論文・著書等 / Publications

プレプリント / Preprint

Kuroda K, Yamamoto K, Nakai R, Hirakata Y, Kubota K, Nobu MK, Narihiro T (2022) Symbiosis between Patescibacteria and Archaea discovered in wastewater-treating bioreactors. bioRxiv doi.org/10.1101/2022.04.10.487813
Nakai R, Wakana I, Niki H (2021) Internal microbial zonation assists in the massive growth of marimo, a lake ball of Aegagropila linnaei in Lake Akan. bioRxiv doi.org/10.1101/2021.03.20.434239
Nobu MK*, Nakai R*, Tamazawa S, Mori H, Toyoda A, Ijiri A, Suzuki S, Kurokawa K, Kamagata Y, Tamaki H (*equal contribution) (2021) Unique metabolic strategies in Hadean analogues reveal hints for primordial physiology. bioRxiv doi.org/10.1101/2021.04.20.440570

査読付き論文 / Peer-reviewed papers

Suda K, Aze T, Miyairi Y, Yokoyama Y, Matsui Y, Ueda H, Saito T, Sato T, Sawaki Y, Nakai R, Tamaki H, Takahashi H, Morikawa N, Ono S (2022) The origin of methane in serpentinite-hosted hyperalkaline hot spring at Hakuba Happo, Japan: Radiocarbon, methane isotopologue and noble gas isotope approaches. Earth and Planetary Science Letters, 585:117510, doi.org/10.1016/j.epsl.2022.117510
Shimada S*, Nakai R*, Aoki K, Kudoh S, Imura S, Shimoeda N, Ohno G, Watanabe K, Miyazaki Y, Ishii Y, Tateda K (*equal contribution) (2021) Characterization of the first cultured psychrotolerant representative of Legionella from Antarctica reveals its unique genome structure. Microbiology Spectrum, 9:e00424-21, doi.org/10.1128/Spectrum.00424-21 Open Access
Nakai R, Naganuma T, Tazato N, Kunihiro T, Morohoshi S, Koide T, Kusada H, Tamaki H, Narihiro T. (2021) Characterization of Terrihabitans soli gen. nov., sp. nov., a novel 0.2 μm-filterable soil bacterium belonging to a widely distributed lineage of Hyphomicrobiales (Rhizobiales). Diversity, 13:422, doi.org/10.3390/d13090422 Open Access
Nakai R*, Kusada H*, Sassa F, Morigasaki S, Hayashi H, Takaya N, Tamaki H (*equal contribution) (2021) Draft genome sequence of novel filterable Rhodospirillales bacterium strain TMPK1, isolated from soil. Microbiology Resource Announcements, 10:e00393-21, doi.org/10.1128/MRA.00393-21 Open Access
Nakai R, Wakana I, Niki H (2021) Internal microbial zonation during the massive growth of marimo, a lake ball of Aegagropila linnaei in Lake Akan. iScience, 24:102720, doi.org/10.1016/j.isci.2021.102720 Open Access
Iwashita T, Tanaka H, Tamaki H, Nakai R, Yoneda Y, Makino A, Toyama T, Kamagata Y, Morikawa M, Mori K (2021) Isolation and characterization of novel plant growth-promoting bacteria from frond of duckweeds. Japanese Journal of Water Treatment Biology, 57: 1-9, doi.org/10.2521/jswtb.57.1 Open Access
Shimada S, Nakai R, Aoki K, Shimoeda N, Ohno G, Kudoh S, Imura S, Watanabe K, Miyazaki Y, Ishii Y, Tateda K (2021) Chasing waterborne pathogens in Antarctic human-made and natural environments with special reference to Legionella spp. Applied and Environmental Microbiology, 87:e02247-20, doi.org/10.1128/AEM.02247-20
Waite DW, Chuvochina M, Pelikan C, Parks DH, Yilmaz P, Wagner M, Loy A, Naganuma T, Nakai R, Whitman WB, Hahn MW, Kuever J, Hugenholtz P (2020) Proposal to reclassify the proteobacterial classes Deltaproteobacteria and Oligoflexia, and the phylum Thermodesulfobacteria into four phyla reflecting major functional capabilities. International Journal of Systematic and Evolutionary Microbiology, 70:5972-6016, doi.org/10.1099/ijsem.0.004213 Open Access
Nakajima Y, Kojima K, Kashiyama Y, Doi S, Nakai R, Sudo Y, Kogure K, Yoshizawa S (2020) Bacterium lacking a known gene for retinal biosynthesis constructs functional rhodopsins. Microbes and Environments, 35: ME20085, doi.org/10.1264/jsme2.ME20085 Open Access
Nakai R, Naganuma T, Tazato N, Morohoshi S, Koide T (2020) Cell plasticity and genomic structure of a novel filterable Rhizobiales bacterium that belongs to a widely distributed lineage. Microorganisms, 8:1373, doi.org/10.3390/microorganisms8091373 Open Access [Selected as Highlighted Paper on the Microorganisms website]
Nakai R (2020) Size Matters: Ultra-small and Filterable Microorganisms in the Environment. Microbes and Environments, 35:ME20025, doi.org/10.1264/jsme2.ME20025 Open Access
Shimada S*, Nakai R*, Aoki K, Shimoeda N, Ohno G, Miyazaki Y, Kudoh S, Imura S, Watanabe K, Ishii Y, Tateda K (*equal contribution) (2020) Complete genome sequence of novel psychrotolerant Legionella strain TUM19329, isolated from Antarctic lake sediment. Microbiology Resource Announcements, 9:e00253-20, doi; 10.1128/MRA.00253-20 Open Access
