5）English CV

Ichiro TAMAKI, PhD

garageit(_at_mark_)gmail.com

tamaki.ichiro.z9(_at_mark_)f.gifu-u.ac.jp

replace (_at_mark_) with @ when you want to send an e-mail

Github: https://github.com/garageit46

Position

Assistant Professor, Gifu Academy of Forest Science and Culture; From October 2009 to March 2014

Lecturer, Gifu Academy of Forest Science and Culture; From March 2014 to March 2020

Associate Professor, Gifu Academy of Forest Science and Culture; From April 2020 to March 2024

Associate Professor, Gifu Field Science Center, Faculty of Applied Biological Sciences, Gifu University; From April 2024 to the present

Recent research interests

• Hybridization and genetic structure in plant species

• Forest regeneration by sprouting and seedlings

• Past population demography and future prediction of genetic status of populations in plant species

• Conservation genetics of rare plant species

• Growing containerized seedlings for silviculture

Key word

Approximate Bayesian computation; Coalescent approach; Forest ecology; Gene flow; Genetic structure; Hybridization; Individual based simulation; Magnolia; Mating system; Past population demography; Phylogeography; Population genetics; Quercus; Rhododendron; Sprouting; Tea plant

Education

I got a PhD in Nagoya University (Japan) in 2009 and the title of Doctor thesis is the following.

Conservation genetic studies of Magnolia stellata: Effects of population size and population isolation on the persistence of populations

Publication (peer reviewed)

1. Han E-K, Tamaki I, Heo T-I, Byeon J-G, Gantsetseg A, Jang Y-J, Park J-S, Lee J-H (2025) Genetic variation and structure shaped by recent population fragmentation in the boreal conifer Thuja koraiensis: Conservation perspectives. Global Ecology and Conservation 59: e03573

2. Tamaki I (2024) Confirmation of the new distribution of Quercus mongolicoides (H. Ohba) Hiroki in Mino City, Gifu Prefecture, Japan, and of its hybrid with Quercus serrata Murray. Bulletin of the Gifu Botanical Society 39: 27–30 (in Japanese with English abstract)

3. Setsuko S, Narita S, Tamaki I, Sugai K, Nagano AJ, Ujino-Ihara T, Kato H, Isagi Y (2024) Adaptive radiation of the Callicarpa genus in the Bonin Islands revealed through double-digest restriction site-associated DNA sequencing analysis. Ecology and Evolution 14: e70216

4. Koyama Y, Ozeki, M, Tamaki I (2024) New locations of Fumoto-mizunara in Central Nagano Prefecture. Bulletin of The Botanical Society of Nagano 57: 103–106 (In Japanese)

5. Setsuko S, Sugai K, Tamaki I, Hayama K, Kato H (2024) Ecotype variation in the endemic tree Callicarpa subpubescens on small oceanic islands: genetic, phenotypic, and environmental insights. Heredity 132: 309–319

6. Fukuda T, Ishikawa N, Chernyagina OA, Barkalov VY, Taran AA, Yakubov VV, Marchuk EA, Linnik EV, Tamaki I (2024) Phylogeography and chromosome number variation in Micranthes nelsoniana and related species (Saxifragaceae) in Northeast Asia. Botanical Journal of the Linnean Society 205: 313–338

7. Tamaki I, Mizuno M, Ohtsuki T, Shutoh K, Tabata, R, Tsunamoto Y, Suyama Y, Nakajima Y, Kubo N, Ito T, Noma N, Harada E (2023) Phylogenetic, population structure, and population demographic analyses reveal that Vicia sepium in Japan is native and not introduced. Scientific Reports 13: 20746

8. Yoichi W, Matsuzawa S, Tamaki I, Nagano A, Oh S-H (2023) Genetic differentiation and evolution of broad-leaved evergreen shrub and tree varieties of Daphniphyllum macropodum (Daphniphyllaceae). Heredity 131: 211–220

