Multi-task learning for joint weakly-supervised segmentation and aortic arch anomaly classification in fetal cardiac MRI. Paula Ramirez, Alena Uus, Milou P.M. van Poppel, Irina Grigorescu, Johannes K. Steinweg, David F.A. Lloyd, Kuberan Pushparajah, Andrew P. King, Maria Deprez. Journal of Machine Learning for Biomedical Imaging, 2023. In press.
Effect of schizophrenia common variants on infant brain volumes: cross-sectional study in 207 term neonates in developing Human Connectome Project. Hai Le, Konstantina Dimitrakopoulou, Hamel Patel, Charles Curtis, Lucilio Cordero-Grande, A. David Edwards, Joseph Hajnal, Jacques-Donald Tournier, Maria Deprez, Harriet Cullen, Translational Psychiatry 13, 121 (2023).
Total and Regional Brain Volumes in Fetuses With Congenital Heart Disease. Cromb, D., Uus, A., Van Poppel, M.P.M., Steinweg, J.K., Bonthrone, A.F., Maggioni, A., Cawley, P., Egloff, A., Kyriakopolous, V., Matthew, J., Price, A., Pushparajah, K., Simpson, J., Razavi, R., DePrez, M., Edwards, D., Hajnal, J., Rutherford, M., Lloyd, D.F.A. and Counsell, S.J. (2023), J Magn Reson Imaging.
Assessment of normal pulmonary development using functional magnetic resonance imaging techniques. Carla L. Avena-Zampieri, Jana Hutter, Maria Deprez, Kelly Payette, Megan Hall, Alena Uus, Surabhi Nanda, Anna Milan, Paul T. Seed, Mary Rutherford, Anne Greenough, Lisa Story, American Journal of Obstetrics & Gynecology MFM, Volume 5, Issue 6, 2023.
Retrospective motion correction in foetal MRI for clinical applications: existing methods, applications and integration into clinical practice. Alena U. Uus, Alexia Egloff Collado, Thomas A. Roberts, Joseph V. Hajnal, Mary A. Rutherford, and Maria Deprez. The British Journal of Radiology 2023 96:1147
Automated 3D reconstruction of the fetal thorax in the standard atlas space from motion-corrupted MRI stacks for 21-36 weeks GA range. Uus AU, Grigorescu I, van Poppel MPM, Steinweg JK, Roberts TA, Rutherford MA, Hajnal JV, Lloyd DFA, Pushparajah K, Deprez M. Medical Image Analysis 2022
3D black blood cardiovascular magnetic resonance atlases of congenital aortic arch anomalies and the normal fetal heart: application to automated multi-label segmentation. Alena U. Uus, Milou P. M. van Poppel, Johannes K. Steinweg, Irina Grigorescu, Paula Ramirez Gilliland, Thomas A. Roberts, Alexia Egloff Collado, Mary A. Rutherford, Joseph V. Hajnal, David F. A. Lloyd, Kuberan Pushparajah, Maria Deprez, J Cardiovasc Magn Reson 24, 71 (2022).
Fetal MRI by Robust Deep Generative Prior Reconstruction and Diffeomorphic Registration. Lucilio Cordero-Grande , Juan Enrique Ortuño-Fisac , Alejandra Aguado del Hoyo , Alena Uus, Maria Deprez , Andrés Santos , Joseph V. Hajnal , and María J. Ledesma-Carbayo, in IEEE Transactions on Medical Imaging, vol. 42, no. 3, pp. 810-822, March 2023, doi: 10.1109/TMI.2022.3217725.
Predicting age and clinical risk from the neonatal connectome. Yassine Taoudi-Benchekroun, Daan Christiaens, Irina Grigorescu, Oliver Gale-Grant, Andreas Schuh, Maximilian Pietsch, Andrew Chew, Nicholas Harper, Shona Falconer, Tanya Poppe, Emer Hughes, Jana Hutter, Anthony N Price, J-Donald Tournier, Lucilio Cordero-Grande, Serena J Counsell, Daniel Rueckert, Tomoki Arichi, Joseph V Hajnal, A David Edwards, Maria Deprez, Dafnis Batalle, NeuroImage, Volume 257, 2022.