Faluaburu MS, Nakai R, Imura S, Naganuma T (2019) Phylotypic characterization of mycobionts and photobionts of rock tripe lichen in East Antarctica. Microorganisms, 7:203, doi: 10.3390/microorganisms7070203 Open Access
Naganuma T, Iinuma Y, Nishiwaki H, Murase R, Masaki K, Nakai R (2018) Enhanced bacterial growth and gene expression of D-amino acid dehydrogenase with D-glutamate as the sole carbon source. Frontiers in Microbiology, 9:2097, doi: 10.3389/fmicb.2018.02097 Open Access [Link]
Hahn MW, Schmidt J, Koll U, Rohde M, Verbarg S, Pitt A, Nakai R, Naganuma T, Lang E (2017) Silvanigrella aquatica gen. nov., sp. nov., isolated from a freshwater lake located in the Black Forest, Germany, description of Silvanigrellaceae fam. nov., Silvanigrellalesord. nov., reclassification of the order Bdellovibrionales in the class Oligoflexia, reclassification of the families Bacteriovoracaceae andHalobacteriovoraceae in the new order Bacteriovoracales ord. nov., and reclassification of the family Pseudobacteriovoracaceae in the order Oligoflexales. International Journal of Systematic and Evolutionary Microbiology, 67, 2555-2568.
Nakai R, Fujisawa T, Nakamura Y, Baba T, Nishijima M, Karray F, Sayadi S, Isoda H, Naganuma T, Niki H (2016) Genome sequence and overview of Oligoflexus tunisiensis Shr3^T in the eighth class Oligoflexia of the phylum Proteobacteria. Standards in Genomic Sciences, 11:90, doi:10.1186/s40793-016-0210-6 Open Access
Nakai R, Fujisawa T, Nakamura Y, Nishide H, Uchiyama I, Baba T, Toyoda A, Fujiyama A, Naganuma T, Niki H (2016) Complete genome sequence of Aurantimicrobium minutum type strain KNC^T, a planktonic ultramicrobacterium isolated from river water. Genome Announcements, 4, e00616-16. doi:10.1128/genomeA.00616-16 Open Access
Nakai R, Baba T, Niki H, Nishijima M, Naganuma T (2015) Aurantimicrobium minutum gen. nov., sp. nov., a novel ultramicrobacterium of the family Microbacteriaceae, isolated from river water. International Journal of Systematic and Evolutionary Microbiology, 65, 4072-4079.
Nakai R, Naganuma T (2015) Oligoflexia, the newest class of the phylum Proteobacteria, consisting of only one cultured species and uncultured bacterial phylotypes from diverse habitats. Journal of Phylogenetics & Evolutionary Biology, 3, 141. doi:10.4172/2329- 9002.1000141 Open Access
Nakai R*, Nishijima M*, Tazato N, Handa Y, Karray F, Sayadi S, Isoda H, Naganuma T (*equal contribution) (2014) Oligoflexus tunisiensis gen. nov., sp. nov., a Gram-negative, aerobic, filamentous bacterium of a novel proteobacterial lineage, and description ofOligoflexaceae fam. nov., Oligoflexales ord. nov. and Oligoflexia classis nov. International Journal of Systematic and Evolutionary Microbiology, 64, 3353-3359. Open Access [Selected as Front Cover] [Link]
Jadoon WA, Nakai R, Naganuma T (2013) Biogeographical note on Antarctic microflorae: endemism and cosmopolitanism. Geoscience Frontiers, 4, 633-646. [Link]
Nakai R, Nakamura K, Jadoon WA, Kashihara K, Naganuma T (2013) Genus-specific quantitative PCR of thraustochytrid protists.Marine Ecology Progress Series, 486, 1-12. Free Access [Selected as Feature Article] [Link]
Nakai R, Shibuya E, Justel A, Rico E, Quesada A, Kobayashi F, Iwasaka Y, Shi G-Y, Amano Y, Iwatsuki T, Naganuma T (2013) Phylogeographic analysis of filterable bacteria with special reference to Rhizobiales strains that occur at cryospheric habitats. Antarctic Science, 25, 219-228. [Link]
Nakai R, Abe T, Baba T, Imura S, Kagoshima H, Kanda H, Kohara Y, Koi A, Niki H, Yanagihara K, Naganuma T (2012) Diversity of RuBisCO gene responsible for CO2 fixation in an Antarctic moss pillar. Polar Biology, 35, 1641-1650. Open Access [Link]
Nakai R, Abe T, Baba T, Imura S, Kagoshima H, Kanda H, Kohara Y, Koi A, Niki H, Yanagihara K, Naganuma T (2012) Eukaryotic phylotypes in aquatic moss pillars inhabiting a freshwater lake in East Antarctica, based on 18S rRNA gene analysis. Polar Biology, 35, 1495-1504. Open Access [Link]
Nakai R, Abe T, Baba T, Imura S, Kagoshima H, Kanda H, Kanekiyo A, Kohara Y, Koi A, Nakamura K, Narita T, Niki H, Yanagihara K, Naganuma T (2012) Microflorae of aquatic moss pillars in a freshwater lake, East Antarctica, based on fatty acid and 16S rRNA gene analyses. Polar Biology, 35, 425-433. Open Access [Link]
Nakai R, Abe T, Takeyama H, Naganuma T (2011) Metagenomic analysis of 0.2–μm–passable microorganisms in deep-sea hydrothermal fluid. Marine Biotechnology, 13, 900-908. [Link]
Yukimura K, Nakai R, Kohshima S, Uetake J, Kanda H, Naganuma T (2009) Spore-forming halophilic bacteria isolated from Arctic terrains: Implications for long-range transportation of microorganisms. Polar Science, 3, 163-169. [Link]

