkader S, Daher A, Terral JF, Santoni S, Ballardini M, Mercuri A, Ben Salah M, Kadri K, Othmani A, Littardi C, Salhi-Hannachi A, Pintaud JC, Aberlenc-Bertoss F (2015) Genetic structure of the date palm (Phoenix dactylifera) in the Old World reveals a strong differentiation between eastern and western populations. Annals of Botany 116(5):847-847
2014
Aberlenc-Bertossi F, Castillo K, Tranchant-Dubreuil C, Cherif E, Ballardini M, Abdoulkder S, Gros-Balthazard M, Chabrillange N, Santoni S, Mercuri A, Pintaud JC (2014) In silico mining of microsatellites in coding sequences of the date palm (Arecaceae) genome, characterization, and transferability. Applications in Plant Sciences 2(1):1300058
Bakasso Y, Zaman-Allah M, Mariac C, Billot C, Vigouroux Y, Zongo JD and Saadou M (2014) Genetic diversity and population structure of a roselle (Hibiscus sabdariffa L.) collection in Niger. Plant Genetic Resources: characterization and utilization 12(2):207-214
Barnaud A, Billot C, Cruz JF (2014) Le fonio, un maillon essentiel de la sécurité alimentaire en Afrique de l'Ouest. Agricultures familiales, Les Dossiers d'Agropolis International 19:1628-4240
Castano F, Stauffer F, Marquinez X, Crevecoeur M, Collin M, Pintaud JC, Tregear J (2014) Floral structure and development in the monoecious palm Gaussia attenuata (Arecaceae; Arecoideae). Annals of Botany 114:1483-1495
Couvreur TLP (2014) Revision of the African genus Uvariastrum (Annonaceae). Phytokeys 33:1-40
Domenech B, Asmussen-Lange CB, Baker WJ, Alapetite E, Pintaud JC, Nadot S (2014) A phylogenetic analysis of palm subtribe Archontophoenicinae (Arecaceae) based on 14 DNA regions. Bot J Linn Soc 175: 469-481
Faye A, Pintaud JC, Baker WJ, Sonke B, Couvreur TLP (2014) A plastid phylogeny of the African rattans (Ancistrophyllinae, Arecaceae). Syst Bot 39:1099-1107
Garine E, Barnaud A, Raimond C (2014) Quel pourrait être le territoire des semences des sorghos que cultivent les Duupa du Massif de Poli (Nord du Cameroun) ?. Les Cahiers d'Outre Mer 265:67-92
Idi Saidou S, Bakasso Y, Inoussa MM, Zaman-Allah M, Atta S, Barnaud A, Billot C, Saadou M (2014) Diversité agro-morphologique des accessions de fonio [Digitaria exilis (Kippist.) Stapf.] au Niger. International Journal of Biological and Chemical Sciences 8(4):1710-1729
Labeyrie V, Deu M, Barnaud A, Calatayud C, Buiron M, Wambugu P, Manel S, Glaszmann JC, Leclerc C (2014) Influence of ethnolinguistic diversity on the sorghum genetic patterns in subsistence farming systems in Eastern Kenya. PLOS One 9(3):e92178
Le Roux JJ, Blignaut M, Gildenhuys E, Mavengere N, Berthouly-Salazar C (2014) The molecular ecology of biological invasions: what do we know about non-additive genotypic effects and invasion success? Biological Invasion 16:997-1001
Leclerc C, Thuillet AC (2014) Biodiversité sauvage et cultivée et gestion des ressources naturelles. Agricultures familiales, Les Dossiers d'Agropolis International 19:35
Manel S, Couvreur TLP, Munoz F, Couteron P, Hardy OJ, Sonke B (2014) Characterizing the Phylogenetic Tree Community Structure of a Protected Tropical Rain Forest Area in Cameroon. PLOS One 9(6):e98920
Mariac C, Scarcelli N, Pouzadou J, Barnaud A, Billot C, Faye A, Maillol V, Santoni S, Vigouroux Y, Couvreur TLP (2014) Cost-effective enrichment hybridization capture of chloroplast genomes at deep multiplexing levels for population genetics andphylogeography studies. Mol Ecol Res 14(6):1103-1113
Orjuela J, Sabot F, Cheron S, Vigouroux Y, Adam H, Chrestin H, Sanni K, Lorieux M, Ghesquiere A (2014) An extensive analysis of the African rice genetic diversity through a global genotyping. Theor Appl Genet 127:2211-2223
Ouattara B, Ndir KN, Gueye MC, Diedhiou I, Barnaud A, Fonceka D, Cisse N, Akpo EL, Diouf D (2014) Genetic diversity of Jatropha curcas L. in Senegal compared with exotic accessions based on microsatellite markers. Gen Res Crop Evol 61:1039-1045
Saïdou AA,Clotault J, Couderc M, Mariac C, Devos KM, Thuillet AC, Amoukou IA, Vigouroux Y (2014) Association mapping, patterns of linkage disequilibrium and selection in the vicinity of the PHYTOCHROME C gene in pearl millet. Theo Appl Genet 127(1):19-32
Saïdou AA, Thuillet AC, Couderc M, Mariac C, Vigouroux Y (2014) Association studies including genotype by environment interactions: prospects and limits. BMC Genetics 15(3)
