Recent Publications

Here are some recent student publications with graduate students being denoted by the # symbol (also see the Papers tab where student coauthors are indicated by an asterisk):

  • M. Ferrari#, A. Cook, A. Houlihan, R. Rouleau, N. Seeman, G. Pangborn, J. Ellis-Monaghan, “Design formalism for DNA self-assembly of polyhedral skeletons using rigid tiles”, The Journal of Mathematical Chemistry, 56, no. 5 (2018) 1365-1392.
  • J. Ellis-Monaghan, G. Pangborn, N.C. Seeman, S. Blakeley, C. Disher, M. Falcigno, B.Healy, A. Morse#, B.Singh, M. Westland, “Design tools for Reporter Strands and DNA Origami Scaffold Strands”, Theoretical Computer Science, 671 no. 6 (2017) 69-78.
  • J. Ellis-Monaghan, A. McDowell#, I. Moffatt, G. Pangborn, “DNA origami and the complexity of Eulerian circuits with turning costs”, Natural Computing, 14 no. 3 (2015) 491-503.
  • J. Ellis-Monaghan, G. Pangborn, L. Beaudin, D. Miller, N. Bruno, A. Hashimoto, Minimal Tile and Bond-Edge Types for Self-Assembling DNA Graphs, in Discrete and Topological Models in Molecular Biology, N. Jonoska & M. Saito, eds. Natural Computing Series, Springer, 2014.
  • T. Dickerson, J. Girard, B. Goodhue, D. Koch, A. Parent, M. Spuches, “Self-Assembly Strategies in the Octet Truss”, submitted. Co-advised with G. Pangborn.
  • A. Morse#, W. Adkisson, J. Greene, D. Perry, B. Smith, G. Pangborn, J. Ellis-Monaghan, “DNA Origami and Unknotted A-trails in Torus Graphs”, submitted.
  • R. Hammond, “Graph theory and its importance to conservation”, Rose-Hulman Undergraduate Mathematics Journal, 15, no 1, spring 2014.
  • Tyler Hotte, Miranda LaRocque, “Design Techniques for the DNA Cubic Lattice”, American Journal of Undergraduate Research.
  • Co-advised with G. Pangborn
  • James Coolidge, Kevin O’Brien, “Utilizing the Octet Truss in the Design of Lateral Transfer Retroreflectors”, NASA-Goddard technical report for the ATLAS project.
  • Jake Girard, Andrew Gilbert, Dan Lewis, Mary Spuches, “Design optimization for DNA nanostructures”, American Journal of Undergraduate Research, 10, no 1, 2011. Co-advised with G. Pangborn.
  • Eva Ellis-Monaghan, “Phase transitions in the Ising Model”, Rose-Hulman Undergraduate Mathematics Journal, 11, no 1, fall 2010.
  • L. Beaudin*, J. Ellis-Monaghan, G. Pangborn, R. Shrock, “A little statistical mechanics for the graph theorist,” Discrete Mathematics, 310, no. 13-14 (2010) 2037-2053.
  • J. Kaptcianos, “A graph theory approach to DNA fragment assembly,” American Journal of Undergraduate Research, 7 no.1, 2008.
  • A. Dean, J. Ellis-Monaghan, S. Hamilton, G. Pangborn, “Unit rectangle visibility graphs,” The Electronic Journal of Combinatorics, 15, no. 1 (2008) R79.
  • A. Austin, “The circuit partition polynomial, with applications and relation to the Tutte and interlace polynomials,” The Rose-Hulman Undergraduate Math Journal, 8 no. 2, 2007.
  • L. Beaudin, “A review of the Potts model: its relation to the Tutte polynomial and its application to complex experiments,” The Rose-Hulman Undergraduate Math Journal, 8 no. 1, 2007. Co-advised with G. Pangborn.
  • J. Ellis-Monaghan, P. Gutwin, J. Lewis, G. Pangborn, “Graph drawing for floorplanning with flexible blocks,” Congressus Numerantium, 178 (2006) 147-159.
  • J. Ellis-Monaghan, P. Gutwin, J. Lewis, G. Pangborn, “Principles and preliminary results for force directed floorplanning with malleable blocks,” Congressus Numerantium, 175 (2005), 81-96.
  • A. Daniels, J. Ellis-Monaghan, “Surreal seashells,” The Pi Mu Epsilon Journal, 12 no. 1 (2004), 36.