The Developing Human Connectome Project Neonatal Data Release. Edwards A. David, Rueckert Daniel, Smith Stephen M., Abo Seada Samy, Alansary Amir, Almalbis Jennifer, Allsop Joanna, Andersson Jesper, Arichi Tomoki, Arulkumaran Sophie, Bastiani Matteo, Batalle Dafnis, Baxter Luke, Bozek Jelena, Braithwaite Eleanor, Brandon Jacqueline, Carney Olivia, Chew Andrew, Christiaens Daan, Chung Raymond, Colford Kathleen, Cordero-Grande Lucilio, Counsell Serena J., Cullen Harriet, Cupitt John, Curtis Charles, Davidson Alice, Deprez Maria, Dillon Louise, Dimitrakopoulou Konstantina, Dimitrova Ralica, Duff Eugene, Falconer Shona, Farahibozorg Seyedeh-Rezvan, Fitzgibbon Sean P., Gao Jianliang, Gaspar Andreia, Harper Nicholas, Harrison Sam J., Hughes Emer J., Hutter Jana, Jenkinson Mark, Jbabdi Saad, Jones Emily, Karolis Vyacheslav, Kyriakopoulou Vanessa, Lenz Gregor, Makropoulos Antonios, Malik Shaihan, Mason Luke, Mortari Filippo, Nosarti Chiara, Nunes Rita G., O’Keeffe Camilla, O’Muircheartaigh Jonathan, Patel Hamel, Passerat-Palmbach Jonathan, Pietsch Maximillian, Price Anthony N., Robinson Emma C., Rutherford Mary A., Schuh Andreas, Sotiropoulos Stamatios, Steinweg Johannes, Teixeira Rui Pedro Azeredo Gomes, Tenev Tencho, Tournier Jacques-Donald, Tusor Nora, Uus Alena, Vecchiato Katy, Williams Logan Z. J., Wright Robert, Wurie Julia, Hajnal Joseph V. Frontiers in Neuroscience 16, 2022
Motion corrected fetal body magnetic resonance imaging provides reliable 3D lung volumes in normal and abnormal fetuses. Joseph Davidson, Alena Uus, Alexia Egloff, Milou van Poppel, Jacqueline Matthew, Johannes Steinweg, Maria Deprez, Michael Aertsen, Jan Deprest, Mary Rutherford. Prenat Diagn. 2022; 42(5): 628-635.
Harmonized Segmentation of Neonatal Brain MRI. Grigorescu Irina, Vanes Lucy, Uus Alena, Batalle Dafnis, Cordero-Grande Lucilio, Nosarti Chiara, Edwards A. David, Hajnal Joseph V., Modat Marc, Deprez Maria, Frontiers in Neuroscience 15, 2021
Multi-Channel 4D Parametrized Atlas of Macro- and Microstructural Neonatal Brain Development. Uus Alena, Grigorescu Irina, Pietsch Maximilian, Batalle Dafnis, Christiaens Daan, Hughes Emer, Hutter Jana, Cordero Grande Lucilio, Price Anthony N., Tournier Jacques-Donald, Rutherford Mary A., Counsell Serena J., Hajnal Joseph V., Edwards A. David, Deprez Maria, Frontiers in Neuroscience 15, 2021
Assessment of the fetal thymus gland: Comparing MRI-acquired thymus volumes with 2D ultrasound measurements. Rebecca Myers, Jana Hutter, Jacqueline Matthew, Tong Zhang, Alena Uus, David Lloyd, Alexia Egloff, Maria Deprez, Surabhi Nanda, Mary Rutherford, Lisa Story, European Journal of Obstetrics & Gynecology and Reproductive Biology, Volume 264, 2021.
Maternal depression during pregnancy alters infant subcortical and midbrain volumes. Vaheshta Sethna, Jasmine Siew, Maria Gudbrandsen, Inês Pote, Siying Wang, Eileen Daly, Maria Deprez, Carmine M. Pariante, Gertrude Seneviratne, Declan G.M. Murphy, Michael C. Craig, Grainne McAlonan, Journal of Affective Disorders, Volume 291, 2021.
