Network visualization

Visualization in Pajek: This function writes a Pajek .net file from a MATLAB connection matrix.
- writetoPAJ.m (BU, BD networks).
- Contributor: CH.
Visualization in Connectome Viewer: The Connectome Viewer can visualize MATLAB connection matrices directly.
- visualization instructions (external link).
- Contributor: Stephan Gerhard.

Three-dimensional network visualization: This function allows to plot a three-dimensional network in MATLAB, using provided input coordinates
- adjacency_plot_und.m (BU network).
- Contributor: RB.

Grid communities: This function reorders the network according to community structure and visualizes ('grids') communities directly on the matrix.
- grid_communities.m (BU, WU, BD, WD networks).
- Contributor: RB.

Network backbone: The network backbone contains the dominant connections in the network and may be used to aid network visualization. This function computes the network backbone using a minimum-spanning-tree based algorithm.
- backbone_wu.m (BU, WU networks).
- Contributor: OS.
Matrix alignment with simulated annealing: This function uses a version of simulated annealing to align two matrices, by reordering nodes in one of the matrices.
- align_matrices.m (BU, BD, WU, WD networks).
- Contributors: YA, OS.
Node reordering with simulated annealing: This function uses a version of simulated annealing to reorder nodes in order to maximize the number of edges close to the main diagonal.
- reorder_matrix.m (BU, BD, WU, WD networks).
- Contributors: YA, OS.
Node reordering by modular structure: This function uses the network community structure to reorder nodes in order to maximize the number of edges close to the main diagonal.
- reorder_mod.m (BU, BD, WU, WD networks).
- Contributor: MR.
Node reordering: This function reorders nodes in order to maximize the number of edges close to the main diagonal.
- reorderMAT.m (BU, BD, WU, WD networks).
- Contributor: OS.

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