Sow M, Ndjiondjop MN, Sido A, Mariac C Laing M, Bezancon G (2014) Genetic diversity, population structure and differentiation of rice species from Niger and their potential for rice genetic resources conservation and enhancement. Gen Res Crop Evol 61:199-213
Weigend M, Luebert F, Gottschling M, Couvreur TLP Hilger HH, Miller JS (2014) From capsules to nutlets-phylogenetic relationships in the Boraginales. Cladistics 30:508-518
2013
Assoumane A, Zoubeirou AM, Rodier-Goud M, Favreau B, Bezançon G, Verhaegen D (2013) Highlighting the occurrence of tetraploidy in Acacia senegal (L.) Willd. and genetic variation patterns in its natural range revealed by DNA microsatellite markers. Tree Genetics & Genomes 9(1):93-106
Barnaud A, Kalwij J, McGeoch M, van Vuuren BJ (2013) Pattern and pathway of weed invasion: Evidence from the spatial genetic structure of Raphanus raphanistrum. Biological Invasion 15(11):2455-2465
Ballardini M, Mercuri A, Littardi C, Abbas S, Couderc M, Ludeña B, Pintaud J-C (2013) The chloroplast DNA locus psbZ-trnfM as a potential barcoding marker in Phoenix L (Arecaceae). Zookey 365:71-82
Baker WJ, Couvreur TLP (2013) Global biogeography and diversification of palms sheds light on the evolution of tropical lineages. II: Diversification history and origin of regional assemblages. Journal of Biogeography, 40: 286-289
Baker WJ, Couvreur TLP (2013) Global biogeography and diversification of palms sheds light on the evolution of tropical lineages. I. Historical biogeography. Journal of Biogeography, 40: 274-285
Couvreur TLP, Baker WJ (2013) Tropical rain forest evolution: palms as a model group. BMC Biology 11:48
Cherif E, Zehdi S, Castillo K, Chabrillange N, Abdoulkader S, Pintaud J-C, Santoni S, Salhi-Hannachi A, Glémin S, Aberlenc-Bertossi F (2013) Male-specific DNA markers provide genetic evidence of an XY chromosome system and recombination arrest, and allow to trace paternal lineages in date palm. New Phytologist 197:409-415
De Mita S, Thuillet AC, Gay L, Ahmadi N, Manel S, Ronfort J, Vigouroux Y (2013) Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations. Mol Ecol. 22:1383-1399
Eiserhardt WL, Svenning J-C, Baker WJ, Couvreur TLP, Balslev H (2013) Dispersal and niche evolution jointly shape the geographic turnover of phylogenetic clades across continents. Scientific Reports 3: 1164
Karsten M, van Vuuren BJ, Barnaud A, Terblanche JS (2013) Population genetics of Ceratitis capitata in South Africa : implications for dispersal and pest management. Plos One, 2013, 8 (1), p. e54281
Kountche BA, Hash CT, Dodo H, Laoualy O, Sanogo MD, Timbeli A, Vigouroux Y, This D, Nijkamp R, Haussmann BIG (2013) Development of a pearl millet Striga-resistant genepool: Response to five cycles of recurrent selection under Striga-infested field conditions in West Africa. Field Crop Res 154:82-90
Newton C, Gros-Balthazard M, Ivorra S, Paradis L, Pintaud J-C, Terral J-F (2013) Phoenix dactylifera and P. sylvestris in northwestern India: a glimpse of their complex relationships. PALMS 57: 37-50
Pautasso M, Aistara G, Barnaud A, Caillon S, Clouvel P, Coomes OT, Delêtre M, Demeulenaere E, De Santis P, Döring T, Eloy L, Emperaire L, Garine E, Goldringer I, Jarvis D, Joly HI, Leclerc C, Louafi S, Martin P, Massol F, McGuire S, McKey D, Padoch C, Soler C, Thomas M, Tramontini S (2013) Seed exchange networks for agrobiodiversity conservation: A review. Agron Sustain Dev 33:151-175
Pintaud J-C, Ludeña B, Aberlenc-Bertossi F, Zehdi S, Gros-Balthazard M, Ivorra S, Terral J-F, Newton C, Tengberg M, Abdoulkader S, Daher A, Nabil M, Saro-Hernandez I, Gonzalez-Perez MA, Sosa P, Santoni S, Moussouni S, Si-Dehbi F, Bouguedoura N (2013) Biogeography of the date palm (Phoenix dactylifera L., Arecaceae): insights on the origin and on the structure of modern diversity. Acta Horticulturae 994:19-38
Roncal J, Kahn F, Millán B, Couvreur T, Pintaud J-C (2013) Cenozoic colonization and diversification patterns of tropical American palms: evidence from Astrocaryum (Arecaceae). Botanical Journal of the Linnean Society 171:120-139
Sanín MJ, Anthelme F, Pintaud J-C, Galeano G, Bernal R (2013) Juvenile resilience and adult longevity explain residual populations of the Andean wax palm Ceroxylon quindiuense after deforestation. PLOS ONE
Scarcelli N, Couderc M, Baco MN, Egah J, Vigouroux Y (2013) Clonal diversity and estimation of relative clone age: application to the study of agrobiodiversity of yam (Dioscorea rotundata). BMC Plant Biology 13:178