9. Choi I-S, Han E-K, Wojciechowski MF, Heo T-I, Park J-S, Yang J-C, Gantsetseg A, Cheon K-S, Tamaki I, Lee J-H (2023) The genetic structure and demographic history of Zabelia tyaihyonii, endemic to Korean limestone karst forests, based on genome-wide SNP markers. Ecology and Evolution 13: e10252

10. Taguchi K, Tamaki I, Moteki Y (2023) Possibility of grwoing Japanese cypress containerized seedlings using local materials with low CO2 emission. Japanese Journal of the Japanese Forest Society 105: 233–238 (In Japanese with English abstract)

11. Yoichi W, Tamaki I, Oh S-H, Nagano AJ, Uehara K, Tomaru N, Abe H (2023) The evolutionary history of rice azaleas (Rhododendron tschonoskii alliance) involved niche evolution to a montane environment. American Journal of Botany 110: e16166

12. Kitamura K, Hara M, Tamaki I (2023) Listen to the voices of local beech forests: An ecological and evolutionary conception of beech under phylogenetic and environmental constraints. Ecological Research 38: 214–217

13. Unno S, Tamaki I, Ando M, Tsuda K (2023) Distribution of Haemadipsa japonica and environmental factors that effect on it in Gifu Prefecture, Japan. Chubu Forestry Research 71: 69–72 (In Japanese)

14. Tamaki I, Kanayama H, Tanaka K, Moteki Y (2023) How to grow containerized seedlings of Japanese cypress with a local bark compost in Gifu Prefecture, Japan? Chubu Forestry Research 71: 3–6 (In Japanese)

15. Iwaizumi MG, Mukasyaf AA, Tamaki I, Nasu J, Miyamoto N, Tamura M, Watanabe A (2023) Genetic diversity and structure of seed pools in an old planted Pinus thunbergii population and seed collection strategy for gene preservation. Tree Genetics & Genomes 19: 9

16. Han E-K, Tamaki I, Oh S-H, Park J-S, Cho W-B, Jin D-P, Kim B-Y, Yang S,  Son DC, Choi H-J, Gantsetseg A, Isagi Y, Lee J-H (2023) Genetic and demographic signatures accompanying the evolution of the selfing syndrome in Daphne kiusiana, an evergreen shrub. Annals of Botany 131: 751–767

17. Veltjen E, Tamaki I, Asselman P, Goetghebeur P, Samain M-S, Larridon I (2023) Genetic patterns of Magnolia in the Lesser Antilles: stepwise colonization leading to highly inbred island 'populations'. Journal of Biogeography 50: 130–144

18. Setsuko S, Sugai K, Tamaki I, Takayama K, Kato H (2022) Contrasting genetic diversity between Planchonella obovata sensu lato (Sapotaceae) on old continental and young oceanic island populations in Japan. PLoS ONE 17: e0273871

19. Tamaki I, Kagohashi M (2021) Western limit of natural habitats of Acer pycnanthum K. Koch. Bulletin of the Gifu Botanical Society 36: 3–6 (in Japanese with English abstract)

20. Han E-K, Cho W-B, Tamaki I, Choi I-S, Lee J-H (2021) Comparative mitogenomic analysis reveals gene and intron dynamics in Rubiaceae and intra-specific diversification in Damnacanthus indicus. International Journal of Molecular Sciences 22: 7237

21. Tamaki I, Obora T, Ohsawa T, Matsumoto A, Saito Y, Ide Y (2021) Different population size change and migration histories created genetic diversity of three oaks in Tokai region, central Japan. Journal of Plant Research 134: 933–946

22. Tamaki I, Wadasaki N, Ishida K, Tomaru N (2021) Reciprocal crosses between Magnolia stellata and Magnolia kobus do not show significant reproductive barriers in seed formation. Plant Species Biology 36: 596–601

23. Worth JRP, Tamaki I, Tsuyama I, Harrison PA, Sugai K, Sakio H, Aizawa M, Kikuchi S (2021) Genetic distinctiveness but low diversity characterizes rear-edge Thuja standishii (Gordon) Carr. (Cupressaceae) populations in southwest Japan. Diversity 13: 185