著書 / Books

中井亮佑（2022）[分担執筆] 環境ゲノミクス / Environmental genomics、遺伝学の百科事典、丸善出版. [in Japanese] [Link]
Nakai R, Imura S, Naganuma T (2019) Chapter 2: Patterns of microorganisms inhabiting Antarctic freshwater lakes with special reference to aquatic moss pillars, In: Castro-Sowinski S (ed) The Ecological Role of Micro-organisms in the Antarctic Environment, pp.25-43, Springer, eBook ISBN: 978-3-030-02786-5. [Link]
中井亮佑（2018）追跡！辺境微生物砂漠・温泉から北極・南極まで、築地書館、ISBN: 978-4-8067-1571-9. [in Japanese]
Nakai R, Naganuma T (2015) Chapter 13: Diversity and ecology of thraustochytrid protists in the marine environment. In: Ohtsuka S, Suzaki T, Horiguchi T, Suzuki N, Not F (eds) Marine Protists - Diversity and Dynamics, pp.331-346, Springer, eBook ISBN: 978-4-431-55130-0. [Link]
中井亮佑、長沼毅（2011）第6章辺境の微生物、『微生物の生態学（シリーズ現代の生態学 11）』（日本生態学会編）、p.85-97、共立出版、 ISBN 978-4-320-05739-5. [in Japanese] 【書籍Webサイト】