Fetal body MRI and its application to fetal and neonatal treatment: an illustrative review. Joseph R Davidson, Alena Uus, Jacqueline Matthew, Alexia M Egloff, Maria Deprez, Iain Yardley, Prof Paolo De Coppi, Prof Anna David, Jim Carmichael, Prof Mary A Rutherford, The Lancet Child & Adolescent Health 5(6), 447-458, 2021
Antenatal thymus volumes in fetuses that delivered <32 weeks' gestation: An MRI pilot study. Lisa Story, Tong Zhang, Alena Uus, Jana Hutter, Alexia Egloff, Deena Gibbons, Alison Ho, Mudher Al-Adnani, Caroline L. Knight, Iakovos Theodoulou, Maria Deprez, Paul T. Seed, Rachel M. Tribe, Andrew H. Shennan, Mary Rutherford. Acta Obstet Gynecol Scand. 2021; 100: 1040–1050.
Scattered slice SHARD reconstruction for motion correction in multi-shell diffusion MRI. Daan Christiaens, Lucilio Cordero-Grande, Maximilian Pietsch, Jana Hutter, Anthony N. Price, Emer J. Hughes, Katy Vecchiato, Maria Deprez, A. David Edwards, Joseph V. Hajnal, J-Donald Tournier, NeuroImage, Volume 225, 2021
Fetal whole heart blood flow imaging using 4D cine MRI. Roberts, T. A., van Amerom, J. F. P., Uus, A., Lloyd, D. F. A., van Poppel, M. P. M., Price, A. N., Tournier, J-D., Mohanadass, C. A., Jackson, L. H., Malik, S. J., Pushparajah, K., Rutherford, M. A., Rezavi, R., Deprez, M. & Hajnal, J. V. Nature Communications 2020. Open access.
Higher order spherical harmonics reconstruction of fetal diffusion MRI with intensity correction. M Deprez, AN Price, D Christiaens, G Lockwood Estrin, L Cordero Grande, J Hutter, A Daducci, JD Tournier, MA Rutherford, S Counsell, M Bach Cuadra, JV Hajnal, IEEE Transactions on Medical Imaging, 2020; pdf
Deformable Slice-to-Volume Registration for Motion Correction in Fetal Body MRI. Alena Uus, Tong Zhang, Laurence Jackson, Mary Rutherford, Joseph V. Hajnal, Maria Deprez. IEEE Transaction on Medical Imaging 2020. pdf
Assessment of radial glia in the frontal lobe of fetuses with Down syndrome. Ana A. Baburamani, Regina T. Vontell, Alena Uus, Maximilian Pietsch, Prachi A. Patkee, Jo Wyatt-Ashmead, Evonne C. Chin-Smith, Veena G. Supramaniam, J. Donald Tournier, Maria Deprez, Mary A. Rutherford. Acta neuropathol commun 8, 141, 2020.