Zango O, Littardi C, Pintaud J-C, Rey H (2013) Comparative study of architecture and geometry of the date palm male and female inflorescences. Acta Horticulturae 994:175-191
2000-2012 (not comprehensive)
Assoumane A, Mayaki AZ, Favreau B, Bezançon G, Saadou M, Verhaegen D (2012) Differentiation between two sub-species of Acacia senegal complex: Acacia senegal (L.) Willd. and Acacia dudgeoni Craib ex Holland using morphological traits and molecular markers. Genetic Resources and Crop Evolution 59(1):39-48
Barnaud A, Vignes H, Risterucci A-M, Noyer J-L, Pham J-L, Blay C, Buiron M, Vigouroux Y, Billot C (2012) Development of nuclear microsatellite loci for the fonio (Digitaria exilis), an understudied West African cereal. Am J Bot Primers Note 99:e105-7
Clotault J, Thuillet AC, Buiron M, De Mita S, Couderc M, Haussmann BIG, Mariac C, Vigouroux Y (2012) Evolutionary history of pearl millet (Pennisetum glaucum [L.] R. Br.) and selection on flowering genes since its domestication. Mol Biol Evol 29:1199-1212
Terral JF, Newton C, Ivorra S, Gros-Balthazard M, Tito de Morais C, Picq S, Tengberg M, Pintaud JC (2012) Insights into the historical biogeography of the date palm (Phoenix dactylifera L.) using geometric morphometry of modern and ancient seeds. Journal of Biogeography 39(5):929-941
Montufar R, Anthelme F, Pintaud JC, Balslev H (2011) Disturbance and Resilience in Tropical American Palm Populations and Communities. Botanical review 77:426-461
Tregear JW, Rival A, Pintaud JC (2011) A family portrait: unravelling the complexities of palms. Annals of Botany 108:1387-1389
Baker WJ, Norup MV, Clarkson JJ, Couvreur TLP, Dowe JL, Lewis CE, Pintaud JC, Savolainen V, Wilmot T, Chase MW (2011) Phylogenetic relationships among arecoid palms (Arecaceae: Arecoideae). Annals of Botany 108:1417-1432
Pintaud JC, Stauffer FW (2011) A revision of the large-flowered group of Basselinia Vieill. sect. Taloua H. E. Moore & Uhl (Arecaceae). Candollea 66:147-154
Castano F, Crevecoeur M, Pintaud JC, Stauffer FW (2011) Floral structure in the neotropical palms Chelyocarpus Dammer, Cryosophila Blume and Itaya H. E. Moore (Arecaceae). Candollea 66:65-79
Ludeña B, Chabrillange N, Aberlenc-Bertossi F, Adam H, Tregear JW, Pintaud J-C (2011) Phylogenetic utility of the nuclear genes AGAMOUS1 and PHYTOCHROME B in palms (Arecaceae): an example within Bactridinae. Annals of Botany 108(8):1433-1444
Scarcelli N, Tostain S, Vigouroux Y, Luong V, Baco MN, Agbangla C, Daïnou O, Pham JL (2011) Genetic structure of farmer-managed varieties in clonally-propagated crops. Genetica 139:1055-1064
Eiserhardt WL, Pintaud J-C, Asmussen-Lange CB, Hahn WJ, Bernal R, Balslev H, Borchsenius F (2011) Phylogeny and divergence times of Bactridinae (Arecaceae, Palmae) based on plastid and nuclear DNA sequences. Taxon 60:485-498
Scarcelli N, Barnaud A, Eiserhardt W, Treier UA, Seveno M, D'anfray A, Vigouroux Y, Pintaud JC (2011) A set of 100 chloroplast DNA primer pairs to study population genetics and phylogeny in Monocotyledons.PLoS ONE 6(5):e19954
Chair H, Duroy PO, Cubry P, Sinsin B, Pham JL (2011) Impact of past climatic and recent anthropogenic factors on wild yam genetic diversity. Molecular Ecology 20:1612-1623
Anthelme F, Abdoulkader A, Viane R (2011) Are ferns in arid environments underestimated? Contribution from the Saharan Mountains. J Arid Env 75:516-523
Anthelme F, Lincango J, Gully C, Duarte N, Montúfar R (2011) How anthropogenic disturbances affect the resilience of a keystone palm tree in the threatened Andean cloud forest? Biological Conservation 144: 1059-1067
Vigouroux Y, Mariac C, De Mita S, Pham JL, Gérard B, Kapran I, Sagnard F, Deu M, Chantereau J, Ali A, Ndjeunga J, Luong V, Thuillet AC, Saïdou AA, Bezançon G (2011) Selection for earlier flowering crop associated with climatic variations in the Sahel. PLoS ONE 6(5):e19563
Vigouroux Y, Barnaud A, Scarcelli N, Thuillet AC (2011) Biodiversity, evolution and adaptation of cultivated crops. CR Biol 334(5-6):450-457
Adam H, Marguerettaz M, Qadri R, Adroher B, Richaud F, Collin C, Thuillet A-C, Vigouroux Y, Laufs P, Tregear JW, Jouannic S (2011) Divergent expression patterns of miR164 and CUP-SHAPED COTYLEDON genes in palms: significance in the evolution of meristem function in angiosperms. Mol Biol Evol 28:1439-1454
