Publications

2024

Accurate estimation of the inhibition zone of antibiotics based on laser speckle imaging and multiple random speckle illumination

D Kim et al. (2024), Computers in Biology and Medicine, 108417. https://doi.org/10.1016/j.compbiomed.2024.108417

Targeted multispectral filter array design for the optimization of endoscopic cancer detection in the gastrointestinal tract

M Taylor-Williams et al. (2024), Journal of Biomedical Optics 29, 036005. https://doi.org/10.1117/1.JBO.29.3.036005

Fabrication of agar-based tissue-mimicking phantom for the technical evaluation of biomedical imaging systems

M Kim et al. (2024), Current Applied Physics 61, 80-85. https://doi.org/10.1016/j.cap.2024.02.013

2023

Study of a deep learning-based method for improving the spectral resolution of the spectral scanning hyperspectral imaging system via synthetic spectral image data

S Kim and S Jung et al. (2023), Journal of Physics D: Applied Physics 56, 054005. https://doi.org/10.1088/1361-6463/acae31

2022

Development of the adaptive pattern synthesis method for accurate structured illumination

I Park (2022), Optics and Lasers in Engineering 161, 107342. https://doi.org/10.1016/j.optlaseng.2022.107342

Assessment of angle-dependent spectral distortion to develop accurate hyperspectral endoscopy

J Lee (2022), Scientific Reports 12, 11892. https://doi.org/10.1038/s41598-022-16232-0

Deep Learning-Based Method for the Robust and Efficient Fault Diagnosis in the Electric Power System

D Yoon (2022), IEEE Access. https://doi.org/10.1109/ACCESS.2022.3170685

Hyperspectral Imaging for Clinical Applications

J Yoon (2022), Biochip Journal. https://doi.org/10.1007/s13206-021-00041-0

2021

First experience in clinical application of hyperspectral endoscopy for evaluation of colonic polyps

J Yoon, J Joseph, D Waterhouse, C Borzy, K Siemens, S Diamond, VL Tsikitis, SE Bohndiek (2021), Journal of Biophotonics. https://doi.org/10.1002/jbio.202100078

2020

A background correction method to compensate illumination variation in hyperspectral imaging

J Yoon, A Grigoroiu, SE Bohndiek (2020), Plos One 15(3): e0229502. https://doi.org/10.1371/journal.pone.0229502

Deep learning applied to hyperspectral endoscopy for online spectral classification

A Grigoroiu, J Yoon, SE Bohndiek (2020), Scientific Reports 10, Article number: 3947. https://doi.org/10.1038/s41598-020-60574-6

2019

Characterizing optical fiber transmission matrices using metasurface reflector stacks for lensless imaging without distal access

GSD Gordon, M Gataric, A Ramos, R Mouthaan, C Williams, J Yoon, TD Wilkinson, SE Bohndiek (2019), Phys. Rev. X 9, 041050. https://doi.org/10.1103/PhysRevX.9.041050

A clinically translatable hyperspectral endoscopy (HySE) system for imaging the gastrointestinal tract

J Yoon, J Joseph, D Waterhouse, A Luthman, GSD Gordon, M Pietro, W Januszewicz, RC Fitzgerald, SE Bohndiek (2019), Nature Communications volume 10, Article number: 1902. https://doi.org/10.1038/s41467-019-09484-4

2009~2018

Peer-Reviewed Journal Publications (+ First author, * Corresponding author)