Three-dimensional visualisation of the fetal heart using prenatal MRI with motion-corrected slice-volume registration: a prospective, single-centre cohort study. David F A Lloyd, Kuberan Pushparajah, John M Simpson, Joshua F P van Amerom, Milou P M van Poppel, Alexander Schulz, Bernard Kainz, Maria Deprez, Maelene Lohezic, Joanna Allsop, Sujeev Mathur, Hannah Bellsham-Revell, Trisha Vigneswaran, Marietta Charakida, Owen Miller, Vita Zidere, Gurleen Sharland, Mary Rutherford, Joseph V Hajnal, Reza Razavi. The Lancet, Volume 393, Issue 10181, 2019, Pages 1619-1627. open access
Fetal whole‐heart 4D imaging using motion‐corrected multi‐planar real‐time MRI. van Amerom, JFP, Lloyd, DFA, Deprez, M, et al. Magn Reson Med. 2019; 82: 1055– 1072. pdf
Quantitative assessment of myelination patterns in preterm neonates using T2-weighted MRI. Siying Wang, Christian Ledig, Joseph V. Hajnal, Serena J. Counsell, Julia A. Schnabel & Maria Deprez. Scientific Reports volume 9, Article number: 12938 (2019). open access
Distortion correction in fetal EPI using non-rigid registration with a Laplacian constraint. M Kuklisova-Murgasova, G Lockwood-Estrin , RG Nunes, SJ Malik, MA Rutherford, D Rueckert, JV Hajnal. IEEE Transactions on Medical Imaging, 2018. pdf
The Developing Human Connectome Project: a Minimal Processing Pipeline for Neonatal Cortical Surface Reconstruction. A Makropoulos, EC Robinson, A Schuh, R Wright, S Fitzgibbon, J Bozek, SJ Counsell, J Steinweg, K Vecchiato, J Passerat-Palmbach, G Lenz, F Mortari, T Tenev, EP Duff, M Bastiani, L Cordero Grande, EJ Hughes, N Tusor, JD Tournier, J Hutter, AN Price, RPAG Teixeira, M Murgasova, S Victor, CJ Kelly, MA Rutherford, SM Smith, AD Edwards, JV Hajnal, M Jenkinson, D Rueckert. NeuroImage 173, 2018. pdf
Segmentation of Myelin-like Signals on Clinical MR Images for Assessment of Brain Development in Preterm Infants. S Wang, M Kuklisova-Murgasova, C Ledig, JV Hajnal, SJ Counsell, JA Schnabel. Bioarxiv, 2018. doi
An efficient sequence for fetal brain imaging at 3T with enhanced T1 contrast and motion robustness. G Ferrazzi, AN Price, RPAG Teixeira, L Cordero-Grande, J Hutter, A Gomes, F Padormo, E Hughes, T Schneider, M Rutherford, M Kuklisova Murgasova, JV Hajnal. Magnetic Resonance in Medicine 2017. pdf
Impaired development of the cerebral cortex in infants with congenital heart disease is correlated to reduced cerebral oxygen delivery. CJ Kelly, A Makropoulos, L Cordero-Grande, J Hutter, A Price, E Hughes, M Murgasova, RPAG Teixeira, JK Steinweg, S Kulkarni, L Rahman, H Zhang, DC Alexander, K Pushparajah, D Rueckert, JV Hajnal, J Simpson, AD Edwards, MA Rutherford, SJ Counsell, Scientific Reports 7, Article number: 15088 (2017)
Fetal cardiac cine imaging using highly accelerated dynamic MRI with retrospective motion correction and outlier rejection. van Amerom JFP, Lloyd DFA, Price AN, Kuklisova Murgasova M, Aljabar P, Malik SJ, Lohezic M, Rutherford MA, Pushparajah K, Razavi R, Hajnal JV. Magnetic resonance in Medcine 2017.
PVR: Patch-to-Volume Reconstruction for Large Area Motion Correction of Fetal MRI. Alansary A, Rajchl M, McDonagh SG, Murgasova M, Damodaram M, Lloyd DFA, Davidson A, Rutherford M, Hajnal JV, Rueckert D, Kainz B. IEEE Transactions on Medical Imaging, 2017.
Mother-infant interactions and regional brain volumes in infancy: an MRI study. V Sethna, I Pote, S Wang, M Gudbrandsen, A Blasi, C McCusker, E Daly, E Perry, KPH Adams, M Kuklisova-Murgasova, P Busuulwa, S Lloyd-Fox, L Murray, MH Johnson, SCR Williams, DGM Murphy, M Craig, GM McAlonan. Brain Structure and Function, 2016.
An exploration of the potential utility of fetal cardiovascular MRI as an adjunct to fetal echocardiography. DFA Lloyd, JFP Amerom, K Pushparajah, JM Simpson, V Zidere, O Miller, G Sharland, J Allsop, M Fox, M Lohezic, M Murgasova, C Malamateniou, J V Hajnal, M Rutherford, R Razavi. Prenatal Diagnosis 36, 2016.
Fast Volume Reconstruction from Motion Corrupted Stacks of 2D Slices. Bernhard Kainz, Markus Steinberger, Wolfgang Wein, Maria Kuklisova-Murgasova, Christina Malamateniou, Kevin Keraudren, Thomas Torsney-Weir, Mary Rutherford, Paul Aljabar, Joseph V. Hajnal, and Daniel Rueckert. IEEE Transactions on Medical Imaging, 2015.
