Permanent staff

Photo (c) IRD

Research interest

My research focuses on plant genetics and genomics, with emphasis on the use of genetic diversity and interspecific introgressions in gene discovery and applications to pre-breeding.

Current projects

Analysis of meiotic recombination in cultivated rice

IRD, CIAT, University of Arizona, Yale University

Meiotic recombination is the basis of plant breeding. It allows gene shuffling, and thus the creation of new phenotypes. The frequency of occurrence of meiotic recombination events (crossing over, CO) determines the intensity of this mixing and is therefore a key factor in the breeding process. We are interested in the influence of the structural variation between two genomes on the frequency of occurrence of COs in the F1 hybrid resulting from the cross between these genomes. For this purpose, we produced three datasets: (1) Illumina genomic sequencing of 2000 F2 progeny from an indica/japonica cross; Illumina GBS sequencing of the ten NAM populations that we created at CIAT (1900 lines) (collaboration S. Dellaporta, Yale University); (3) PacBio de novo sequencing of the two parental lines of the F2 population and of all parents of the NAM population (collaboration R. Wing, University of Arizona). Comparison of these datasets using bioinformatics and modeling methods will provide a better understanding of how structural differences (or similarities) between genomes modify the appearance of COs. This will lead to the development of a predictive model of recombination as a function of genomic structural variation and provide tools for plant breeding.

An ANR grant (generic AO 2021, title: LANDSREC - The high-resolution landscapes in rice meiotic recombination) has just been obtained to complete this project, in collaboration with CIRAD and the University of Paris-Saclay, which will study other aspects of recombination control.

New imputation methods for genetic data

IRD

Data produced by Illumina sequencing with low coverage in order to genotype individuals have two drawbacks: (1) large proportion of missing data and (2) noise in the data due to various factors (chromosomal shuffles, inversions, indels, etc). It is necessary to impute the data in order to make them usable by analysis software. We are developing a new imputation algorithm, NOISYmputer, which produces data sets of better quality than those currently available. The recently obtained ANR LANDSREC project will also fund this research.

Fine mapping and cloning of QTLs for rice resistance to Rice hoja blanca virus

IRD, CIAT, FLAR, Fedearroz, Universidad Javeriana-Cali

The identification of two quantitative effect loci (QTL), which are the main factors of resistance to the disease caused by the Rice hoja blanca virus, led us to try to identify the genes underlying the QTL. In the framework of the OMICAS project, we are knocking out different genes in the QTLs using the CRISPR-Cas9 editing technology in order to study the behavior of the edited lines and to conclude on the identity of the genes responsible for the resistance. In addition, we are developing molecular marking tools to be able to use QTLs for the creation of elite RHBV resistant material (marker assisted selection). NARS Fedearroz and FLAR are the main users of these tools.

Past projects

Genetic approach by Nested Association Mapping (NAM) | CIAT, IRD, Yale University, Génoscope

Results: (1) First Nested Association Mapping population of rice (2) New GBS data imputation algorithms (3) Detection of indica x japonica sterility genes (4) Demonstration of the power of the NAM scheme by analysis of known flowering genes (5) Ultra-saturated genetic map.

Study of the heredity of rice resistance to the parasitic plant Striga | CIAT, IRD , Sheffield University

Results: (1) Fine mapping of a QTL for resistance to Striga hermonthica and identification of the underlying gene by CRISPR-Cas9 (2) Identification of several QTL for resistance to S. asiatica.

Exploitation of genetic diversity in wild rice |CIAT, IRD-Montpellier, Cornell University

Results: (1) First O. sativa x O. glaberrima genetic linkage map (2) Six populations of interspecific introgression lines (CSSLs) (3) Phenotyping of material for different traits (4) Gene/QTL localization (sterility - RSNV - height - tillering - yield) (5) New knowledge on interspecific hybridizations (6) Involvement in the complete sequencing of three species of the genus Oryza (6) Creation of a "universal" interspecific genetic map.

Creation of interspecific bridges (iBridges) | CIAT, IRD, WARDA, PhilRice, IER Mali, INERA Burkina Faso

Results: (1) Fine mapping of an interspecific sterility gene (S1). (2) Innovative strategy based on S1 for the creation of germplasm that allowed the introduction of genes of interest from O. glaberrima into cultivated rice O. sativa.

