Publications
Book Chapters
2023
2. Machado, C.B., Perez, M.F. Phylogeography for Neotropical Species Conservation: Lineages Through Time and Space. In: Galetti Jr., P.M. (eds) Conservation Genetics in the Neotropics. Springer, Cham. https://doi.org/10.1007/978-3-031-34854-9_6.
1. Perez, M.F., Toma, G.A., Souza, F.H.S., Ferreira, P.N., Ráb, P., Cioffi, M.B. (2023). Integrating Genomic and Cytogenetic Data to Study the Evolutionary History of Arapaimas and Arowanas in the Neotropics. In: Galetti Jr., P.M. (eds) Conservation Genetics in the Neotropics. Springer, Cham. https://doi.org/10.1007/978-3-031-34854-9_21.
Peer-Reviewed Articles
2024
29. Barrado, M.R., Villaverde, T., PEREZ, M.F., Sanmartín, I., Riina, R. The sweet tabaiba or there and back again: phylogeographic history of the Macaronesian Euphorbia balsamifera. Annals of Botany: mcae001.
2023
28. Lauterbur, M.E., Cavassim, M.I.A., Gladstein, A.L., Gower, G., Pope, N.S., Tsambos, G., Adrion, J., Belsare, S., Biddanda, A., Caudill, V., Cury, J., Echevarria, I., Haller, B.C., Hasan, A.R., Huang, X., Iasi, L.N.M., Noskova, E., Obšteter, J., Pavinato, V.A. C., Pearson, A., Peede, D., PEREZ, M.F., Rodrigues, M.F., Smith, C.C.R., Spence, J.P., Teterina, A., Tittes, S., Unneberg, P., Vazquez, J.M., Waples, R.K., Wohns, A.W., Wong, Y., Baumdicker, F., Cartwright, R.A., Gorjanc, G., Gutenkunst, R.N., Kelleher, J., Kern, A.D., Ragsdale, A.P., Ralph, P.L., Schrider, D.R., Gronau, I. Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations. eLife: 12, RP84874.
27. Romeiro-Brito, M.; Khan, G.; PEREZ, M. F.; Zappi, D.C.; Taylor, N.P.; Olsthoorn G.; Franco, F.F.; Moraes, E.M. Revisiting phylogeny, systematics, and biogeography of a Pleistocene radiation. American Journal of Botany, e16134.
2022
26. Kirschner, P.; PEREZ, M. F.; Záveská, E.; Sanmartin, I.; Marquer, L.; Schlick-Steiner, B.; Alvarez, N.; the STEPPE Consortium; Steiner, F.M.; Schönswetter, P. Congruent evolutionary responses of European steppe biota to late Quaternary climate change: insights from convolutional neural network based demographic modeling. Nature Communications 13: 1921.
25. Ferreira, P. H.; Souza, F. H. D.; Moraes, R. L. R.; PEREZ, M. F.; Sassi, F. D. M.; Viana, P. F.; Feldberg, E.; Ezaz; T.; Liehr, T.; Bertollo, L. A.; Cioffi, M. B. The genetic differentiation of Pyrrhulina (Teleostei, Characiformes) species is likely influenced by both geographical distribution and chromosomal rearrangements. Frontiers in Genetics.
24. Souza, F. H. D.; Sassi, F. D. M.; Ferreira, P. H.; Bertollo, L. A.; Ezaz; T.; Liehr, T.; PEREZ, M. F.; Cioffi, M. B. Integrating Cytogenetics and Population Genomics: Allopatry and Neo-Sex Chromosomes May Have Shaped the Genetic Divergence in the Erythrinus erythrinus Species Complex (Teleostei, Characiformes). Biology 11(2): 315.
23. PEREZ, M. F. ; Bonatelli, I. A. S.; Romeiro-Brito, M.; Franco, F. F.; Taylor, N. P. ; Zappi, D. C. ; Moraes, E. M. Coalescent-based species delimitation meets deep learning: Insights from a highly fragmented cactus system. Molecular Ecology Resources 22(3): 1016-1028.
