5)English CV
Ichiro TAMAKI, PhD
garageit(_at_mark_)gmail.com
replace (_at_mark_) with @ when you want to send an e-mail
Github: https://github.com/garageit46
Position
Assistant Professor, Gifu Academy of Forest Science and Culture; From October 2009 to March 2014
Lecturer, Gifu Academy of Forest Science and Culture; From March 2014 to March 2020
Associate Professor, Gifu Academy of Forest Science and Culture; From April 2020 to March 2024
Associate Professor, Gifu Field Science Center, Faculty of Applied Biological Sciences, Gifu University; From April 2024 to the present
Recent research interests
Hybridization and genetic structure in plant species
Forest regeneration by sprouting and seedlings
Past population demography and future prediction of genetic status of populations in plant species
Conservation genetics of rare plant species
Growing containerized seedlings for silviculture
Key word
Approximate Bayesian computation; Coalescent approach; Forest ecology; Gene flow; Genetic structure; Hybridization; Individual based simulation; Magnolia; Mating system; Past population demography; Phylogeography; Population genetics; Quercus; Rhododendron; Sprouting; Tea plant
Education
I got a PhD in Nagoya University (Japan) in 2009 and the title of Doctor thesis is the following.
Conservation genetic studies of Magnolia stellata: Effects of population size and population isolation on the persistence of populations
Publication (peer reviewed)
Tamaki I (2024) Confirmation of the new distribution of Quercus mongolicoides (H. Ohba) Hiroki in Mino City, Gifu Prefecture, Japan, and of its hybrid with Quercus serrata Murray. Bulletin of the Gifu Botanical Society 39: accepted (in Japanese with English abstract)
Setsuko S, Narita S, Tamaki I, Sugai K, Nagano AJ, Ujino-Ihara T, Kato H, Isagi Y (2024) Adaptive radiation of the Callicarpa genus in the Bonin Islands revealed through double-digest restriction site-associated DNA sequencing analysis. Ecology and Evolution 14: e70216
Koyama Y, Ozeki, M, Tamaki I (2024) New locations of Fumoto-mizunara in Central Nagano Prefecture. Bulletin of The Botanical Society of Nagano 57: 103–106 (In Japanese)
Setsuko S, Sugai K, Tamaki I, Hayama K, Kato H (2024) Ecotype variation in the endemic tree Callicarpa subpubescens on small oceanic islands: genetic, phenotypic, and environmental insights. Heredity 132: 309–319
Fukuda T, Ishikawa N, Chernyagina OA, Barkalov VY, Taran AA, Yakubov VV, Marchuk EA, Linnik EV, Tamaki I (2024) Phylogeography and chromosome number variation in Micranthes nelsoniana and related species (Saxifragaceae) in Northeast Asia. Botanical Journal of the Linnean Society 205: 313–338
Tamaki I, Mizuno M, Ohtsuki T, Shutoh K, Tabata, R, Tsunamoto Y, Suyama Y, Nakajima Y, Kubo N, Ito T, Noma N, Harada E (2023) Phylogenetic, population structure, and population demographic analyses reveal that Vicia sepium in Japan is native and not introduced. Scientific Reports 13: 20746
Yoichi W, Matsuzawa S, Tamaki I, Nagano A, Oh S-H (2023) Genetic differentiation and evolution of broad-leaved evergreen shrub and tree varieties of Daphniphyllum macropodum (Daphniphyllaceae). Heredity 131: 211–220
Choi I-S, Han E-K, Wojciechowski MF, Heo T-I, Park J-S, Yang J-C, Gantsetseg A, Cheon K-S, Tamaki I, Lee J-H (2023) The genetic structure and demographic history of Zabelia tyaihyonii, endemic to Korean limestone karst forests, based on genome-wide SNP markers. Ecology and Evolution 13: e10252
