Code structure

GeoNet is divided into three sub folders

1. base
2. exec
3. mex

“base”

This folder holds the core MATLAB files of GeoNet:

• fast_marching.m
• geonet_defaults.m
• geonet_prepare.m
• geonet_processing.m
• geotiffwrite_user.m

“exec”

This folder contains the user templates. The templates are used to run GeoNet without modifying the core MATLAB files:

• ikawa_roi1_exec.m (sample template for sample data for ikawa_roi1)
• ikawa_roi2_exec.m (sample template for sample data for ikawa_roi2)

“mex”

This folder contains the MATLAB executables (MEX). MEX files are dynamically linked subroutines produced from C, C++, or Fortran source code that when compiled can be run from within MATLAB in the same way as MATLAB built in functions. (http://www.mathworks.com/support/tech-notes/1600/1605.html#intro).

• compile_mex.m
• fast_marching_config.h
• fib.cpp
• fib.h
• fibpriv.h
• flow_route.c
• perform_front_propagation_2d.cpp
• perform_front_propagation_2d.h
• perform_front_propagation_2d_mex.cpp