Mariac C, Jehin L, Saïdou AA, Thuillet AC, Couderc M, Sire S, Jugdé H, Adam H, Bezançon G, Pham JL, Vigouroux Y (2011) Genetic basis of pearl millet population adaptation along an environmental gradient investigated by a combination of genome scan and association mapping. Mol Ecol 20:81-91
Deu M, Sagnard F, Chantereau J, Calatayud C, Vigouroux Y, Pham JL, Mariac C, Kapran I, Mamadou A, Gérard B, Ndjeunga J, Bezançon G (2010) Spatio-temporal dynamics of genetic diversity in Sorghum bicolor in Niger. Theor Appl Genet 120:1301-1313
Montufar R, Laffargue A, Pintaud J-C, Hamon S, Avallone S, Dussert S (2010) Oenocarpus bataua Mart. (Arecaceae): rediscovering a source of high oleic vegetable oil from Amazonia. Journal of the American Oil Chemists Society 87:167-172
Tang L, Zou XH, Achoundong G, Potgieter C, Second G, Zhang DY, Ge S (2010) Phylogeny and biogeography of the rice tribe (Oryzeae): evidence from combined analysis of 20 chloroplast fragments. Mol Phylogenet Evol 54:266-277
Anthelme F, Michalet R (2009) Grass-to-tree facilitation in an arid grazed environment (Aïr mountains,Sahara). Basic and Applied Ecology 10:437-446
Bezançon G, Pham JL, Deu M, Vigouroux Y, Sagnard F, Mariac C, Kapran I, Manadou A, Gérard B, Ndjeunga J et al. (2009) Changes in the diversity and geographic distribution of cultivated millet (Pennisetum glaucum [L.] R. Br.) and sorghum (Sorghum bicolor (L.) Moench) varieties in Niger between 1976 and 2003. Genetic Resources and Crop Evolution 56:223-236
Bousalem M, Durand O, Scarcelli N, Lebas BSM, Kenyon L, Marchand JL, Lefort F, Seal SE (2009) Dilemmas caused by endogenous pararetroviruses regarding the taxonomy and diagnosis of yam (Dioscorea spp.) badnaviruses: analyses to support safe germplasm movement. Arch Virol 154:297-314
Kover PX, Rowntree JK, Scarcelli N, Savriama Y, Eldridge T, Schaal BA (2009) Pleiotropic effects of environment-specific adaptation in Arabidopsis thaliana. New phytologist 183:816-825
Kover PX, Valdar W, Trakalo J, Scarcelli N, Ehrenreich IM, Purugganan MD, Durrant C, Mott R (2009) A Multiparent Advanced Generation Inter-Cross to fine-map quantitative traits in Arabidopsis thaliana. PLoS Genet 5:e1000551
Saïdou AA, Mariac C, Luong V, Pham JL, Bezançon G, Vigouroux Y (2009) Association studies identify natural variation at PHYC linked to flowering time and morphological variation in pearl millet. Genetics 182:899-910
Scarcelli N, Kover PX (2009) Standing genetic variation in FRIGIDA mediates experimental evolution of flowering time in Arabidopsis. Mol Ecol 18:2039-2049
Alban J, Millan B, Kahn F (2008) Situación actual de la investigación etnobotánica sobre palmeras de Perú. Rev Peru Biol 15, supl 1:133-142
Allinne C, Mariac C, Vigouroux Y, Bezançon G, Couturon E, Moussa D, Tidjani M, Pham JL, Robert T (2008) Role of seed flow on the pattern and dynamics of pearl millet (Pennisetum glaucum [L.] R. Br.) genetic diversity assessed by AFLP markers: a study in south-western Niger. Genetica 133:167-178
Anthelme F, Abdoukader A, Besnard, G (2008) Distribution, shape and clonal growth of the rare endemic tree Olea europaea subsp. laperrinei (Oleaceae) in the Saharan mountains of Niger. Plant Ecology 198:73-87
Anthelme F, Waziri Mato M, Maley J (2008) Elevation and local refuges ensure persistence of mountain specific vegetation in the Nigerien Sahara. Journal of Arid Environments 72:2232-2242
Baco MN, Biaou G, Pham JL, Lescure JP (2008) Facteurs géographiques et sociaux de la diversité des ignames cultivées au Nord Bénin. Cahiers Agricultures 17:172-177
Barry MB, Diagne A, Pham JL, Ahmadi N (2008) Evolution récente de la diversité génétique des riz cultivés (Oryza sativa et O. glaberrima) en Guinée. Cahiers Agricultures 17:122-127
Barry MB, Diagne A, Sogbossi MJ, Pham JL, Diawara S Ahmadi N (2008) Recent changes in varietal diversity of rice in Guinea. Plant Genetic Resources: Characterization and Utilization 7:63-71
Barry MB, Pham JL, Béavogui S, Ghesquièr, A Ahmadi N (2008) Diachronic (1979-2003) analysis of rice genetic diversity in Guinea did not reveal genetic erosion. Genetic Resources and Crop Evolution 55:723-733
Brooker R, Maestre FT, Callaway RM, Lortie C, Kunstler G, Liancourt P, Tielboerger K, Travis JMJ, Anthelme F et al. (2008) Facilitation in plant communities: the past, the present, and the future. Journal of Ecology 96:18-34
Cheban SA, Rejo-Fienena F, Tostain S (2008) Étude ethnobotanique des ignames (Dioscorea sp.) dans la forêt Mikea et le couloir d'Antseva (sud-ouest de Madagascar). Malagasy Nature
