Embedded Files
The new plugin presents new features:
- Supports two Hamamatsu cameras for double side/dual color/dual mode (Flow and vertical)
detection.
- Control of two pair of galvo (XY) for double side illumination.
- Direct control of XYZ stages and sample rotation.
- Multipositioning acquisition.
- Option to run macros in parallel to acquisition.
- SPIM-Fluid mode for HT LSFM microscopy.
Files
At the bottom of this page you would find all the files you need to run SPIM-Fluid. Be aware that the download arrow is at the right side (please use scroll bar).
The system has been tested and compiled for Micromanager overnight version 1.4.20 (MMSetup_32bit_1.4.20_20141209.exe and MMSetup_64bit_1.4.20_20141209.exe)
http://valelab.ucsf.edu/~MM/nightlyBuilds/1.4/Windows/
The content of the files is as follow:
ArduinoMicroManager_UIC_SAMPLE_ROTATION_MICROSTEP.ino: Firmware for the Arduino Sample flow control.
Arduino_FW.zip: Source code for the device adapter for Arduino Filter wheel control (C++).
Arduino_GM.zip: Source code for the device adapter for Arduino Galvo Mirror control (C++).
Arduino_SR.zip: Source code for the device adapter for Arduino Sample Rotation control (C++).
ThorlabsAPTStage2.zip: Source code for the device adapter for linear stage controller Thorlabs (C++)
Control_SPIM_FLUID.zip: Source code of the Micromanager plugin (Java).
x32.zip: Compiled version for 32 bits. Thorlabs motors only works at 32 bits.
x64.zip: Compiled version for 64 bits.
For installation:
1. Uncompress x32.zip
2. Control_SPIM_FLUID.jar and Config_EX_file.txt should be copy/pasted onto the mmplugin folder.
3. The rest of files (device adapters) should be copy/pasted on the main Micromanager folder.
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