Evaluation of automatic neonatal brain segmentation algorithms: The NeoBrainS12 challenge. I Išgum, MJNL Benders, B Avants, MJ Cardoso, SJ Counsell, EF Gomez, L Gui, PS Hűppi, KJ Kersbergen, A Makropoulos, A Melbourne, P Moeskops, CP Mol, M Kuklisova-Murgasova, D Rueckert, JA Schnabel, V Srhoj-Egekher, J Wu, S Wang, LS de Vries, MA Viergever. Medical Image Analysis 20(1), 2015.
Resting state fMRI in the moving fetus: A robust framework for motion, bias field and spin history correction. G Ferrazzi, M Kuklisova Murgasova, T Arichi, C Malamateniou, MJ Fox, A Makropoulos, JM Allsop, M Rutherford, S Malik, P Aljabar JV Hajnal. NeuroImage 2014. In Press.
Automated Fetal Brain Segmentation from 2D MRI Slices for Motion Correction. K Keraudren, M Kuklisova-Murgasova, V Kyriakopoulou, C Malamateniou, MA Rutherford, B Kainz, JV Hajnal, D Rueckert, D. NeuroImage, 2014. In Press.
A 4D neonatal head model for diffuse optical imaging of pre-term to term infants. S Brigadoi, P Aljabar, M Kuklisova-Murgasova, SR Arridge, RJ Cooper NeuroImage 100, 385-394, 2014.
Registration of 3D fetal neurosonography and MRI. M Kuklisova-Murgasova, A Cifor, R Napolitano, A Papageorghiou, G Quaghebeur, MA Rutherford, JV Hajnal, JA Noble, JA Schnabel. Medical Image Analysis 17(8), 2013. link(open access)
Reconstruction of fetal brain MRI with intensity matching and complete outlier removal. M Kuklisova-Murgasova, G Quaghebeur, MA Rutherford, JV Hajnal, JA Schanbel. Medical Image Analysis 16(8), 2012. link(open access)
Simultaneous Multiscale Registration using Large Deformation Diffeomorphic Metric Mapping. L Risser, FX Vialard, R Wolz, M Murgasova, D Holm, D Rueckert, ADNI. IEEE Transactions on Medical Imaging 30(10), 2011
A dynamic 4D probabilistic atlas of the developing brain. M Kuklisova-Murgasova, P Aljabar, L Srinivasan, SJ Counsell, V Doria, A Serag, IS Gousias, JP Boardman, MA Rutherford, AD Edwards, JV Hajnal, D Rueckert. NeuroImage 54(4), 2011.
Emergence of resting state networks in the preterm human brain. V Doria, CF Beckmann, T Arichi, N Merchant, M Groppo, FE Turkheimer, SJ Counsell, M Murgasova, P Aljabar, RG Nunes, DJ Larkman, G Rees AD Edwards. Proceedings of National Academy of Sciences, 107(46), 2010.
Assessment of brain growth in early childhood using deformation based morphometry. P Aljabar, KK Bhatia, M Murgasova, JV Hajnal, JP Boardman, L Srinivasan, MA Rutherford, LE Dyet, AD Edwards and D Rueckert. NeuroImage, 39(1), 2008.
Segmentation of Brain MRI in Young Children. M Murgasova, LE Dyet, AD Edwards, MA Rutherford, JV Hajnal, D Rueckert. Academic Radiology, 14(11), 2007
Towards Automatic Risk Prediction of Coarctation of the Aorta from Fetal CMR Using Atlas-Based Segmentation and Statistical Shape Modelling. Paula Ramirez, Uxio Hermida, Alena Uus, Milou P. M. van Poppel, Irina Grigorescu, Johannes K. Steinweg, David F. A. Lloyd, Kuberan Pushparajah, Adelaide de Vecchi, Andrew King, Pablo Lamata & Maria Deprez, Perinatal, Preterm and Paediatric Image Analysis. PIPPI 2023. Lecture Notes in Computer Science, vol 14246. Springer, Cham.