2021
22. Sember A.; Nguyen P.; PEREZ M.F.; Altmanová M.; Ráb P.; de Bello Cioffi M. Multiple sex chromosomes in teleost fishes from a cytogenetic perspective: state of the art and future challenges. Phil Trans R Soc B. 376: 20200098.
21. Fegies A.C.F.; Carmignotto, A.P.; PEREZ M.F.; Guilardi, M.D.; Lessinger, A.C. Molecular phylogeny of Cryptonanus (Didelphidae: Thylamyini): evidence for a recent and complex diversification in South American open biomes. Molecular Phylogenetics and Evolution 162: 107213.
20. Sassi F. M. C.; PEREZ M.F.; Oliveira V.; Deon D.A.; Souza F.; Ferreira P.; Oliveira E.; Hatanaka T.; Liehr T.; Bertollo L.A.C.; de Bello Cioffi M. High genetic diversity despite conserved karyotype organization in the giant trahiras from genus Hoplias (Characiformes, Erythrinidae). Genes 12: 252.
19. Sassi, F. M. C.; PEREZ, M. F. ; Silva, M. A. ; Kavalco, K. F. ; Pasa, R. Can geometric morphometrics work for species clusterization on the armored catfish Hypostomus (Siluriformes, Loricariidae)? Biodiversity Journal, 2021,12 (4): 147–153.
2020
18. Oliveira, E.A.; Sassi, F.M.C.; PEREZ, M.F.; Bertollo, L.A.C.; Ráb, P.; Ezaz, T.; Hatanaka, T.; Viana, P.F.; Feldberg, E.; Oliveira, E.H.C.; Cioffi, M.B. Comparative cytogenetic survey of the giant bonytongue Arapaima fish (Osteoglossiformes: Arapaimidae), across different Amazonian and Tocantins/Araguaia River basins. Neotropical Ichthyology, 18(4), e200055.
17. Oliveira, E.A., PEREZ, M.F., Bertollo, L.A.C., Gestich, C.C., Ráb, P., Ezaz, T., Souza, F.H.S., Viana, P., Feldberg, E., Oliveira, E.H.C. and Cioffi, M.B. Historical demography and climate driven distributional changes in a widespread Neotropical freshwater species with high economic importance. Ecography, 43: 1291-1304.
2019
16. Souza, F.H.S.; PEREZ, M.F.; Bertollo, L.A.C.; Oliveira, E.A.; Lavoué, S.; Gestich, C.C.; Ráb, P.; Ezaz, T.; Liehr, T.; Viana, P.F.; Feldberg, E.; Cioffi, M.B. Interspecific Genetic Differences and Historical Demography in South American Arowanas (Osteoglossiformes, Osteoglossidae, Osteoglossum). Genes 10: 693.
15. Cioffi, M.B.; Ráb, P.; Ezaz, T.; Bertollo, L.A.C.; Lavoué, S.; Oliveira, E.A.; Sember, A.; Molina, W.F.; Souza, F.H.S.; Majtánová, Z.; Liehr, T.; Al-Rikabi, A.B.H.; Yano, C.F.; Viana, P.; Feldberg, E.; Unmack, P.; Hatanaka, T.; Tanomtong, A.; PEREZ, M.F. Deciphering the Evolutionary History of Arowana Fishes (Teleostei, Osteoglossiformes, Osteoglossidae): Insight from Comparative Cytogenomics. International Journal of Molecular Science 20: 4296.
14. Souza, A. S. D., Dias-Júnior, E. A., PEREZ, M. F., Cioffi, M. D. B., Bertollo, L. A. C., Garcia-Machado, E., Valinotto, M. N. S. ; P. M., Galetti ; Molina, W. F. Phylogeography and historical demography of two sympatric Atlantic snappers: Lutjanus analis and L. jocu. Frontiers in Marine Science 6:545.
2018
13. PEREZ, M. F. ; Franco, F. F.; Bombonato, J.R.; Bonatelli, I.A.S.; Khan, G.; Romeiro-Brito, M.; Fegies, A.C.; Ribeiro, P.M.; Silva, G.A.R.; Moraes, E. M. Assessing population structure in face of isolation by distance: are we neglecting the problem? Diversity and Distribution 24:1883–1889.