Deu M, Sagnard F, Chantereau J, Calatayud C, Herault D, Mariac C, Pham JL, Vigouroux Y, Kapran I, Traore P et al. (2008) Niger-wide assessment of in situ sorghum genetic diversity with microsatellite markers. Theoretical and Applied Genetics 116:903-913
Galeano G, Sanín MJ, Mejía K, Pintaud JC Millán B (2008) Novelties in the genus Ceroxylon (Arecaceae) from Peru, with description of a new species. Rev Peru Biol 15, supl 1:65-72
Kahn F (2008) The genus Astrocaryum. Rev Peru Biol 15, supl 1:31-48
Kahn F Arana C (2008) Las palmeras en el marco de la investigación para el desarrollo en América del Sur. Rev Peru Biol 15, supl 1:5-6
Kahn F Luxereau A (2008) Doum palm habit and leaf collecting practices in Niger. Palms 52:23-29
Montúfar R, Pintaud JC (2008) Taxonomic status of Oenocarpus bataua (Euterpeae, Arecaceae) inferred from plastid sequences. Revista Peruana de Biología, 15, supl 1:73-78
Oumar I, Mariac C, Pham JL, Vigouroux Y (2008) Phylogeny and origin of pearl millet (Pennisetum glaucum [L.] R. Br) as revealed by microsatellite loci. Theoretical and Applied Genetics 117:489-497
Pintaud JC, Baker WJ (2008) A revision of the New Caledonian palm genera. Kew Bulletin 63:61-73
Pintaud JC, Galeano G, Balslev H, Bernal R, Borchsenius F, Ferreira E, Granville J-J, Mejia K, Millan B, Moraes M, Noblick L, Stauffer FW, Kahn F (2008) Las palmeras de América del Sur: diversidad, distribución e historia evolutiva. Rev Peru Biol 15, supl 1:7-29
Pintaud JC, Millan B, Kahn F (2008) The genus Hexopetion. Rev Peru Biol 15, supl 1:49-54
Pintaud JC (2008) An overview of the taxonomy of Attalea (Arecaceae). Revista Peruana de Biología, 15, supl 1:55-63
Pintaud JC, Anthelme F (2008) Ceroxylon echinulatum in an agroforestry system of northern Peru. Palms 52:96-102
Pintaud JC, Ludeña B (2008) Andean palms in Ecuadorean cities. Palms 52:165-173
Pintaud JC, Couvreur TLP, Lara C, Ludena B, Pham JL (2008) Reciprocal introgression between wild and cultivated compartments of the peach palm (Bactris gasipaes, Arecaceae) in Western Ecuador. In Maxted, N., Ford-Lloyd, B., Kell, S., Iriondo, J., Dulloo, E. and Turok, J. (eds.), Crop Wild relative Conservation and Use. CAB International, UK, pp. 296-308
Sagnard F, Barnaud A, Deu M, Barro C, Luce C, Billot C, Rami JF, Bouchet S, Dembele D, Pomies V, Calatayud C, Rivallan R, Joly H, Brocke KV, Toure A, Chantereau J, Bezançon G, Vaksmann M (2008) Multi-scale analysis of sorghum genetic diversity : understanding the evolutionary processes for in situ conservation. Cahiers Agricultures 17:114-121
Second G, Berthaud J (2008) Sélection empirique et amélioration des plantes. In: Aux origines des plantes, tome 2: Des plantes et des hommes, Chap. 10: 260-275. Hallé, F. (dir.); Lieutaghi, P. (dir.) - Fayard, Paris
Second G, Rouhan G (2008) Human-mediated emergence as a weed and invasive radiation in the wild of the CD genome allotetraploid rice species (Oryza, Poaceae) in the Neotropics. Plos ONE 3:e2613
Scarcelli N, Tostain S, Baco MN, Agbangla C, Daïnou O, Vigouroux Y, Pham JL (2008) Does agriculture conflict with in-situ conservation? A case study on the use of wild relatives by yam farmers in Benin. In : Maxted N, Ford-Lloyd BV, Kell SP, Iriondo JM, Dulloo ME et Turok J (eds) Crop Wild Relative Conservation and Use. CAB International, UK, pp331-339
Tostain S, Chair H, Scarcelli N, Noyer JL, Agbangla C, Marchand JL, Pham JL (2008) Diversité, origine et dynamique évolutive des ignames cultivées Dioscorea rotundata Poir. au Bénin. In : Colloque National du BRG, Un dialogue pour la diversité génétique. Paris : BRG, 2005, p. 465-482
Thuillet AC, Roumet P, Bordat A, Tollon C, Poux G, Santoni S, David J (2008) Déperdition ancienne et restauration moderne de la diversité génétique du blé. Les Actes du BRG, 7
Thuillet AC, Tenaillon MI, Anderson LK, Mitchell SE, Kresovich S, Stack SM, Gaut B, Doebley J (2008) A weak effect of background selection on trinucleotide microsatellites in maize. Journal of Heredity 99:45-55
Vargas VH, Pintaud JC (2008) Characterization of a parapatric contact zone between Astrocaryum macrocalyx and Astrocaryum urostachys at the boundary of the Marañón-Pastaza flood plain and the Iquitos arch. Revista Peruana de Biología, 15, supl 1:79-83
Vegas C, Millan B, Pintaud JC, Kahn F (2008) Descripción de la anatomía del fruto en especies peruanas de Astrocaryum (Arecaceae). Rev Peru Biol 15, supl 1:85-96