24. Nomura K, Nomura R, Tamaki I, Kikuchi S (2021) Successful seedling recruitment on a reclaimed hillslope of a housing complex provides insight into the regeneration traits of an endangered tree, Acer pycnanthum. Japanese Journal of Conservation Ecology 26: 297–305 (in Japanese with English abstract)

25. García-Verdugo C, Mairal M, Tamaki I, Msanda F (2021) Phylogeography at the crossroad: Pleistocene range expansion throughout the Mediterranean  and back-colonization from the Canary Islands in the legume Bituminaria bituminosa. Journal of Biogeography 48: 1622–1634

26. Suzuki K, Tamaki I, Tanaka K, Moteki Y (2021) Composting of unutilized sika deer meat and its evaluation with containerized seedling of Japanese cedar. Chubu Forestry Research 69: 13–16 (in Japanese)

27. Tamaki I, Nomura K, Nomura R, Tate C, Fukaya S, Niwa H, Ando K, Yabe Y (2021) Survival, growth and reproduction of sprouted individuals of star magnolia two years after clearcutting. Journal of Forest Research 26: 26–31

28. Tamaki I, Yamada Y (2020) Environmental pressure rather than ongoing hybridization is responsible for an altitudinal cline in the morphologies of two oaks. Journal of Plant Ecology 13: 413–422

29. Zhu S-S, Comes, HP, Tamaki I, Cao Y-N, Sakaguchi S, Yap Z-Y, Ding Y-Q, Qiu Y-X (2020) Patterns of genotype variation and demographic history in Lindera glauca (Lauraceae), an apomict-containing dioecious forest tree. Journal of Biogeography 47: 2002–2016

30. Setsuko S, Sugai K, Tamaki I, Takayama K, Kato H, Yoshimaru H (2020) Genetic diversity, structure, and demography of Pandanus boninensis (Pandanaceae) with sea drifted seeds, endemic to the Ogasawara Islands of Japan: comparison between young and old islands. Molecular Ecology 29: 1050–1068

31. Lu R-S, Chen Y, Tamaki I, Sakaguchi S, Ding Y-Q, Takahashi D, Li P, Isaji Y, Chen J, Qiu Y-X (2020) Pre-quaternary diversification and glacial demographic expansions of Cardiocrinum (Liliaceae) in temperate forest biomes of Sino-Japanese Floristic Region. Molecular Phylogenetics and Evolution 143: 106693

32. Tamaki I, Kawashima N, Setsuko S, Lee J-H, Itaya A, Yukitoshi K, Tomaru N (2019) Population genetic structure and demography of Magnolia kobus: variety borealis is not supported genetically. Journal of Plant Research 132: 741–758

33. Aoki K, Tamaki I, Nakao K, Ueno S, Kamijo T, Setoguchi H, Murakami N, Kato M, Tsumura Y (2019) Approximate Bayesian computation analysis of EST associated microsatellites indicates that the broadleaved evergreen tree Castanopsis sieboldii survived the Last Glacial Maximum in multiple refugia in Japan. Heredity 122: 326–340

34. Tamaki I, Kawashima N, Setsuko S, Itaya A, Tomaru N (2018) Morphological and genetic divergence between two lineages of Magnolia salicifolia (Magnoliaceae) in Japan. Biological Journal of the Linnean Society 125: 475–490

35. Tamaki I, Nomura K, Nomura R, Tate C, Watanabe C, Miyakami Y, Yabe Y (2018) Evaluation of a field experiment for the conservation of a Magnolia stellata stand using clear-cutting. Landscape and Ecological Engineering 14: 269–276

36. Hiraoka Y, Tamaki I, Watanabe A (2018) The origin of wild populations of Toxicodendron succedaneum on mainland Japan revealed by genetic variation in chloroplast and nuclear DNA. Journal of Plant Research 131: 225–238

37. Tamaki I, Tani S, Setsuko S, Ueno S, Wadasaki N, Tomaru N (2017) Reduced incompatibility in the production of second generation hybrids between two Magnolia species revealed by Bayesian gene dispersal modeling. American Journal of Botany 104: 1546–1555