12. Khan, G. ; Ribeiro, P. M. ; Bonatelli, I. A. S. ; PEREZ, M. F. ; Franco, F. F.; Moraes, E. M. Weak population structure and no genetic erosion in Pilosocereus aureispinus: a microendemic and threatened cactus species from eastern Brazil. PlosOne. PlosOne 13(4):e0195475.
2017
11. Franco, F. F. ; Jojima, C. L.; PEREZ, M. F. ; Zappi, D. C.; Taylor, N.; Moraes, E. M. The xeric side of the Brazilian Atlantic Forest: the forces shaping phylogeographic structure of cacti. Ecology and Evolution: 7:9281–9293.
10. Khan, G. ; Godoy, M. O.; Franco, F. F.; PEREZ, M. F. ; Taylor, N. P.; Zappi, D. C.; Machado, M. C.; Moraes, E. M. Extreme population subdivision or cryptic speciation in the cactus Pilosocereus jauruensis? A taxonomic challenge posed by a naturally fragmented system. Systematics and Biodiversity 16(2): 188-199.
9.Miño, C. I., Avelar, L. H., Silva, F. M., PEREZ, M. F., Menezes, L. F., Del Lama, S. N. Genetic differentiation and historical demography of wood stork populations in Brazilian wetlands: Implications for the conservation of the species and associated ecosystems. Aquatic Conservation: Marine and Freshwater Ecosystems 27: 1313– 1324.
2016
8. PEREZ, M. F. ; Bonatelli, IAS; Moraes, EM; Carstens, BC. Model-based analysis supports interglacial refugia over long dispersal events in the diversification of two South American cactus species. Heredity, 116: 550-557.
7. PEREZ, M. F. ; Carstens, BC; Rodrigues, GL; Moraes, EM. Anonymous nuclear markers reveal taxonomical incongruences and long- term disjunction in a cactus species complex with continental-island distribution in South America. Molecular Phylogenetics and Evolution, 95: 11-19.
6. PEREZ, M. F. ; Carstens, BC; Rodrigues, GL; Moraes, EM. Anonymous nuclear markers data supporting species tree phylogeny and divergence time estimates in a cactus species complex in South America. Data in Brief, 6: 456–460.
2015
5. Peres, E. A. ; Sobral-Souza, t. ; PEREZ, M. F. ; Bonatelli, I. A. ; Silva, D. P. ; Silva, M. J. ; Solferini, V. N. Pleistocene niche stability and lineages diversification in the subtropical spider Araneus omnicolor (Araneidae). Plos One, 10: e0121543.
4. Garrick, R. C. ; Bonatelli, I. A. ; Hyseni, C. ; Morales-Garcia, A. E. ; Pelletier, T. A. ; PEREZ M. F. ; Rice, E. ; Satler, J. D. ; Symula, R. E. ; Thomé, M. T. C. ; Carstens, B. C. . The evolution of phylogeographic datasets. Molecular Ecology, 25: 1164-1171.
2014
3. Bonatelli, I. A. S.; PEREZ, M. F.; Peterson, A. T.; Taylor, N. P.; Zappi, D. C.; Machado, M. C.; Koch, I.; Pires, A. H. C.; Moraes, E. M. Interglacial microrefugia and diversification of a cactus species complex: phylogeography and palaeodistributional reconstructions for Pilosocereus aurisetus and allies. Molecular Ecology, 23: 3044–3063.
2012
2. Moraes, E. M. ; PEREZ, M. F. ; Téo, M. F. ; Zappi, D. C. ; Taylor, N. P. ; Machado, M. C. Cross-species amplification of microsatellites reveals incongruence in the molecular variation and taxonomic limits of the Pilosocereus aurisetus group (Cactaceae). Genetica ('s- Gravenhage), 140: 277-285.
2011
1. PEREZ, M. F. ; Téo, M. F. ; Zappi, D. C. ; Taylor, N. P. ; Moraes, E. M. . Isolation, characterization, and cross-species amplification of polymorphic microsatellite markers for Pilosocereus machrisii (Cactaceae). American Journal of Botany, 98: e204-e206.