Taguchi K, Tamaki I, Moteki Y (2023) Possibility of grwoing Japanese cypress containerized seedlings using local materials with low CO2 emission. Japanese Journal of the Japanese Forest Society 105: 233–238 (In Japanese with English abstract)
Yoichi W, Tamaki I, Oh S-H, Nagano AJ, Uehara K, Tomaru N, Abe H (2023) The evolutionary history of rice azaleas (Rhododendron tschonoskii alliance) involved niche evolution to a montane environment. American Journal of Botany 110: e16166
Kitamura K, Hara M, Tamaki I (2023) Listen to the voices of local beech forests: An ecological and evolutionary conception of beech under phylogenetic and environmental constraints. Ecological Research 38: 214–217
Unno S, Tamaki I, Ando M, Tsuda K (2023) Distribution of Haemadipsa japonica and environmental factors that effect on it in Gifu Prefecture, Japan. Chubu Forestry Research 71: 69–72 (In Japanese)
Tamaki I, Kanayama H, Tanaka K, Moteki Y (2023) How to grow containerized seedlings of Japanese cypress with a local bark compost in Gifu Prefecture, Japan? Chubu Forestry Research 71: 3–6 (In Japanese)
Iwaizumi MG, Mukasyaf AA, Tamaki I, Nasu J, Miyamoto N, Tamura M, Watanabe A (2023) Genetic diversity and structure of seed pools in an old planted Pinus thunbergii population and seed collection strategy for gene preservation. Tree Genetics & Genomes 19: 9
Han E-K, Tamaki I, Oh S-H, Park J-S, Cho W-B, Jin D-P, Kim B-Y, Yang S, Son DC, Choi H-J, Gantsetseg A, Isagi Y, Lee J-H (2023) Genetic and demographic signatures accompanying the evolution of the selfing syndrome in Daphne kiusiana, an evergreen shrub. Annals of Botany 131: 751–767
Veltjen E, Tamaki I, Asselman P, Goetghebeur P, Samain M-S, Larridon I (2023) Genetic patterns of Magnolia in the Lesser Antilles: stepwise colonization leading to highly inbred island 'populations'. Journal of Biogeography 50: 130–144
Setsuko S, Sugai K, Tamaki I, Takayama K, Kato H (2022) Contrasting genetic diversity between Planchonella obovata sensu lato (Sapotaceae) on old continental and young oceanic island populations in Japan. PLoS ONE 17: e0273871
Tamaki I, Kagohashi M (2021) Western limit of natural habitats of Acer pycnanthum K. Koch. Bulletin of the Gifu Botanical Society 36: 3–6 (in Japanese with English abstract)
Han E-K, Cho W-B, Tamaki I, Choi I-S, Lee J-H (2021) Comparative mitogenomic analysis reveals gene and intron dynamics in Rubiaceae and intra-specific diversification in Damnacanthus indicus. International Journal of Molecular Sciences 22: 7237
Tamaki I, Obora T, Ohsawa T, Matsumoto A, Saito Y, Ide Y (2021) Different population size change and migration histories created genetic diversity of three oaks in Tokai region, central Japan. Journal of Plant Research 134: 933–946
Tamaki I, Wadasaki N, Ishida K, Tomaru N (2021) Reciprocal crosses between Magnolia stellata and Magnolia kobus do not show significant reproductive barriers in seed formation. Plant Species Biology 36: 596–601
Worth JRP, Tamaki I, Tsuyama I, Harrison PA, Sugai K, Sakio H, Aizawa M, Kikuchi S (2021) Genetic distinctiveness but low diversity characterizes rear-edge Thuja standishii (Gordon) Carr. (Cupressaceae) populations in southwest Japan. Diversity 13: 185
Nomura K, Nomura R, Tamaki I, Kikuchi S (2021) Successful seedling recruitment on a reclaimed hillslope of a housing complex provides insight into the regeneration traits of an endangered tree, Acer pycnanthum. Japanese Journal of Conservation Ecology 26: 297–305 (in Japanese with English abstract)