Characterization and multiplication of a collection of rice T-DNA lines | CIAT, IRD, CIRAD, Biogemma

Results: 28,000 T-DNA lines phenotypically characterized, data organized in a database (Paddy Genes Book) and updated and online on the OryzaTagLine database.

Study of the heredity of resistance in African rice to the nematode Heterodera sacchari | IRD-Montpellier, LEST-IRD

Results: (1) Codominant inheritance of resistance (2) Precise location of the Hsa-1 gene on rice chromosome 11.

Genetic and biochemical study of rice aroma | IRD-Montpellier, CIRAD

Results: (1) Precise mapping of the Sk gene and two secondary genes (QTL) (2) Physical mapping of Sk on a contig of 4 BAC clones that led to cloning of the gene.

Identification of new resistance genes in rice to Magnaporthe grisea | IRD-Montpellier, CIRAD

Results: (1) Improved understanding of the genetics of the trait (2) Localization and validation of several new resistance gene analogues - IRD-Montpellier.

Development of theoretical models for genetic mapping | Uté Montpellier, Cirad -Montpellier

Results: (1) Mathematical models for more accurate genetic mapping (2) MapDisto software.

Main grants

ANR project: LANDSREC - The high-resolution landscapes in rice meiotic recombination (2022-2025)

Component 6 'Food Security' of the 'OMICAS' program (World Bank - Colombian Ministry of Research) (2018-2021)

Generation Challenge Programme project to create a Nested Association Mapping meta-population for rice (2008-2013)

Genoplante project aiming to perform extensive phenotypic analysis of a collection of 28,000 rice T-DNA insertion lines (2002-2008)

A 3-year project funded by the Colombian Ministry of Agriculture and Development (MADR) and a private partner (Fedearroz) (3 partners). Title: "Strategic research in rice improvement to obtain improved material and new tools for marker-assisted selection of traits of interest

Generation Challenge Programme international project with five partners (IRD, France; Embrapa, Brazil; Fedearroz, Colombia; CIAT, Colombia; WARDA, Benin) aiming at the construction of CSSL lines and the development of SNP markers (2005-2009)

Generation Challenge Programme international project "iBridges" with nine partners from eight countries (2007-2010)

Publications

Articles

Zhou Y, D Chebotarov, D Kudrna, V Llaca, S Lee, S Rajasekar, N Mohammed, N Al-Bader, C Sobel-Sorenson, P Parakkal, LJ Arbelaez, N Franco, N Alexandrov, R Sackville Hamilton, H Leung, R Mauleon, M Lorieux, K McNally, A Zuccolo, J Zhang, RA Wing. 2020. A platinum standard pan-genome resource that represents the population structure of Asian rice. Nature Scientific Data, 7:article 113

Harrop TW, O Mantegazza, AM Luong, K Béthune, M Lorieux, S Jouannic and H Adam, 2019. A set of AP2-like genes is associated with inflorescence branching and architecture in domesticated rice. Journal of Experimental Botany, 70:5617-5629

Thi Phan N, D De Waele, M Lorieux, L Xiong and S Bellafiore. 2018. A Hypersensitivity-Like Response to Meloidogyne graminicola in rice (Oryza sativa L.). Phytopathology, 108:521-528

Heffelfinger C, C Fragoso, M. Lorieux. 2017. Constructing linkage maps in the genomics era with MapDisto 2.0. Bioinformatics, in press. DOI 0.1093/bioinformatics/btx177

Fragoso C, M Moreno, Z Wang, C Heffelfinger, LJ Arbelaez, JA Aguirre, N Franco, LE Romero, K Labadie, H Zhao, SL Dellaporta, M Lorieux. 2017. Genetic Architecture of a Rice Nested Association Mapping Population. Genes Genomes Genetics 7:1913-1926. DOI 10.1534/g3.117.041608

Djedatin G, M-N Ndjiondjop, A Sanni, M Lorieux, V Verdier, A Ghesquière. Identification of novel major and minor QTLs associated with Xanthomonas oryzae pv. oryzae (African strains) resistance in rice (Oryza sativa L.). 2016. Rice 9:18. DOI 10.1186/s12284-016-0090-9

