Publications

Roy, N.; Kshattry, M.; Mandal, S.; Jolly, M.K.; Bhattacharyya, D.K., Barah, P. An Integrative  Systems Biology Approach  Identifies Molecular Signatures  Associated with Gallbladder Cancer Pathogenesis. J. Clin. Med. 2021,10(16), 3520. [Link]

Chowdhury HA, Barah P, Bhattacharyya DK, Kalita JK (2021), Identification of potential Parkinson’s disease biomarkers using computational biology approaches, Network Modeling Analysis in Health Informatics and Bioinformatics 10 (1), 1-16. [Link]

Roy N, Gaikawd M, Bhattacharyya D.K., Barah P. (2020), Identification of systems level molecular signatures from glioblastoma multiforme derived extracellular vesicle, Journal of Molecular Neuroscience (2020 Nov 24) [Link]

Sahu, A., Das, A., Saikia, K., Barah, P, Temperature differentially modulates the transcriptome response in Oryza sativa to Xanthomonas oryzae pv. oryzae infection, Genomics (Elsevier),112 (6),4842-4852 NOV 2020   [Link]

Patowary P., Bhattacharyya D.K., Barah P., Identifying Critical Genes in Esophageal Squamous Cell Carcinoma  using an Ensemble Approach, Informatics in Medicine Unlocked (Elsevier),  Volume 18, 2020, 100277. (Link)

1. Sahu A,  Chowdhury HA., Gaikwad M, Chongtham C, Talukdar U, Phukan JK,  Bhattacharyya DK, Barah P., Integrative network analysis identifies differential regulation of neuroimmune system in Schizophrenia and Bipolar disorder,   Brain, Behavior and Immunity (BBI) – Health (Elsevier),Volume 2, February 2020, 100023  (Link)

2. Patowary P., Bhattacharyya D.K., Barah P. (2019) Biomarker Identification for ESCC Using Integrative DEA. In: Deka B., Maji P., Mitra S., Bhattacharyya D., Bora P., Pal S. (eds) Pattern Recognition and Machine Intelligence. PReMI 2019. Lecture Notes in Computer Science, vol 11942. Springer, Cham. (Link)

3. Kakati, T., Bhattacharyya D.K., Barah, P., Kalita, J.K.; Comparison of Methods for Differential Co-expression Analysis for Disease Biomarker Prediction, Computers in Biology and Medicine (Elsevier),  113, 2019, 103380 [Link]

Körber V, Yang J, Barah P...Reifenberger G, Höfer T, Lichter P; EvolutionaryTrajectories of IDHWT Glioblastomas Reveal a Common Path of Early Tumorigenesis Instigated Years ahead of Initial Diagnosis, Cancer Cell. 2019 Mar 5. [Link]

Singh A, Borah AK, Deka K, Gogoi AP, Verma K, Barah P, Saha S., Arginylation regulates adipogenesis by regulating expression of PPARγ at transcript and protein level., Biochim Biophys Acta Mol Cell Biol Lipids. 2019 Apr;1864(4):596-607. [Link]

Mahanta A, Ganguli P, Barah P, et al., Integrative Approaches to Understand the Mastery in Manipulation of Host Cytokine Networks by Protozoan Parasites with Emphasis on Plasmodium and Leishmania Species., Front Immunol. 2018 Feb 23;9:296. [Link]

Pankaj Barah et al; Transcriptional regulatory networks in Arabidopsis thaliana during single and combined stresses., Nucleic Acids Research, 2015 Dec 17, Oxford University Press. [Link] 

Pankaj Barah and Atle M Bones; Multi-dimensional approaches for studying plant defence against insects: from ecology to omics and synthetic biology. Journal of Exp. Bot., 2015 Feb;66(2):479-493,Oxford University Press., [Link] 

Pankaj Barah and Kaveri Bhuyan; India: Endangered species damned by dams. Nature 515, 37 (06 November 2014) (Correspondence)  [Link]

Pankaj Barah et al; Genome scale transcriptional response diversity among ten ecotypes of Arabidopsis thaliana during heat stress.  Front. in Plant Sci. 2013 Dec 26;4:532.  [Link]

Pankaj Barah, Naresh Doni Jayavelu et al.Genome Scale Cold Response Regulatory Networks in ten   Arabidopsis  thaliana Ecotypes. BMC Genomics, 2013 Oct 22;14(1):722 (*Highly accessed) [Link]

Simon Rasmussen, Pankaj Barah et al; Transcriptome response to combinations of stresses in Arabidopsis thaliana. Plant Physiol, 2013 Feb, 161: 1783-1794. (*Top ten most read paper). [Link]

Pankaj Barah, Per Winge, Anna Kusnierczyk , Diem Hong Tran and Atle M Bones; Molecular signatures of specific and common defense responses in Arabidopsis thaliana during an insect feeding and a bacterial infection. PLoS One, 2013;8(3):e58987. [Link]

Sankaran Sandhya, Saane Sudha Rani, Barah Pankaj,  Madabosse Kande Govind, Bernard Offman, Narayanaswamy Srinivasan and Ramanathan Sowdhamini; Length variations amongst protein domain superfamilies and consequences on structure and function. PLoS One, 2009;4(3):e4981. [Link]

Sandhya. S, Pankaj B, M. K. Govind, B. Offman, N. Srinivasan,and R. Sowdhamini; CUSP: an algorithm to distinguish structurally conserved and unconserved regions in protein domain alignments and its  application in the study of large length variations. BMC Structural Biology, 2008, 8:28. [Link]

Pankaj Barah and Somdatta Sinha ; Analysis of Protein Folds Using Protein Contacts Networks. PRAMANA: Journal of Physics, August 2008, Vol. 71, (No.2). [Link]

 Jens Rohloff, Pankaj Barah, and Atle M. Bones, Improving crop productivity and abiotic stress tolerance in cultivated Fragaria using omics and systems biology approach. , in “Improving Crop Productivity in Sustainable Agriculture”, pp 451-480, Wiley-VCH Germany, ISBN: 978-3-527-33242-7, 2012. [Link]

Konika Chawla*, Pankaj Barah*, Martin Kuiper, and Atle M. Bones; "Systems Biology: a promising tool to study abiotic stress responses” in "Omics and Plant Abiotic Stress Tolerance", Bentham Publishers, USA (ISBN: No.: 978-1-60805-058-1).  * Equal contribution  [Link]