García-Verdugo C, Mairal M, Tamaki I, Msanda F (2021) Phylogeography at the crossroad: Pleistocene range expansion throughout the Mediterranean and back-colonization from the Canary Islands in the legume Bituminaria bituminosa. Journal of Biogeography 48: 1622–1634
Suzuki K, Tamaki I, Tanaka K, Moteki Y (2021) Composting of unutilized sika deer meat and its evaluation with containerized seedling of Japanese cedar. Chubu Forestry Research 69: 13–16 (in Japanese)
Tamaki I, Nomura K, Nomura R, Tate C, Fukaya S, Niwa H, Ando K, Yabe Y (2021) Survival, growth and reproduction of sprouted individuals of star magnolia two years after clearcutting. Journal of Forest Research 26: 26–31
Tamaki I, Yamada Y (2020) Environmental pressure rather than ongoing hybridization is responsible for an altitudinal cline in the morphologies of two oaks. Journal of Plant Ecology 13: 413–422
Zhu S-S, Comes, HP, Tamaki I, Cao Y-N, Sakaguchi S, Yap Z-Y, Ding Y-Q, Qiu Y-X (2020) Patterns of genotype variation and demographic history in Lindera glauca (Lauraceae), an apomict-containing dioecious forest tree. Journal of Biogeography 47: 2002–2016
Setsuko S, Sugai K, Tamaki I, Takayama K, Kato H, Yoshimaru H (2020) Genetic diversity, structure, and demography of Pandanus boninensis (Pandanaceae) with sea drifted seeds, endemic to the Ogasawara Islands of Japan: comparison between young and old islands. Molecular Ecology 29: 1050–1068
Lu R-S, Chen Y, Tamaki I, Sakaguchi S, Ding Y-Q, Takahashi D, Li P, Isaji Y, Chen J, Qiu Y-X (2020) Pre-quaternary diversification and glacial demographic expansions of Cardiocrinum (Liliaceae) in temperate forest biomes of Sino-Japanese Floristic Region. Molecular Phylogenetics and Evolution 143: 106693
Tamaki I, Kawashima N, Setsuko S, Lee J-H, Itaya A, Yukitoshi K, Tomaru N (2019) Population genetic structure and demography of Magnolia kobus: variety borealis is not supported genetically. Journal of Plant Research 132: 741–758
Aoki K, Tamaki I, Nakao K, Ueno S, Kamijo T, Setoguchi H, Murakami N, Kato M, Tsumura Y (2019) Approximate Bayesian computation analysis of EST associated microsatellites indicates that the broadleaved evergreen tree Castanopsis sieboldii survived the Last Glacial Maximum in multiple refugia in Japan. Heredity 122: 326–340
Tamaki I, Kawashima N, Setsuko S, Itaya A, Tomaru N (2018) Morphological and genetic divergence between two lineages of Magnolia salicifolia (Magnoliaceae) in Japan. Biological Journal of the Linnean Society 125: 475–490
Tamaki I, Nomura K, Nomura R, Tate C, Watanabe C, Miyakami Y, Yabe Y (2018) Evaluation of a field experiment for the conservation of a Magnolia stellata stand using clear-cutting. Landscape and Ecological Engineering 14: 269–276
Hiraoka Y, Tamaki I, Watanabe A (2018) The origin of wild populations of Toxicodendron succedaneum on mainland Japan revealed by genetic variation in chloroplast and nuclear DNA. Journal of Plant Research 131: 225–238
Tamaki I, Tani S, Setsuko S, Ueno S, Wadasaki N, Tomaru N (2017) Reduced incompatibility in the production of second generation hybrids between two Magnolia species revealed by Bayesian gene dispersal modeling. American Journal of Botany 104: 1546–1555
Chen C, Lu R, Zhu S, Tamaki I, Qiu YX ( 2017) Population structure and historical demography of Dipteronia dyeriana (Sapindaceae), an extremely narrow palaeoendemic plant from China: implications for conservation in a biodiversity hotspot. Heredity 119: 95–106