Ogawa S, MO Valencia, M Lorieux, JD Arbelaez, SR McCouch, M Ishitani, M Gomez Selvaraj. 2016. Identification of QTLs associated with agronomic performance under nitrogen-deficient conditions using chromosome segment substitution lines of a wild rice relative, Oryza rufipogon. Acta Physiol Plant 38: 1. DOI 10.1007/s11738-016-2119-5

Rebolledo MC, M Dingkuhn, B Courtois, Y Gibon, A Clément-Vidal, DF Cruz, J Duitama, M Lorieux and D Luquet. 2015. Phenotypic and genetic dissection of component traits for early vigour in rice using plant growth modelling, sugar content analyses and association mapping. Journal of Experimental Botany 66:5555-5566. DOI: 10.1093/jxb/erv258

Arbelaez JD, L T Moreno, N Singh, C-W Tung, L G Maron, Y Ospina, C P Martinez, C Grenier, M Lorieux, S R McCouch. 2015. Development and GBS-genotyping of Introgression Lines (ILs) using two wild species of rice, O. meridionalis and O. rufipogon, in a common recurrent parent, O. sativa cv. Curinga. Plant Breeding 35:81. DOI 10.1007/s11032-015-0276-7

Duitama J, A Silva, Y Sanabria, D F Cruz, C Quintero, C Ballen, M Lorieux, B Scheffler, A Farmer, M Moreno, S Dellaporta, E Torres, J Oard, J Tohme. 2015. Whole genome sequencing of elite rice cultivars reveals recurrent copy number variation, diversity patterns, and variety specific introgression events in Oryza sativa spp. japonica and indica. PLOS One. DOI: 10.1371/journal.pone.0124617

Dufey I, X Draye, S Lutts, M Lorieux, CP Martinez, P Bertin. 2015. Novel QTL in an interspecific backcross Oryza sativa x Oryza glaberrima for resistance to iron toxicity in rice. Euphytica 204:609. DOI 10.1007/s10681-014-1342-7

Pariasca-Tanaka J, M Lorieux, C He, SR McCouch, M J Thomson, M Wissuwa. 2014. Development of a SNP genotyping panel for detecting polymorphisms in Oryza glaberrima/O. sativa interspecific crosses. Euphytica 201:67-78

Romero LE, I Lozano, A Garavito, SJ Carabali, M Triana, N Villareal, L Reyes, MC Duque, CP Martinez, L Calvert, M Lorieux. 2014. Major QTLs control resistance to Rice hoja blanca virus and its vector Tagosodes orizicolus. Genes Genomes Genetics 4:133-142

Orjuela J, F Sabot, S Chéron, Y Vigouroux, H Adam, H Chrestin, K Sanni, M Lorieux, A Ghesquière. 2014. An extensive analysis of the African rice genetic diversity through a global genotyping. Theoretical and Applied Genetics 127: 2211-2223.

Ogawa S, M Gomez Selvaraj, A Joseph Fernando, M Lorieux, M Ishitani, S McCouch, JD Arbelaez. 2014. N and P mediated seminal root elongation response in rice seedling. Plant and Soil 375:303-315

Spindel J, M Wright, C Chen, J Cobb, J Gage, S Harrington, M Lorieux, N Ahmadi, SR McCouch. 2013. Bridging the genotyping gap: using genotyping-by-sequencing (GBS) to add high-density SNP markers and new value to traditional bi-parental mapping and breeding populations. Theor App Genet 126:2699-2716

AL-Tam FM, H Adam, A dos Anjos, M Lorieux, P Larmande, A Ghesquière, S Jouannic, HR Shahbazkia. 2013. P-TRAP: a Panicle Trait Phenotyping Tool. BMC Plant Biology 13:122

Lorieux M, M Blein, J Lozano, M Bouniol, G Droc, A Diévart, C Périn, D Mieulet, N Lanau, M Bès, C Rouvière, C Gay, P Piffanelli, P Larmande, C Michel, I Barnola, C Biderre-Petit, C Sallaud, P Perez, F Bourgis, A Ghesquière, P Gantet, J Tohme, JB Morel, E Guiderdoni. 2012. In-depth molecular and phenotypic characterization in a rice insertion line library facilitates gene identification through reverse and forward genetics approaches. Plant Biotechnology Journal 10:555-568