Vigouroux Y, Glaubitz JC, Matsuoka Y, Goodman MM, Sanchez GJ, Doebley J (2008) Population structure and gene diversity of New World maize races assessed by DNA Microsatellites. American Journal of Botany 95:1240-1253
Zhao Q, Thuillet AC, Uhlmann NK, Weber A, Rafalski JA, Allen SM, Tingey S, Doebley J (2008) The role of regulatory genes during maize domestication: evidence from nucleotide polymorphism and gene expression. Genetics 178:2133-2143
Zhou HF, Zheng XM, Wei RX, Second G, Vaughan D, Ge S (2008) Contrasting population genetic structure and gene flow between Oryza rufipogon and Oryza nivara. Theoretical and Applied Genetics 117 1181-1189
Anthelme F, Michalet R, Saadou M (2007) Positive associations involving the tussock grass Panicum turgidum Forssk in the Air-Tenere Reserve. Journal of Arid Environments 68:348-362
Anthelme F, Villaret JC, Brun JJ (2007) Shrub encroachment in the subalpine Alps gives rise to community convergence on a regional scale. Journal of Vegetation Science 18:355-362
Badstue LB, Bellon MR, Berthaud J, Juárez X, Rosas IM, Solano AM, Ramírez A (2007) Examining the role of collective action in an informal seed system: a case study from the central valleys of Oaxaca, Mexico. Human Ecology 34:249-273
Badstue L, Bellon M, Berthaud J, Ramírez A, Flores D, Juárez X (2007) The dynamics of farmers' maize seed supply practices in the Central Valleys of Oaxaca, Mexico. World development 35:1579-1593
Barry M, Pham JL, Courtois B, Billot C, Ahmadi N (2007) Rice genetic diversity of the two cultivated rice species (O. sativa & O. glaberrima) in Maritime Guinea. Evidence for interspecific recombination. Euphytica 154:127-137
Barry MB, Pham JL, Courtois B, Billot C, Ahmadi N (2007) Rice genetic diversity at the farm and village levels and genetic structure of local varieties reveal need for in situ conservation. Genetic Resources and Crop Evolution 54:1675-1690
Barry M, Pham JL, Noyer J, Courtois B, Billot C, Ahmadi N (2007) Implications for in situ genetic resource conservation from the ecogeographical distribution of rice genetic diversity in Maritime Guinea. Plant Genetic Resources: Characterization and Utilization 5:45-54
Besnard G, Christin PA, Baali-Cherif D, Bouguedoura N, Anthelme F (2007) Spatial genetic structure in the Laperrine's olive (Olea europaea subsp. laperrinei), a long-living tree from the central Saharan mountains. Heredity 99:649-657
Couvreur T, Hahn W, de Granville J, Pham JL, Ludeña B, Pintaud JC (2007) Phylogenetic relationships of the cultivated Neotropical palm Bactris gasipaes (Arecaceae) with its wild relatives inferred from chloroplast and nuclear DNA polymorphisms. Systematic Botany 32:519-530
Darmency H, Vigouroux Y, Gestat de Garambe T, Richard-Molard M, Muchembled C (2007) Transgene escape in sugar beet production fields: data from six years farm scale monitoring. Environmental Biosafety Research 6:197-206
Kahn F (2007) Ciencias empíricas, ética y desarrollo sostenible. Rev Peru Biol 13:151-154
Ledru P, Salatino MLF, Ceccantini G, Salatinono A, Pinheiro F, Pintaud JC (2007) Regional assessment of the impact of climatic change on the distribution of a tropical conifer in the lowlands of South America. Diversity and Distributions 13:761-771
Montufar R, Mariac C, Pham JL, Pintaud JC (2007) Isolation of 23 polymorphic microsatellite loci in the neotropical palm Oenocarpus bataua Martius (Arecaceae). Molecular Ecology Notes 7:75-78
Tostain S, Agbangla C, Scarcelli N, Mariac C, Daïnou O, Berthaud J, Pham JL (2007) Genetic diversity analysis of yam cultivars (Dioscorea rotundata Poir.) in Benin using SSR markers. Plant Genetic Resources: Characterization and Utilization 5: 71-81
Scarcelli N, Cheverud JM, Schaal BA, Kover PX (2007) Antagonistic pleiotropic effects reduce the potential adaptive value of the FRIGIDA locus. PNAS 104:16986-16991
Asmussen CB, Dransfield J, Deickmann V, Barfod, AS, Pintaud JC, Baker WJ (2006) A new subfamily classification of the palm family (Arecaceae): evidence from plastid DNA phylogeny. Botanical Journal of the Linnean Society 151:15-38
Bellon MR, Berthaud J (2006) Traditional Mexican Agricultural Systems and the Potential Impacts of Transgenic Varieties on Maize Diversity. Agriculture and Human Values 23:3-14
Couvreur T, Billotte N, Risterucci AM, Lara C, Vigouroux Y, Ludena B, Pham JL, Pintaud JC (2006) Close genetic proximity between cultivated and wild Bactris gasipaes Kunth revealed by microsatellite markers in Western Ecuador. Genetic Resources and Crop Evolution 53:1361-1373