Tamaki I, Yoichi W, Matsuki Y, Suyama Y, Mizuno M (2017) Inconsistency between morphological traits and ancestry of individuals in the hybrid zone between two Rhododendron japonoheptamerum varieties revealed by a genotyping-by-sequencing approach. Tree Genetics & Genomes 13: 4
Yoichi W, Jin X-F, Peng C-I, Tamaki I, Tomaru N (2017) Contrasting diversification history of three-leaved azaleas (Rhododendron section Brachycalyx) in East Asia between insular and continental species. Journal of Biogeography 44: 1065–1076
Yoichi W, Tamaki I, Sakaguchi S, Song, J-S, Yamamoto S, Tomaru N (2016) Population demographic history of a temperate shrub, Rhododendron weyrichii (Ericaceae), on continental islands of Japan and South Korea. Ecology and Evolution 6: 8800–8810
Tamaki I, Setsuko S, Sugai K, Yanagisawa N (2016) Development of microsatellite makers for the clonal shrub, Orixa japonica (Rutaceae) using 454 sequencing. Applications in Plant Sciences 4: 1600066
Tamaki I, Mizuno M, Yanagisawa N, Tsuda K, Nakagawa Y, Itaya A (2016) Tree community structure and species diversity of naturally regenerated forests remaining in urban green areas in northeastern Nagoya, Japan. Japanese Journal of Conservation Ecology 21: 93–102 (in Japanese with English abstract)
Izuno A, Hatakeyama M, Nishiyama T, Tamaki I, Shimizu-Inatsugi R, Sasaki R, Shimizu KK, Isagi Y (2016) Genome sequencing of Metrosideros polymorpha (Myrtaceae), a dominant species in various habitats in the Hawaiian Islands with remarkable phenotypic variations. Journal of Plant Research 129: 727–736
Tamaki I, Setsuko S, Tomaru N (2016) Genetic diversity and structure of remnant Magnolia stellata populations affected by anthropogenic pressures and a conservation strategy for maintaining their current genetic diversity. Conservation Genetics 17: 715–725
Matsushita M, Setsuko S, Tamaki I, Nakagawa M, Nishimura N, Tomaru N (2016) Thinning operations increase the demographic performance of the rare subtree species Magnolia stellata in a suburban forest landscape. Landscape and Ecological Engineering 12: 179–186
Tamaki I, Kuze T, Hirota K, Mizuno M (2016) Genetic variation and population demography of the landrace population of Camellia sinensis in Kasuga, Gifu Prefecture, Japan. Genetic Resources and Crop Evolution 63: 823–831
Tamaki I, Nomura K, Nomura R, Tate C, Ogiso M, Miyakami Y, Yabe Y (2015) Seedling survival and growth during two years following seed germination of Magnolia stellata, a threatened sub canopy tree, after clearcutting. Journal of Forest Research 20: 415–419
Torimaru T, Takeda Y, Matsushita M, Tamaki I, Sano J, Tomaru N (2015) Family-specific responses in survivorship and phenotypic traits to different light environments in a seedling population of Fagus crenata in a cool-temperate forest. Population Ecology 57: 77–91
Tani S, Tamaki I, Setsuko S, Tomaru N (2014) Differences in seed formation and germination rates between reciprocal interspecific crosses in Magnolia stellata and M. salicifolia. Journal of the Japanese Forest Society 96: 200–205 (in Japanese with English abstract)
Tamaki I, Nomura K, Nomura R, Tate C, Ogiso M, Miyakami Y (2014) Regeneration of Magnolia stellata by sprouting and seedling establishment during the first year after clearcutting. Journal of the Japanese Forest Society 96: 193–199 (in Japanese with English abstract)