Lorieux M. 2012. MapDisto: fast and efficient computation of genetic linkage maps. Molecular Breeding 30:1231-1235

Bocco, R., M. Lorieux, P.A. Seck, K. Futakuchi, B. Manneh, H. Baimey, M.N. Ndjiondjop. 2012. Agro-morphological characterization of a population of introgression lines derived from crosses between IR 64 (O. sativa indica) and TOG 5681 (O. glaberrima) for drought tolerance. Plant Science 183:65-76

Guyot, R., A. Garavito, F. Gavory, S. Samain, J. Tohme, A. Ghesquière, M. Lorieux. 2011. Patterns of sequence divergence and evolution of the S1 orthologous regions between Asian and African cultivated rice species. PLOS One 6:e17726

Garavito A., R. Guyot, J. Lozano, F. Gavory, S. Samain, O. Panaud, J. Tohme, A. Ghesquière, M. Lorieux. 2010. A genetic model for the female sterility barrier between Asian and African cultivated rice species. Genetics 185:1425-1440

Gutiérrez A., S. Carabali, O.X. Giraldo, C.P. Martinez, F. Correa, G. Prado, J. Tohme, M. Lorieux. 2010. Identification of a Rice Stripe Necrosis Virus resistance locus and yield component QTLs using Oryza sativa x O. glaberrima introgression lines. BMC Plant Biology 10:6

Orjuela J., A. Garavito, M. Bouniol, J.D. Arbelaez, L. Moreno, J. Kimball, G. Wilson, J.F. Rami, J. Tohme, S.R. McCouch, M. Lorieux. 2010. A Universal Core Genetic Map for rice. Theoretical and Applied Genetics, 120:563-572

Liakat Ali M., P.L. Sanchez, S.B. Yu, M. Lorieux, G.C. Eizenga. 2010. Chromosome Segment Substitution Lines: A Powerful Tool for the Introgression of Valuable Genes from Oryza Wild Species into Cultivated Rice (O. sativa). Rice 3:218-234

Ammiraju J., X. Song, M. Luo, N. Sisneros, A. Angelova, D. Kudrna, H. Kim, Y. Yu, J.L. Goicoechea, M. Lorieux, N. Kurata, D. Brar, D. Ware, S. Jackson, R. Wing. 2010. The Oryza BAC resource: a genus-wide and genome scale tool for exploring genome evolution and leveraging useful genetic diversity from wild relatives. Breeding Science 60:536-543

Bourgis F., R. Guyot, H. Gherbi, E. Tailliez, I. Amabile, J. Salse, M. Lorieux, M. Delseny, A. Ghesquière. 2008. Characterization of the major fragance gene from an aromatic japonica rice and analysis of its diversity in Asian cultivated rice. Theoretical and Applied Genetics 117:353-368

Larmande P., C. Gay, M. Lorieux, C. Perin, M. Bouniol, G. Droc, C. Sallaud, P. Perez, I. Barnola, C. Biderre-Petit, J. Martin, J.B. Morel, A. Johnson, F. Bourgis, A. Ghesquière, M. Ruiz, B. Courtois, E. Guiderdoni. 2008. Oryza Tag Line, a phenotypic mutant database for the Génoplante rice insertion line library. Nucleic Acids Research 36:D1022-D1027

Semagn K., M.-N. Ndjiondjop, M. Lorieux, M. Cissoko, M. Jones, S.R. McCouch. 2007. Molecular profiling of an interspecific rice population derived from a cross between WAB56-104 (Oryza sativa) and CG 14 (Oryza glaberrima). African Journal of Biotechnology 6:2014-2022

Lorieux M., G. Reversat, S. X. Garcia Diaz, C. Denance, N. Jouvenet, Y. Orieux, N. Bourger, A. Pando-Bahuon, A. Ghesquière. 2003. Linkage mapping of Hsa-1Og, a resistance gene of African rice to the cyst nematode, Heterodera sacchari. Theoretical and Applied Genetics 107:691-696

Coulibaly I., J. Louarn, M. Lorieux, A. Charrier, S. Hamon, M. Noirot. 2003. Pollen viability restoration in a Coffea canephora P. and C. heterocalyx Stoffelen backcross. QTL identification for marker-assisted selection. Theoretical and Applied Genetics 106:311-316