Haussmann B, Boubacar A, Boureima SS, Vigouroux Y (2006) Multiplication and preliminary characterization of West and Central African pearl millet landraces. International Sorghum and Millets Newsletter. 47:110-112
Henderson SA, Billotte N, Pintaud JC (2006) Genetic isolation of Cape Verde Island Phoenix atlantica (Arecaceae) revealed by microsatellite markers. Conservation Genetics 7:213-223
Mariac C, Luong V, Kapran I, Mamadou A, Sagnard F, Deu M, Chantereau J, Gérard B, Ndjeunga J, Bezancon G, Pham JL, Vigouroux Y (2006) Diversity of wild and cultivated pearl millet accessions (Pennisetum glaucum [L.] R. Br.) in Niger assessed by microsatellite markers. Theoretical and Applied Genetics 114:49-58
Mariac C, Robert T, Alline C, Remigereau MS, Luxereau A, Tidjabi M, Seyni O, Bezancon G, Pham JL, Sarr A (2006) Genetic diversity and gene flow among pearl millet crop/weed complex: a case study. Theoretical and Applied Genetics 113:1003-1014
Montufar R, Pintaud JC (2006) Variation in species composition, abundance, and microhabitat preferences among western Amazonian terra firme palm communities. Botanical Journal of the Linnean Society 151:127-140
Pintaud JC (2006) The impact of forest disturbance on the palms of New Caledonia. Palms 50:123-135
Scarcelli N, Tostain S, Mariac C, Agbangla C, Daïnou O, Berthaud J, Pham JL (2006) Genetic nature of spontaneous yams (Dioscorea sp.) domesticated by farmers in Benin (West Africa). Genetic Resources and Crop Evolution 53:121-130
Scarcelli N, Tostain S, Vigouroux Y, Agbangla C, Daïnou O, Pham JL (2006) Farmers' use of wild relative and sexual reproduction in a vegetatively propagated crop. The case of yam in Benin. Molecular Ecology 15:2421-2431
Tostain S, Scarcelli N, Brottier P, Marchand JL, Pham JL, Noyer JL (2006) Development of DNA microsatellite markers in tropical yam (Dioscorea sp.). Molecular Ecology Notes 6:173-175
Zehdi S, Pintaud JC, Billotte N, Salem A, Sakka H, Rhouma A, Marrakchi M Triffi M (2006) Use of SSR markers to provide an identification key for date-palm varieties (Phoenix dactylifera L.). Plant Genetic Resources Newsletter 145:11-18
Bataillon T, Chantret N, Cenci A, Gautier MF, Joudrier P, Haudry, Muller MH, Poncet C, Prosperi JM, Ronfort J, Roumet P, Santoni S, Thuillet AC, David J (2005) Impacts d'événements démographiques et sélectifs sur la diversité des plantes cultivées : apports de l'analyse du polymorphisme allié à la théorie de la coalescence. Les Actes du BRG 6, 243-257
Bezancon G, Diallo S (2005) Oryza glaberrima. In: Plant Resources of Tropical Africa (PROTA book on cereals and pulses) Databank. Wageningen UR, Netherland
Bellon MR, Berthaud J (2005) Maize diversity, gene flow and transgenes in Mexico. In M CARMEN DE VICENTE (ed); Topical Reviews in Agricultural Biodiversity: Issues on Gene Flow and Germplasm Management. Rome: IPGRI, pp. 45-51
Flint-Garcia SA, Thuillet AC, Yu J, Pressoir G, Romero SM, Mitchell SE, Doebley J, Kresovich S, Goodman MM, Buckler ES (2005) Maize association population: a high-resolution platform for quantitative trait locus dissection. Plant Journal 44:1054-1064
Fukunaga K, Hill J, Vigouroux Y, Matsuoka Y, Sanchez J, Liu KJ, Buckler ES, Doebley J (2005) Genetic diversity and population structure of teosinte. Genetics 169:2241-2254
Ludeña B, Escobar JC, Pintaud JC (2005) Elementos Alu en el análisis filogenético molecular del infraorden Platyrrhini, Primates. Revista Ecuatoriana de Medicina y Ciencias Biológicas 27:47-51
Ouennoughi M, Kahn F (2005) Behind the date palm in New Caledonia. Palms 49(2): 67-72
Pintaud JC (2005) La Garance Voyageuse 69: 21-26
Pintaud JC (2005) Rhopalostylis baueri on Norfolk Island. Palms 49:92-96
Pintaud JC (2005) A journey along the Rio Napo. Palms 49:85-91
Scarcelli N, Daïnou O, Agbangla C, Tostain S, Pham JL (2005) Segregation patterns of isozyme loci and microsatellite markers show the diploidy of African yam Dioscorea rotundata (2n = 40). Theoretical and Applied Genetics 111:226-232
Second G, Glaszmann JC, Panaud O(2005) Unravelling the origins and genetic diversity of cultivated rice. In: France and the CGIAR: delivering scientific results for agricultural development, pp 11-14
Serratos-Hernandez JA, Islas-Gutierrez F, Buendia-Rodriguez E, Berthaud J (2005) Gene flow scenarios withtransgenic maize in Mexico. Environmental Biosafety Research, 3:149-157