解説・総説その他 / Others

中井亮佑（2021）極地に生きる未知微生物は何者か？、極限環境生物学会誌、19、25-31. [in Japanese with English abstract and figures]
戎崎俊一、西原秀典、黒川顕、森宙史、鎌形洋一、玉木秀幸、中井亮佑、大島拓、原正彦、鈴木鉄兵、丸山茂徳（2020）原子炉間欠泉に駆動された冥王代原初代謝経路、地学雑誌、129(6)、805. [in Japanese with English abstract, figures and tables]
中井亮佑、長沼毅（2020）微生物の世界に新しい「門」が誕生！砂漠で見つけた超すごいやつ、講談社ブルーバックス、2020.11.17 [in Japanese]
中井亮佑、熊谷洋平、安田まり奈、牧田寛子（2019）国際学会見聞録：The 11th Asian Symposium of Microbial Ecology（ASME）報告、日本微生物生態学会誌、34、74-75. [in Japanese]
中井亮佑（2019）とっても小さいやつらを追って－謎だらけの「辺境微生物」の世界、講談社ブルーバックス、2019.03.02 [Link]
中井亮佑（2019）精密ろ過膜を通り抜ける「ろ過性細菌」、バイオサイエンスとインダストリー（B&I）、77、56-57. [in Japanese]
中井亮佑、玉木秀幸（2017）超微小微生物の実態と多様性、日本微生物生態学会誌、32、43-50. [in Japanese]
中井亮佑 （2017）超微小バクテリアは何者か？、生物工学会誌、95、405-405. [in Japanese]
中井亮佑 （2016）小さいサイズの極限－生物はどこまで小さくなれるのか？、生物の科学遺伝、70、199-203. [in Japanese]
中井亮佑 （2016）スポットライト：イケメン＆イケジョ VOL.22 中井亮佑、日本微生物生態学会誌、31、17-18. [in Japanese]
中井亮佑、長沼毅（2016）自然環境におけるラビリンチュラ類の予想外の多様性、海洋と生物、222、12-17. [in Japanese with English Abstract]
Kudoh S, Takahashi KT, Ishihara T, Tsujimoto M, Nakai R, Suzuki AC, Tanabe Y, Uchida M, Imura S (2016) Limnological parameters in Sôya Coats lakes between the 55th and 56th Japanese Antarctic Research Expeditions in 2014–2015 —Long-term monitoring study —. JARE Data Reports, 344 (Terrestrial Biology 14), 1-7.
Kudoh S, Takahashi KT, Ishihara T, Tsujimoto M, Nakai R, Suzuki AC, Tanabe Y, Uchida M, Imura S (2015) Meteorological data from ice-free areas in Yukidori Zawa, Langhovde, Kizahashi Hama, Skarvsnes and Skallen in Sôya Coast, East Antarctica during 2014– 2015. JARE Data Reports, 339 (Terrestrial Biology 11), 1-6.
中井亮佑 （2013）南極湖沼生態系の進化を探る、日本ゲノム微生物学会ニュースレター、7、10-11. [in Japanese]
中井亮佑 （2013）南極湖沼生態系から紐解く微生物の系統地理、日本微生物生態学会誌、28、6-6. [in Japanese]
中井亮佑、長沼毅（2012）高アルカリ泉に棲む炭酸塩形成微生物群集とその生物地球化学的意義、月刊地球総特集「オマーンに湧出する高アルカリ泉から学ぶアルカリ環境の地球・生物資源科学」、390、159-163. [in Japanese]
中井亮佑 （2011）世界最北端の大学スバールバル大学センター短期留学体験談、第9回地球システム・地球進化ニューイヤースクールレクチャーノート、83-86. [in Japanese]