Coulibaly I., B. Revol, M. Noirot, V. Poncet, M. Lorieux, C. Carasco-Lacombe, J. Minier, M. Dufour, P. Hamon. 2003. AFLP and SSR polymorphism in a Coffea interspecific backcross progeny [(C. heterocalyx x C. canephora) x C. canephora]. Theoretical and Applied Genetics 107:1148-1155

Langar K., M. Lorieux, E. Desmarais, Y. Griveau, L. Gentzbittel, A. Bervillé. 2003. Combined mapping of DALP and AFLP markers in cultivated sunflower using F9 recombinant inbred lines. Theoretical and Applied Genetics 106:1068 - 1074

Sallaud C., M. Lorieux, E. Roumen, D. Tharreau, R. Berruyer, P. Svestasrani, O. Garsmeur, A. Ghesquière, J.-L. Nottéghem. 2003. Identification of five new blast resistance genes in the highly blast-resistant rice variety IR64 using a QTL mapping strategy. Theoretical and Applied Genetics 106:794-803

Coulibaly I., M. Noirot, M. Lorieux, A. Charrier, S. Hamon, J. Louarn. 2002. Introgression of self-compatibility from Coffea heterocalyx to the cultivated species Coffea canephora. Theoretical and Applied Genetics 105: 994-999.

Brès-Patry C., M. Lorieux, G. Clément, M. Bangratz, A. Ghesquière. 2001. Heredity and genetic mapping of domestication-related traits in a temperate japonica weedy rice. Theoretical and Applied Genetics 102:118-126

Lashermes P., M. Combes, N. Prakash, P. Trouslot, M. Lorieux, A. Charrier. 2001. Genetic linkage map of Coffea canephora: effect of segregation distortion and analysis of recombination rate in male and female meioses. Genome 44:589-596

Ventelon M., M. Deu, O. Garsmeur, A. Doligez, A. Ghesquière, M. Lorieux, J.-F. Rami, J.-C. Glaszmann, L. Grivet. 2001. A direct comparison between the genetic maps of sorghum and rice. Theoretical and Applied Genetics 102:379-386

Lorieux M., M.-N. Ndjiondjop, A. Ghesquière. 2000. A first interspecific Oryza sativa x O. glaberrima microsatellite-based genetic linkage map. Theoretical and Applied Genetics 100:593-601

Ky C.-L., P. Barre, M. Lorieux, P. Trouslot, S. Akaffou, J. Louarn, A. Charrier, S. Hamon, M. Noirot. 2000. Interspecific genetic linkage map, segregation distortion and genetic conversion in coffee (Coffea sp.). Theoretical and Applied Genetics 101:669-676

Albar L., M. Lorieux, N. Ahmadi, I. Rimbault, A. Pinel, A.A. Sy, D. Fargette, A. Ghesquière. 1998. Genetic basis and mapping of the resistance to Rice yellow mottle virus. I: QTLs identification and relationship between resistance and plant morphology. Theoretical and Applied Genetics 97:1145-1154

Pressoir G., L. Albar, N. Ahmadi, I. Rimbault, M. Lorieux, D. Fargette, A. Ghesquière. 1998. Genetic basis and mapping of the resistance to Rice yellow mottle virus. II: Evidence of a complementary epistasis between two QTLs. Theoretical and Applied Genetics 97:1155-1161

Ghesquière A., L. Albar, M. Lorieux, N. Ahmadi, D. Fargette, N. Huang, S. McCouch, J.-L. Nottéghem. 1997. A major QTL for Rice yellow mottle virus resistance maps to a cluster of blast resistance genes on chromosome 12. Phytopathology 87:1243-1249

Ghesquière A., J. Séquier, G. Second, M. Lorieux. 1997. First steps towards a rational use of African rice, Oryza glaberrima, in rice breeding through a 'contig line' concept. Euphytica 96:31-39

Lorieux M., M. Petrov, N. Huang, E. Guiderdoni, A. Ghesquière. 1996. Aroma in rice: genetic analysis of a quantitative trait. Theoretical and Applied Genetics 93:1145-1151