Tamaki I, Okada M (2014) Genetic admixing of two evergreen oaks, Quercus acuta and Q. sessilifolia (subgenus Cyclobalanopsis), is the result of interspecific introgressive hybridization. Tree Genetics & Genomes 10: 989–999
Muranishi S, Tamaki I, Setsuko S, Tomaru N (2013) Asymmetric introgression between Magnolia stellata and M. salicifolia at a site where the two species grow sympatrically. Tree Genetics & Genomes 9: 1005–1015
Muranishi S, Tamaki I, Setsuko S, Tomaru N (2011) Identification of natural hybrids between Magnolia stellata and M. salicifolia. Chubu Forestry Research 59:39–42 (in Japanese)
Tokumoto Y, Matsushita, M, Tamaki I, Sakai S and Nakagawa M (2009) How does flowering magnitude affect seed survival in Shorea pilosa (Dipterocarpaceae) at the predispersal stage, in Malaysia? Plant Species Biology 24: 104–108
Tamaki I, Ishida K, Setsuko S, Tomaru N (2009) Inter-population variation in mating system and late-stage inbreeding depression in Magnolia stellata. Molecular Ecology 18: 2365–2374
Tamaki I, Setsuko S, Tomaru N (2009) Estimation of outcrossing rates at hierarchical levels of fruits, individuals, populations and species in Magnolia stellata. Heredity 102: 381-388
Tamaki I, Setsuko S, Tomaru N (2009) Intra- and inter- population genetic structure of Magnolia stellata populations in northern Mie Prefecture. Chubu Forestry Research 57: 51–54 (in Japanese)
Kimura T, Setsuko S, Tamaki I, Tomaru N (2009) Population dynamics of Magnolia stellata growing along the Yato River in Kaisho Forest. Chubu Forestry Research 57: 47–50 (in Japanese)
Tamaki I, Setsuko S, Tomaru N (2008) Genetic variation and differentiation in populations of a threatened tree, Magnolia stellata: factors influencing the level of within-population genetic variation. Heredity 100: 415–423
Tamaki I, Setsuko S, Tomaru N (2008) Effects of population isolation and small population size on three remnant populations of Magnolia stellata in Yokkaichi, Mie Prefecture. Chubu Forestry Research 56: 25–28 (in Japanese)
Setsuko S, Tamaki I, Ishida K, Tomaru N (2008) Relationships between flowering phenology and female reproductive success in the Japanese tree species Magnolia stellata. Botany 86: 248–258
Tamaki I, Hoshino D, Setsuko S, Tomaru N, Yamamoto S (2005) Population structure of woody species in the Kaisho forest. Chubu Forestry Research 53: 45–48 (in Japanese)
Review experiences in scientific journals
African Journal of Agricultural Research
African Journal of Biotechnology
Agricultural Science Reserch Journal
American Journal of Botany
Biochemical Genetics
Biodiversitas
Biological Journal of the Linnean Society
BMC Ecology and Evolution
BMC Plant Biology
Botanical Jounarl of the Linnean Society
Dendrobiology
Edaphologia
Ecological Research
Ecology and Evolution
Evolutionary Ecology
Forests
Frontiers in Plant Science
Genes & Genetic Systems
Genetica
International Jounral of Biotechnology and Molecular Biology Review
International Jounarl of Genetics and Molecular Biology
International Research Jounral of Biotechnology
Journal of Biogeography
Journal of Food and Agricultural Sciences
Journal of Forest Research
Journal of Medicinal Plant Research
Journal of Plant Breeding and Crop Science
Journal of Plant Research
Landscape and Ecological Engineering
Molecular Ecology
Molecular Breeding
New Zealand Journal of Botany
Pakistan Journal of Botany
PeerJ
Plant Breeding
Plant Ecology
Plant Ecology & Diversity
Plant Species Biology
PLOS ONE
Population Ecology
Proceedings of the Royal Society B
Scientific Reports
Tree Genetics & Genomes
Trees