Thuillet AC, Bataillon T, Poirier S, Santoni S, David JL (2005) Estimation of long-term effective population sizes through the history of durum wheat using microsatellite data. Genetics 169:1589-1599
Vigouroux Y, Mitchell S, Matsuoka Y, Hamblin M, Kresovich S, Smith S, Jaqueth J, Smith O, Doebley J (2005) An analysis of genetic diversity across the maize genome using microsatellites. Genetics 169:1617-1630
Wang H, Nussbaum-Wagler T, Li B, Zhao Q, Vigouroux Y, Faller M, Bomblies K, Lukens L, Doebley JF (2005) The origin of the naked grains of maize. Nature 436:714-719
Whittier D, Pintaud JC, Braggins J (2005) The gametophyte of Lycopodium deuterodensum: type I or type II. American Fern Journal 95:22-29
Billotte N, Couvreur T, Marseillac N, Brottier P, Perthuis B, Vallejo M, Noyer JL, Jacquemoud-Collet JP, Risterucci AM, Pintaud JC (2004) A new set of microsatellite markers for the peach palm (Bactris gasipaes Kunth); characterization and across-taxa utility within the tribe Cocoeae. Mol Ecol Notes 4:580-582
Billotte N, Marseillac N, Brottier P, Noyer JL, Jacquemoud-Collet JP, Moreau C, Couvreur T, Chevallier MH, Pintaud JC, Risterucci AM (2004) Nuclear microsatellite markers for the date palm (Phoenix dactylifera L.): characterization and utility across the genus Phoenix and in other palm genera. Mol Ecol Notes 4:256-258
Bellon MR, Berthaud J (2004) Transgenic maize and the evolution of landrace diversity in Mexico. The importance of farmers' behavior. Plant Physiol 134:883-888
Pressoir G, Berthaud J (2004) Population structure and strong divergent selection shape phenotypic diversification in maize landraces. Heredity 92:95-101
Pressoir G, Berthaud J (2004) Patterns of population structure in maize landraces from the Central Valleys of Oaxaca in Mexico. Heredity 92:88-94
Serratos-Hernández JA, Islas-Gutiérrez F, Buendía-Rodríguez E, Berthaud J (2004) Gene flow scenarios with transgenic maize in Mexico. Environ Biosafety Res 3:149-157
Thuillet AC, Bataillon T, Sourdille P, David JL (2004) Factors affecting polymorphism at microsatellite loci in bread wheat [ Triticum aestivum (L.) Thell]: effects of mutation processes and physical distance from the centromere. Theor Appl Genet. 108:368-377
Zehdi S, Trifi M, Billotte N, Marrakchi M, Pintaud JC (2004) Genetic diversity of Tunisian date palms (Phoenix dactylifera L.) revealed by nuclear microsatellite polymprohism. Hereditas 141:278-387
Kahn F, Gluchy D (2002) Variation in morphology of the pistillate flowers of Astrocaryum urostachys (Palmae) in Amazonian Ecuador. Nordic J of Bot 22:353-360
Vigouroux Y, Matsuoka Y, Doebley J (2003) Directional evolution for microsatellite size in maize. Mol Biol Evol 20:1480-1483
Matsuoka Y, Vigouroux Y, Goodman MM, Sanchez G J, Buckler E, Doebley J (2002) A single domestication for maize shown by multilocus microsatellite genotyping. PNAS 99:6080-6084
Thuillet AC, Bru D, David J, Roumet P, Santoni S, Sourdille P, Bataillon T (2002) Direct estimation of mutation rate for 10 microsatellite loci in durum wheat, Triticum turgidum (L.) Thell. ssp durum desf. Mol Biol Evol 19:122-125
Vigouroux Y, Jaqueth JS, Matsuoka Y, Smith OS, Beavis WD, Smith JS, Doebley J (2002) Rate and pattern of mutation at microsatellite loci in maize. Mol Biol Evol 19:1251-1260
Vigouroux Y, McMullen M, Hittinger CT, Houchins K, Schulz L, Kresovich S, Matsuoka Y, Doebley J (2002) Identifying genes of agronomic importance in maize by screening microsatellites for evidence of selection during domestication. PNAS 99:9650-9655
Renno JF, Mariac C, Poteaux C, Bezançon G, Lumaret R (2001) Haplotype variation of cpDNA in the agamic grass complex Pennisetum section Brevivalvula (Poaceae). Heredity 86:537-544
Chapin MH, Essig FB, Pintaud JC (2001) The morphology and histology of the fruits of Pelagodoxa (Arecaceae): Taxonomic and biogeographical implications. Systematic Bot 26:779-785
Pintaud JC, Jaffré T, Puig H (2001) Chorology of New Caledonian palms and possible evidence of Pleistocene rain forest refugia. C R Acad Sci III 324:453-463
Vigouroux Y, Couvet D (2000) The hierarchical island model revisited. Genet Sel Evol 32:395-402
Mariac C, Trouslot P, Poteaux C, Bezançon G, Renno JF (2000) Chloroplast DNA extraction from herbaceous and woody plants for direct restriction fragment length polymorphism analysis. Biotechniques 28:110-113
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