38. Chen C, Lu R, Zhu S, Tamaki I, Qiu YX ( 2017) Population structure and historical demography of Dipteronia dyeriana (Sapindaceae), an extremely narrow palaeoendemic plant from China: implications for conservation in a biodiversity hotspot. Heredity 119: 95–106

39. Tamaki I, Yoichi W, Matsuki Y, Suyama Y, Mizuno M (2017) Inconsistency between morphological traits and ancestry of individuals in the hybrid zone between two Rhododendron japonoheptamerum varieties revealed by a genotyping-by-sequencing approach. Tree Genetics & Genomes 13: 4

40. Yoichi W, Jin X-F, Peng C-I, Tamaki I, Tomaru N (2017) Contrasting diversification history of three-leaved azaleas (Rhododendron section Brachycalyx) in East Asia between insular and continental species. Journal of Biogeography 44: 1065–1076

41. Yoichi W, Tamaki I, Sakaguchi S, Song, J-S, Yamamoto S, Tomaru N (2016) Population demographic history of a temperate shrub, Rhododendron weyrichii (Ericaceae), on continental islands of Japan and South Korea. Ecology and Evolution 6: 8800–8810

42. Tamaki I, Setsuko S, Sugai K, Yanagisawa N (2016) Development of microsatellite makers for the clonal shrub, Orixa japonica (Rutaceae) using 454 sequencing. Applications in Plant Sciences 4: 1600066

43. Tamaki I, Mizuno M, Yanagisawa N, Tsuda K, Nakagawa Y, Itaya A (2016) Tree community structure and species diversity of naturally regenerated forests remaining in urban green areas in northeastern Nagoya, Japan. Japanese Journal of Conservation Ecology 21: 93–102 (in Japanese with English abstract)

44. Izuno A, Hatakeyama M, Nishiyama T, Tamaki I, Shimizu-Inatsugi R, Sasaki R, Shimizu KK, Isagi Y (2016) Genome sequencing of Metrosideros polymorpha (Myrtaceae), a dominant species in various habitats in the Hawaiian Islands with remarkable phenotypic variations. Journal of Plant Research 129: 727–736

45. Tamaki I, Setsuko S, Tomaru N (2016) Genetic diversity and structure of remnant Magnolia stellata populations affected by anthropogenic pressures and a conservation strategy for maintaining their current genetic diversity. Conservation Genetics 17: 715–725

46. Matsushita M, Setsuko S, Tamaki I, Nakagawa M, Nishimura N, Tomaru N (2016) Thinning operations increase the demographic performance of the rare subtree species Magnolia stellata in a suburban forest landscape. Landscape and Ecological Engineering 12: 179–186

47. Tamaki I, Kuze T, Hirota K, Mizuno M (2016) Genetic variation and population demography of the landrace population of Camellia sinensis in Kasuga, Gifu Prefecture, Japan. Genetic Resources and Crop Evolution 63: 823–831

48. Tamaki I, Nomura K, Nomura R, Tate C, Ogiso M, Miyakami Y, Yabe Y (2015) Seedling survival and growth during two years following seed germination of Magnolia stellata, a threatened sub canopy tree, after clearcutting. Journal of Forest Research 20: 415–419

49. Torimaru T, Takeda Y, Matsushita M, Tamaki I, Sano J, Tomaru N (2015) Family-specific responses in survivorship and phenotypic traits to different light environments in a seedling population of Fagus crenata in a cool-temperate forest. Population Ecology 57: 77–91

50. Tani S, Tamaki I, Setsuko S, Tomaru N (2014) Differences in seed formation and germination rates between reciprocal interspecific crosses in Magnolia stellata and M. salicifolia. Journal of the Japanese Forest Society 96: 200–205 (in Japanese with English abstract)

51. Tamaki I, Nomura K, Nomura R, Tate C, Ogiso M, Miyakami Y (2014) Regeneration of Magnolia stellata by sprouting and seedling establishment during the first year after clearcutting. Journal of the Japanese Forest Society 96: 193–199 (in Japanese with English abstract)