Lorieux M., B. Goffinet, X. Perrier, D. González de León, C. Lanaud. 1995. Maximum-likelihood models for mapping genetic markers showing segregation distortion. 1. Backcross populations. Theoretical and Applied Genetics 90:73-80

Lorieux M., X. Perrier, B. Goffinet, C. Lanaud, D. González de León. 1995. Maximum-likelihood models for mapping genetic markers showing segregation distortion. 2. F2 populations. Theoretical and Applied Genetics 90:81-89

Quillet M.-C., N. Madjidian, Y. Griveau, H. Serieys, M. Tersac, M. Lorieux, A. Bervillé. 1995. Mapping genetic factors controlling pollen viability in an interspecific cross in Helianthus sect. Helianthus. Theoretical and Applied Genetics 91:1195-1202

Luro F., M. Lorieux, F. Laigret, J.M. Bové, P. Ollitrault. 1995. Genetic mapping of an intergeneric Citrus hybrid using molecular markers. Fruits 49, n° 5-6:404-408 (english), 483-485 (french)

Goffinet B., J. Beckmann, D. Boichard, M. Causse, A. Charcosset, C. Chevalet, C. Christophe, J.J. Colleau, F. Demenais, C.E. Durel, J.-M. Elsen, J.L. Foulley, A. Gallais, K.U. Götz, F. Hospital, A. Krémer, M. Lorieux, M. Lefort-Buson, P. Le Roy, P. Loisel, B. Mangin, A. Maurice, L. Ollivier, X. Perrier, O. Pons, A. Rebaï, F. Rodolphe, M. San Cristobal, J. Vu Tien. 1994. Méthodes mathématiques pour l'étude des gènes contrôlant des caractères quantitatifs. Genetics Selection Evolution 26 (suppl 1):9s-20s

Other articles

Lorieux M. 2021. Direct fast estimator for recombination frequency in the F2 cross. BioRxiv doi.org/10.1101/2021.04.20.440219

Santos, J. D., Billot, C., Chebotarov, D., Droc, G., Lorieux, M., Mcnally, K. L., & Glaszmann, J. C. (2020). Multiple streams of genetic diversity in Japonica rice. BioRXiv, 78, 193-41. http://doi.org/10.1101/2020.01.23.915918

Lorieux M, C Sosa, A Gkanogiannis A, C Fragoso and J-F Rami. 2019. NOISYmputer: genotype imputation in bi-parental populations for noisy low-coverage next-generation sequencing data. BioRxiv doi.org/10.1101/658237

Zhou, Y., Chebotarov, D., Kudrna, D., Llaca, V., Lee, S., Rajasekar, S., et al. 2019. Twelve Platinum-Standard Reference Genomes Sequences (PSRefSeq) that complete the full range of genetic diversity of Asian rice, BioRxiv doi.org/10.1101/2019.12.29.888347

Lorieux M. 2018. Is this a fake QTL? A short note on analysis of multiple QTL peaks on the same chromosome. BioRxiv doi.org/10.1101/270736

Cruz-Gallego M, MC Rebolledo, JB Cuasquer, D Cruz, AL Peña-Fernández, C Quintero, EA Silva-Córdoba, M-F Álvarez, S Jojoa-Cruz, M Lorieux, JJ Stuart and F Correa. 2018. Identification of new sources of resistance to RHBV-Rice hoja blanca virus. Acta Agronómica, 67(2)

Ndjiondjiop, M. N., PA Seck, M Lorieux, K Futakuchi, KN Yao, G Djedatin, M Sow, et al.. 2012. Effect of Drought on Oryza glaberrima Rice Accessions and Oryza glaberrima Derived-lines. Asian Journal of Agricultural Research 6:144-157

Guimaräes, CM, LF Stone, M Lorieux, JP de Oliveira, GC de O. Alencar, RAA Dias. 2010. Infrared thermometry for drought phenotyping of inter and intra specific upland rice lines. Revista Brasileira de Engenharia Agricola e Ambiental, 14:148-154

Ghneim Herrera T, AJ Pieters, I Pérez Almeida, G Torrealba, CP Martinez, M Lorieux, J Tohme. 2007. Efforts for breeding drought tolerant rice in Venezuela. Plant Genetic Resources Newsletter 149:46-47