A Deep Learning Approach for Segmenting the Subplate and Proliferative Zones in Fetal Brain MRI. Helena S. Sousa, Abi Fukami-Gartner, Alena U. Uus, Vanessa Kyriakopoulou, Brigita Ziukaite, Isa Anzak, Jonathan O’Muircheartaigh, Joseph V. Hajnal, J-Donald Tournier, Alexander Hammers, Mary A. Rutherford & Maria Deprez, Perinatal, Preterm and Paediatric Image Analysis. PIPPI 2023. Lecture Notes in Computer Science, vol 14246. Springer, Cham.
Quantitative T2 Relaxometry in Fetal Brain: Validation Using Modified FaBiaN Fetal Brain MRI Simulator. Suryava Bhattacharya, Anthony Price, Alena Uus, Helena S. Sousa, Massimo Marenzana, Kathleen Colford, Peter Murkin, Maggie Lee, Lucilio Cordero-Grande, Rui Pedro Azeredo Gomes Teixeira, Shaihan J. Malik & Maria Deprez, Perinatal, Preterm and Paediatric Image Analysis. PIPPI 2023. Lecture Notes in Computer Science, vol 14246. Springer, Cham.
Combined Quantitative T2* Map and Structural T2-Weighted Tissue-Specific Analysis for Fetal Brain MRI: Pilot Automated Pipeline. Alena U. Uus, Megan Hall, Kelly Payette, Joseph V. Hajnal, Maria Deprez, Mary A. Rutherford, Jana Hutter & Lisa Story Perinatal, Preterm and Paediatric Image Analysis. PIPPI 2023. Lecture Notes in Computer Science, vol 14246. Springer, Cham.
An Automated Pipeline for Quantitative T2* Fetal Body MRI and Segmentation at Low Field. Kelly Payette, Alena Uus, Jordina Aviles Verdera, Carla Avena Zampieri, Megan Hall, Lisa Story, Maria Deprez, Mary A. Rutherford, Joseph V. Hajnal, Sebastien Ourselin, Raphael Tomi-Tricot & Jana Hutter. Medical Image Computing and Computer Assisted Intervention – MICCAI 2023. MICCAI 2023. Lecture Notes in Computer Science, vol 14226. Springer, Cham.
Automated Multi-class Fetal Cardiac Vessel Segmentation in Aortic Arch Anomalies Using T2-Weighted 3D Fetal MRI. Paula Ramirez Gilliland, Alena Uus, Milou P. M. van Poppel, Irina Grigorescu, Johannes K. Steinweg, David F. A. Lloyd, Kuberan Pushparajah, Andrew P. King & Maria Deprez Perinatal, Preterm and Paediatric Image Analysis. PIPPI 2022. Lecture Notes in Computer Science, vol 13575. Springer, Cham.
Segmentation of Periventricular White Matter in Neonatal Brain MRI: Analysis of Brain Maturation in Term and Preterm Cohorts. Alena U. Uus, Mohammad-Usamah Ayub, Abi Gartner, Vanessa Kyriakopoulou, Maximilian Pietsch, Irina Grigorescu, Daan Christiaens, Jana Hutter, Lucilio Cordero Grande, Anthony Price, Dafnis Batalle, Serena Counsell, Joseph V. Hajnal, A. David Edwards, Mary A. Rutherford & Maria Deprez Perinatal, Preterm and Paediatric Image Analysis. PIPPI 2022. Lecture Notes in Computer Science, vol 13575. Springer, Cham.
Attention-Driven Multi-channel Deformable Registration of Structural and Microstructural Neonatal Data. Irina Grigorescu, Alena Uus, Daan Christiaens, Lucilio Cordero-Grande, Jana Hutter, Dafnis Batalle, A. David Edwards, Joseph V. Hajnal, Marc Modat & Maria Deprez Perinatal, Preterm and Paediatric Image Analysis. PIPPI 2022. Lecture Notes in Computer Science, vol 13575. Springer, Cham.