52. Tamaki I, Okada M (2014) Genetic admixing of two evergreen oaks, Quercus acuta and Q. sessilifolia (subgenus Cyclobalanopsis), is the result of interspecific introgressive hybridization. Tree Genetics & Genomes 10: 989–999

53. Muranishi S, Tamaki I, Setsuko S, Tomaru N (2013) Asymmetric introgression between Magnolia stellata and M. salicifolia at a site where the two species grow sympatrically. Tree Genetics & Genomes 9: 1005–1015

54. Muranishi S, Tamaki I, Setsuko S, Tomaru N (2011) Identification of natural hybrids between Magnolia stellata and M. salicifolia. Chubu Forestry Research 59:39–42 (in Japanese)

55. Tokumoto Y, Matsushita, M, Tamaki I, Sakai S and Nakagawa M (2009) How does flowering magnitude affect seed survival in Shorea pilosa (Dipterocarpaceae) at the predispersal stage, in Malaysia? Plant Species Biology 24: 104–108

56. Tamaki I, Ishida K, Setsuko S, Tomaru N (2009) Inter-population variation in mating system and late-stage inbreeding depression in Magnolia stellata. Molecular Ecology 18: 2365–2374

57. Tamaki I, Setsuko S, Tomaru N (2009) Estimation of outcrossing rates at hierarchical levels of fruits, individuals, populations and species in Magnolia stellata. Heredity 102: 381-388

58. Tamaki I, Setsuko S, Tomaru N (2009) Intra- and inter- population genetic structure of Magnolia stellata populations in northern Mie Prefecture. Chubu Forestry Research 57: 51–54 (in Japanese)

59. Kimura T, Setsuko S, Tamaki I, Tomaru N (2009) Population dynamics of Magnolia stellata growing along the Yato River in Kaisho Forest. Chubu Forestry Research 57: 47–50 (in Japanese)

60. Tamaki I, Setsuko S, Tomaru N (2008) Genetic variation and differentiation in populations of a threatened tree, Magnolia stellata: factors influencing the level of within-population genetic variation. Heredity 100: 415–423

61. Tamaki I, Setsuko S, Tomaru N (2008) Effects of population isolation and small population size on three remnant populations of Magnolia stellata in Yokkaichi, Mie Prefecture. Chubu Forestry Research 56: 25–28 (in Japanese)

62. Setsuko S, Tamaki I, Ishida K, Tomaru N (2008) Relationships between flowering phenology and female reproductive success in the Japanese tree species Magnolia stellata. Botany 86: 248–258

63. Tamaki I, Hoshino D, Setsuko S, Tomaru N, Yamamoto S (2005) Population structure of woody species in the Kaisho forest. Chubu Forestry Research 53: 45–48 (in Japanese)

Review experiences in scientific journals

• African Journal of Agricultural Research

• African Journal of Biotechnology

• Agricultural Science Reserch Journal

• American Journal of Botany

• Biochemical Genetics

• Biodiversitas

• Biological Journal of the Linnean Society

• BMC Ecology and Evolution

• BMC Plant Biology

• Botanical Jounarl of the Linnean Society

• Dendrobiology

• Edaphologia

• Ecological Research

• Ecology and Evolution

• Evolutionary Ecology

• Forest Science and Technology

• Forests

• Frontiers in Plant Science

• Genes & Genetic Systems

• Genetica

• International Jounral of Biotechnology and Molecular Biology Review

• International Jounarl of Genetics and Molecular Biology

• International Research Jounral of Biotechnology

• Journal of Biogeography

• Journal of Food and Agricultural Sciences

• Journal of Forest Research

• Journal of Medicinal Plant Research

• Journal of Plant Breeding and Crop Science 

• Journal of Plant Research

• Landscape and Ecological Engineering

• Molecular Ecology

• Molecular Breeding

• New Zealand Journal of Botany

• Pakistan Journal of Botany

• PeerJ

• Plant Breeding

• Plant Ecology

• Plant Ecology & Diversity

• Plant Species Biology

• PLOS ONE

• Population Ecology

• Proceedings of the Royal Society B

• Scientific Reports

• Tree Genetics & Genomes

• Trees

• Trees, Forests and People