Books and book chapters

Martínez, C. P., Torres, E. A., Chatel, M., Mosquera, G., Duitama, J., Ishitani, M., Selvaraj, M., Dedicova, B., Tohme, J., Grenier, C., Lorieux, M., Cruz, M., Berrío, L., Corredor, E., Zorrilla de San Martin, G., Breseghello, F., Peixoto, O., Colombari Filho, J. M., de Castro, A. P., Lopes, S. I. G., Barbosa, M., Daltrozzo Funck, G. R., Blanco, P., Pérez de Vida, F., Molina, F., Rosas, J., Martínez, S., Bonnecarrere, V., Garaycochea, S., Carracelas, G., Marin, A., Correa-Victoria, F., Camargo, I., Bruzzone, C. B. 2014. Rice Breeding in Latin America. In: Plant Breeding Reviews: Volume 38 (ed J. Janick), John Wiley & Sons, Inc., Hoboken, New Jersey. doi: 10.1002/9781118916865.ch05

Lorieux M, A Garavito, J Bouniol, A Gutiérrez, M-N Ndjiondjop, R Guyo, CP Martinez, J Tohme, A Ghesquière. 2013. Unlocking the O. glaberrima treasure for rice breeding in Africa. In « Realizing Africa's Rice Promise ». Marco Wopereis and David Johnson, Eds. CABI, London

Zhou F, H He, H Chen, H Yu, M Lorieux, Y He. 2013. Genomics-Based Breeding Technology. In: Q. Zhang and R.A. Wing (eds.), Genetics and Genomics of Rice, Plant Genetics and Genomics: Crops and Models 5, DOI 10.1007/978-1-4614-7903-1_22, © Springer Science+Business Media New York 2014

Lorieux M (2006) Exploring natural genetic variation: Developing genomic resources and introgression lines for AA genome rice relatives. In: Rocchi D (ed) France and the CGIAR: delivering scientific results for agricultural development. CGIAR publications, Washington, USA, p 103

Ghesquière A, Ahmadi N, Albar L, Fargette D, Jones M, Lorieux M, Ndjiondjop M-N, Sorho F (2006) Improving rice for Africa: Resistance to rice yellow mottle virus and the breeding potential of O. glaberrima. In: Rocchi D (ed) France and the CGIAR: delivering scientific results for agricultural development. CGIAR publications, Washington, USA, pp 30-33

Guiderdoni E, Courtois B, Huang N, McCouch S, Ghesquière A, Lorieux M, Filloux D, Albar L, Ahmadi N, Tharreau D, Nottéghem J-L (2006) The IR64-Azucena mapping population. In: Rocchi D (ed) France and the CGIAR: delivering scientific results for agricultural development. CGIAR publications, Washington, USA, pp 34-38

Hamon P, Coulibaly I., Revol B., Noirot M, Poncet V, Lorieux M, Carasco-Lacombe C., Minier J., Dufour M., Hamon S. AFLP and SSR polymorphism in a Coffea interspecific backcross progeny (C. heterocalyx x C. canephora) x (C. canephora) (2005). In : ASIC 2004 : 20th international conference on coffee science. Paris : ASIC, 2005, p. 699-701. ASIC 2004 : International Conference on Coffee Science, 20. ISBN 2-900212-19-7

Tharrau D, Roumen E, Lorieux M, Price A, Dioh W, Ghesquière A, Lebrun MH, Nottéghem JL (2000) New tools for resistance gene characterisation in rice. Advances in rice blast research. In : Book Series: Developments in plant pathology vol. 15, pp 54-62

Ndjiondjop MN, Lorieux M, Séquier J, Fargette D, Reversat G, Second G, Ghesquière A. Application des marqueurs moléculaires et de la cartographie génétique à l'utilisation du potentiel de l'espèce africaine de riz cultivé (O. glaberrima Steud.) en amélioration des plantes. In : Jones M.P. (ed.) : Interspecific hybridization : progress and prospects. Proceedings of the workshop : Africa/Asia joint research on interspecific hybridization betwen the African and Asian rice species (O. glaberrima and O. sativa. Bouaké (CIV) : ADRAO, 1997, p. 123-139. ISBN 92-9113-113-X

Lorieux M. Aspects statistiques de la cartographie des marqueurs moléculaires. Editions du Cirad, Paris, 1994. 57 pp.