斉藤雅樹、小谷公人、長沼毅、厚井晶子、中井亮佑、笠原紳（2011）油流出事故回収物の微生物分解処理の研究（第3報）、日本船舶海洋工学会講演会論文集、13、81-82. [in Japanese]
Nakai R, Mashino Y, Kobayashi K, Naganuma T (2010) Effects of high-dose X-ray irradiation on stress-resistant microbes and biochemical substances. KEK Photon Factory Activity Report, #27PartB、235-235.
Nakai R, Yukimura K, Naganuma T (2010) Latitudinal and longitudinal migration of airborne microorganisms. Proceeding of the 10th Edition Tunisia-Japan Symposium on Society, Sciences, and Technology (TJASSST), 57-58.
増野陽一、中井亮佑、長谷川剛史、中村慶子、幸村基世、渋谷絵里、右山絵理、長沼毅、伊村智、岩月輝希、小林克己、小林憲正、三枝誠行、嶋田和人、白壁義久、高野淑識、高山健、俵裕子、橋本博文、森田洋平、保田浩志、山下雅道（2010）大線量エックス線および高エネルギーFeイオン照射に対する微生物の生残に関する研究、宇宙利用シンポジウムプロシーディング、26、143-146. [in Japanese with English Abstract]
長沼毅、中井亮佑、増野陽一、保田浩志（2009）微生物の放射線耐性における生理生化学的特性に関する研究、放射線医学総合研究所技術報告書、 226、100-101. [in Japanese]
増野陽一、中井亮佑、長谷川剛史、中村慶子、幸村基世、渋谷絵里、右山絵理、長沼毅、伊村智、岩月輝希、小林克己、小林憲正、三枝誠行、嶋田和人、白壁義久、高野淑識、高山健、俵裕子、橋本博文、森田洋平、保田浩志、山下雅道（2009）大線量X線およびFeイオン照射の照射に対する放射線耐性微生物の生残に関する予察的研究、宇宙利用シンポジウムプロシーディング、25、188-191. [in Japanese with English Abstract]
長沼毅、中井亮佑、長谷川剛史、中村慶子、増野陽一、幸村基世、保田浩志（2008）微生物の放射線耐性における生理生化学的特性に関する研究、放射線医学総合研究所技術報告書、214、87-88. [in Japanese]
増野陽一、許玉福、中井亮佑、長谷川剛史、中村慶子、幸村基世、長沼毅、伊村智、岩月輝希、小林憲正、三枝誠行、佐藤皓、嶋田和人、白壁義久、高野淑識、高山健、俵裕子、橋本博文、森田洋平、保田浩志、山下雅道、吉田英一（2008）大線量X線およびFeイオン照射の照射に対する放射線耐性微生物の生残に関する予察的研究、宇宙利用シンポジウムプロシーディング、24、314-317. [in Japanese with English Abstract]
長沼毅、伊村智、岩月輝希、川久保忠通、小林憲正、三枝誠行、佐藤皓、嶋田和人、白壁義久、野淑識、高山健、俵裕子、橋本博文、森田洋平、保田浩志、山下雅道、吉田英一、金子竹男、谷内俊範、佐藤康之、小川智也、藪下さやか、林徹、許玉福、中井亮佑 （2007）隕石・彗星内ハビタブルゾーンにおける大線量Ｘ線照射の影響評価に関する予察的研究、宇宙利用シンポジウムプロシーディング、23、 406-409. [in Japanese with English Abstract]
Naganuma T, Iwasaki S, Nakai R (2006) Human commensal Enterococcus as feed additive to prawn culture. Bulletin of Setouchi Field Science Center, Graduate School of Biosphere Science, Hiroshima University, 3, 41-47.

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