Uncertainty-Aware Deep Learning Based Deformable Registration.Uncertainty for Safe Utilization of Machine Learning in Medical Imaging, and Perinatal Imaging, Placental and Preterm Image Analysis. Irina Grigorescu, Alena Uus, Daan Christiaens, Lucilio Cordero-Grande, Jana Hutter, Dafnis Batalle, A. David Edwards, Joseph V. Hajnal, Marc Modat & Maria Deprez . UNSURE PIPPI 2021. Lecture Notes in Computer Science, vol 12959. Springer, Cham.
Spatio-Temporal Atlas of Normal Fetal Craniofacial Feature Development and CNN-Based Ocular Biometry for Motion-Corrected Fetal MRI .Alena Uus, Jacqueline Matthew, Irina Grigorescu, Samuel Jupp, Lucilio Cordero Grande, Anthony Price, Emer Hughes, Prachi Patkee, Vanessa Kyriakopoulou, Robert Wright, Thomas Roberts, Jana Hutter, Maximilian Pietsch, Joseph V. Hajnal, A. David Edwards, Mary Ann Rutherford & Maria Deprez Uncertainty for Safe Utilization of Machine Learning in Medical Imaging, and Perinatal Imaging, Placental and Preterm Image Analysis. UNSURE PIPPI 2021. Lecture Notes in Computer Science(), vol 12959. Springer, Cham.
Multi-channel Registration for Diffusion MRI: Longitudinal Analysis for the Neonatal Brain. Alena Uus, Maximilian Pietsch, Irina Grigorescu, Daan Christiaens, Jacques-Donald Tournier, Lucilio Cordero Grande, Jana Hutter, David Edwards, Joseph Hajnal, Maria Deprez. Biomedical Image Registration. WBIR 2020. Lecture Notes in Computer Science, vol 12120. Springer, Cham.
Diffusion Tensor Driven Image Registration: A Deep Learning Approach. Biomedical Image Registration. Irina Grigorescu, Alena Uus, Daan Christiaens, Lucilio Cordero-Grande, Jana Hutter, A. David Edwards, Joseph V. Hajnal, Marc Modat, Maria Deprez. WBIR 2020. Lecture Notes in Computer Science, vol 12120. Springer, Cham.
Interpretable Convolutional Neural Networks for Preterm Birth Classification. Irina Grigorescu, Lucilio Cordero-Grande, A David Edwards, Jo Hajnal, Marc Modat, Maria Deprez. Medical Imaging with Deep Learning 2019. pdf
Investigating Image Registration Impact on Preterm Birth Classification: An Interpretable Deep Learning Approach. Grigorescu I., Cordero-Grande L., David Edwards A., Hajnal J.V., Modat M., Deprez M. (2019) In: Wang Q. et al. (eds) Smart Ultrasound Imaging and Perinatal, Preterm and Paediatric Image Analysis. PIPPI 2019, SUSI 2019. Lecture Notes in Computer Science, vol 11798. Springer, Cham
Self-supervised Recurrent Neural Network for 4D Abdominal and In-utero MR Imaging. Tong Zhang, Laurence H Jackson, Alena Uus, James R Clough, Lisa Story, Mary A Rutherford, Joseph V Hajnal, Maria Deprez. In: Knoll F., Maier A., Rueckert D., Ye J. (eds) Machine Learning for Medical Image Reconstruction. MLMIR 2019. Lecture Notes in Computer Science, vol 11905. Springer, Cham. pdf
A Novel Spatial-Angular Domain Regularisation Approach for Restoration of Diffusion MRI. Mella, A., Daducci, A., Orlandi, G., Thiran, JP., Deprez, M., Bach Cuadra, M. (2019). Computational Diffusion MRI. MICCAI 2019. Mathematics and Visualization. Springer, Cham.
Distortion correction in fetal EPI using non-rigid registration with Laplacian constraint. M Kuklisova-Murgasova, G Lockwood-Estrin , MA Rutherford, D Rueckert, JV Hajnal. ISBI, Prague, 2016.
Regression analysis for assessment of myelination status in preterm brains with magnetic resonance imaging. S Wang, M Kuklisova-Murgasova, JV Hajnal, C Ledig, C. & Schnabel. ISBI, Prague, 2016.