DJ Waterhouse+, AS Luthman, J Yoon, GSD Gordon, and SE Bohndiek* (2018). Quantitative evaluation of comb-structure correction methods for multispectral fibrescopic imaging. Sci Rep. 8, 170801
J Yoon+, Y Jo, YS Kim, Y Yu, K Kim, J Park, S Lee, WS Park, and Y Park* (2018). Label-Free Identification of Lymphocyte Subtypes Using Three-Dimensional Phase Imaging and Machine Learning. J Vis Exp. 141, e58305
AS Luthman+, DW Waterhouse, L Bollepalli, J Yoon, GSD Gordon, J Joseph, and SE bohndiek* (2018). Bimodal reflectance and fluorescence multispectral endoscopy based on spectrally resolving detector arrays. J Biomed Opt. 24(3), 1-14
Y Jo+, S Park+, J Jung, J Yoon, H Joo, MH Kim, SJ Kang, MC Choi, SY Lee*, and Y Park* (2017). Holographic deep learning for rapid optical screening of anthrax spores. Sci Adv. 3(8), e1700606
J Yoon+, Y Jo+, MH Kim, K Kim, S Lee, SJ Kang, and Y Park* (2017). Identification of non-activated lymphocytes using three-dimensional refractive index tomography and machine learning. Sci Rep. 7, 6654
S Yang+, J yoon+, K Kim, and Y Park* (2017). Measurement of morphological and biophysical alterations in individual neuron cells associated with early neurotoxic effects in Parkinson’s disease. Cytometry Part A. 9(1), 510-518
TI Kim+, B Kwon+, J Yoon, IJ Park, GS Bang, Y Park, YS Seo, and SY Choi* (2017). Antibacterial Activities of Graphene Oxide-Molybdenum Disulfide Nanocomposite Films. ACS Appl Matter Interfaces. 9, 7908-7917
M Bennet+, D Gur, J Yoon, Y Park, and D Faivre* (2017). A Bacteria-Based Remotely Tunable Photonic Device. Adv Opt Mat. 5, 1600617.
J Jung+, L E. M, K Lee, P E Kazyoba, J Yoon, J J Massaga, K Kim, D Kim, and Y Park* (2016). Optical characterization of red blood cells from individuals with sickle cell trait and disease in Tanzania using quantitative phase imaging. Sci Rep. 6, 31698
J Jung+, K Kim, J Yoon, and Y Park* (2016). Hyperspectral optical diffraction tomography. Opt Express. 24(3), 2006-2012
K Kim+, SE Lee, J Yoon, J Heo, C Choi and Y Park* (2016). Three-dimensional label-free imaging and quantification of lipid droplets in live hepatocytes. Sci Rep. 6, 36815.
M Lee+, E Lee, J Jung, H Yu, K Kim, J Yoon, S Lee, Y Jeong and Y Park* (2016) Label-free optical quantification of structural alterations in Alzheimer’s disease. Sci Rep. 6, 31034.
S Lee+, J Yoon, M Choi, C Choi* (2016) Induction of neuronal activation by femtosecond‐pulsed laser irradiation and its potential application for amyloid‐β–induced toxicity assessment. J Biophotonics. 10(2), 311-319.
K Kim+, J Yoon, Y Park* (2016) Large-scale optical diffraction tomography for inspection of optical plastic lenses. Opt Lett. 41(5), 934-937.
K Kim+, J Yoon, S Shin, S Lee, S Yang and Y Park* (2016) Optical diffraction tomography techniques for the study of cell pathophysiology. J Biomed Photonics Eng. 2(2)
Y Baek+, K Lee, J Yoon, K Kim and Y Park* (2016) White-light quantitative phase imaging unit. Opt Express. 24(9), 9308-9315.
S Shin+, K Kim, J Yoon and Y Park* (2015) Active illumination using a digital micromirror device for quantitative phase imaging. Opt Lett. 40(22), 5407-5410
J Yoon+, K Kim, H Park, C Choi, S Jang and Y Park* (2015) Label-free characterization of white blood cells by measuring 3D refractive index maps. Biomed Opt Express. 6(10), 3865-3875 (selected as top 15 highly cited articles)
J Yoon+, M Lee+, K Lee, N Kim, J M Kim, J Park, C Choi, W D Heo* and Y Park* (2015) Optogenetic signaling-pathway regulation through scattering skull using wavefront shaping. Sci Rep. 5, 13289
J Yoon+, K Lee+, J Park and Y Park* (2015) Measuring optical transmission matrices by wavefront shaping. Opt Express. 23 (8), 10158-10167.
K Kim+, J Yoon and Y Park* (2015) Simultaneous 3D visualization and position tracking of optically trapped particels using optical diffraction tomography. Optica, 2(4), 343-346. (selected as a cover page article)
H Yu+, J Park, K Lee, J Yoon, K Kim, S Lee and Y Park* (2015) Recent advances in wavefront shaping techniques for biomedical applications. Current Applied Physics. 15(5), 632-641.
J Yoon+, S Ryu and C Choi* (2015) Cytosolic Irradiation of Femtosecond Laser Induces Apoptosis-like Cell Death by Induction of Intrinsic Reactive Oxygen Cascade. Sci Rep. 5, 8231.
J Yoon+, M Choi, T Ku, W J Choi and C Choi* (2014) Optical induction of muscle contraction at the tissue scale through intrinsic cellular amplifiers, J Biophotonics. 7(8): 597-606 (selected as a cover page article)
N Yim+, S Ryu, E C Han, J Yoon, K Choi and C Choi* (2014) Mutant ubiquitin UBB+1 induces mitochondrial fusion by destabilizing mitochondrial fission-specific proteins and confers resistance to oxidative stress-induced cell death in astrocytic cells. Plos One, 9(6), 99937.
Y Kim+, H Shim, K Kim, H Park, J H Heo, J Yoon, C Choi, S Jang and Y Park* (2014) Common-path diffraction optical tomography for investigation of three-dimensional structures and dynamics of biological cells. Opt Express. 22(9), 10398-10407.
S Chang+, S Song+, J Lee, J Yoon, J Park, S Choi, J Park, K Choi and C Choi* (2014) Phenotypic modulation of primary vascular smooth muscle cells by short-term culture on micropatterned substrate. PLoS One. 9(2), 88089.
26. S Ryu+, J Yoon, N Yim, K Choi, C Choi* (2013) Downregulation of OPA3 Is Responsible for Transforming Growth Factor-β-Induced Mitochondrial Elongation and F-Actin Rearrangement in Retinal Pigment Epithelial ARPE-19 Cells. PLoS One. 8(5), 63495.
J Yoon+, J Park, M Choi, W J Choi and C Choi* (2013) Application of femtosecond-pulsed lasers for direct optical manipulation of biological functions. Annalen der Physik. 525(3), 205-214. (selected as a cover page article)
S Ryu+, K Choi, J Yoon, S Kim and C Choi* (2012) Endoplasmic reticulum-specific BH3-only protein BNIP1 induces mitochondrial fragmentation in a Bcl-2- and Drp1- dependent manner. J Cell Physiol. 227(8), 3027-3035.
M Choi+, J Yoon, T Ku, K Choi and C Choi* (2011) Label-free optical activation of astrocyte in vivo. J Biomed Opt. 16(7), 075003.
M Choi+, T Ku, K Chong, J Yoon and C Choi* (2011) Minimally invasive molecular delivery into the brain using optical modulation of vascular permeability. Proc Natl Acad Sci. 108(22), 9256-9261.
M Choi+, J Yoon and C Choi* (2010) Label-free optical control of arterial contraction. J Biomed Opt. 15(1), 015006.