An atlas-based method for neonatal MR brain tissue segmentation. S Wang, M Kuklisova-Murgasova, JA Schnabel. MICCAI Grand Challenge: Neonatal Brain Segmentation, Nice, 2012
Registration of 3D fetal brain US and MRI. M Kuklisova-Murgasova, A Cifor, R Napolitano, A Papageorghiou, G Quaghebeur, JA Noble, JA Schnabel. MICCAI, Nice, 2012.
Towards 3D registration of fetal brain MRI and ultrasound. M Kuklisova-Murgasova, G Quaghebeur, JV Hajnal, JA Noble, JA Schnabel. ISBI, Barcelona, 2012.
3D Reconstruction of Fetal Brain MR Imaging. M Kuklisova-Murgasova, G Quaghebeur, JA Schnabel. ASNR 50th Annual Meeting, New York, 2012.
Unified framework for superresolution reconstruction of 3D fetal brain MR images from 2D slices with intensity correction and outlier rejection. M Murgasova, G Quaghebeur, JV Hajnal, JA Schnabel. MICCAI Workshop on Image Analysis of Human Brain Development 2011.
Brain Extraction Methods for Neonates. Z Wu, M Murgasova, A Buchmann, M von Rhein, JA Schnabel. MIUA 2011.
Combining morphological information in a manifold learning framework: Application to neonatal MRI. P Aljabar, R Wolz, L Srinivasan, S Counsell, JP Boardman, M Murgasova, V Doria, M Rutherford, AD Edwards, JV Hajnal and D Rueckert. MICCAI, 2010.
Simultaneous reconstruction of 4-D myocardial motion from both tagged and untagged MR images Using Nonrigid Image Registration. W Shi, M Murgasova, P Edwards, D Rueckert. MIAR, 2010.
Large Diffeomorphic Registration using Fine and Coarse Strategies. Application to the brain growth characterization. L Risser, FX Vialard, M Murgasova, D Holm, D Rueckert. WBIR 2010.
Construction of a dynamic 4D probabilistic atlas for the developing brain. M Murgasova, L Srinivasan, IS Gousias, P Aljabar, JV Hajnal, AD Edwards and D Rueckert. ISBI, 2010.
A spatio-temporaral atlas of the growing brain for fMRI studies. M Murgasova, V Doria, L Srinivasan, P Aljabar, AD Edwards, and D Rueckert. MICCAI Workshop on Image Analysis for the Developing Brain 2009.
Construction of a dynamic 4D probabilistic atlas for the developing brain. M Murgasova, P Aljabar, L Srinivasan, AD Edwards, JV Hajnal, D Rueckert. MIUA 2009.
Robust segmentation of brain structures in MRI. M Murgasova, JV Hajnal, AD Edwards, D Rueckert. ISBI 2009.
Template-based bias correction: Application to paediatric brain MRI. M Murgasova, JV Hajnal, S Counsell, AD Edwards, D Rueckert. ISMRM 2009.
Robust Segmentation of Brain MRI Using Combination of Registration and EM-based Methods. M Murgasova, L Dyet, D Edwards, M Rutherford, JV Hajnal, D Rueckert. SCCG 2007.
Groupwise Combined Segmentation and Registration for Atlas Construction. KK Bhatia, P Aljabar, JP Boardman, L Srinivasan, M Murgasova, SJ Counsell, MA Rutherford, JV Hajnal, AD Edwards, D Rueckert. MICCAI 2007.
Quantifying brain development in early childhood using segmentation and registration. P Aljabar, KK Bhatia, M Murgasova, JV Hajnal, J Boardman, L Srinivasan, MA Rutherford, LE Dyet, AD Edwards, D Rueckert. SPIE Medical Imaging 2007.
Segmentation of Brain MRI in Young Children. M Murgasova, L Dyet, AD Edwards, MA Rutherford, JV Hajnal, Daniel Rueckert. MICCAI 2006.
Construction of Non-Uniform Basis Functions for Spline Curves and Surfaces. M Kuklisova. WSCG 2000.
Spline-blended surfaces. M Kuklisova. CESCG 1999.