植物数理モデリング

Publication

Kataoka K, Fujita H§, Isa M, Gotoh S, Arasaki A, Ishida H, Kimura R*. (2021) The human EDAR 370V/A polymorphism affects tooth root morphology potentially through the modification of a reaction-diffusion system. Sci. Rep. 11, 5143.

(§ performed mathematical model analysis)

プレスリリース

https://www.nature.com/articles/s41598-021-84653-4

Fujita H*, Hayashi-Tsugane M, Kawaguchi M. (2020) Spatial regulation of resource allocation in response to nutritional availability. J. Theor. Biol. 486, 110078.

(* corresponding author)　日本語解説

https://www.sciencedirect.com/science/article/pii/S0022519319304473

Tokumoto Y, Hashimoto K, Soyano T, Aoki S, Iwasaki W, Fukuhara M, Nakagawa T, Saeki K, Yokoyama J, Fujita H, Kawaguchi M*. (2020) Assessment of plant characteristics of Polygala paniculata (Polygalaceae) for evolutionary studies of legume-rhizobia symbiosis. J. Plant Res. 133, 109-122.

2021年度JPR論文賞受賞

https://link.springer.com/article/10.1007/s10265-019-01159-x

Yonekura T, Iwamoto A, Fujita H§, Sugiyama M*. (2019) Mathematical model studies of the comprehensive generation of major and minor phyllotactic patterns in plants with a predominant focus on orixate phyllotaxis. PLoS Comput. Biol. 15(6): e1007044.

(§ supported mathematical model analysis)

プレスリリース１　プレスリリース２　プレスリリース３　プレスリリース４

https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007044

Fujita H*, Kawaguchi M. (2018) Spatial regularity control of phyllotaxis pattern generated by the mutual interaction between auxin and PIN1. PLoS Comput. Biol. 14(4),e1006065.

(* corresponding author)  プレスリリース

https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1006065

Horst RJ§, Fujita H§, Lee JS§, Rychel AL, Garrick JM, Kawaguchi M, Peterson KM, Torii KU*. (2015) Molecular framework of a regulatory circuit initiating two-dimensional spatial patterning of stomatal lineage. PLoS Genet. 11, e1005374.

(§ equal contribution)

https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1005374

Fukushima K, Fujita H§, Yamaguchi T, Kawaguchi M, Tsukaya H, Hasebe M*. (2015) Oriented cell division shapes carnivorous pitcher leaves of Sarracenia purpurea. Nat. Commun. 6, 6450.

(§ performed mathematical model analysis)  プレスリリース

https://www.nature.com/articles/ncomms7450

Fujita H*, Aoki S, Kawaguchi M. (2014) Evolutionary dynamics of nitrogen fixation in the Legume–Rhizobia symbiosis. PLoS ONE 9, e93670.

(* corresponding author)　日本語解説

https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0093670

Fujita H*, Kawaguchi M. (2013) Pattern formation by two-layer Turing system with complementary synthesis. J. Theor. Biol. 322, 33-45.

(* corresponding author)

https://www.sciencedirect.com/science/article/pii/S0022519313000271?via%3Dihub

Tameshige T, Fujita H, Watanabe K, Toyokura K, Kondo M, Tatematsu K, Matsumoto N, Tsugeki R, Kawaguchi M, Nishimura M, Okada K*. (2013) Pattern dynamics in adaxial-abaxial specific gene expression are modulated by a plastid retrograde signal during Arabidopsis thaliana leaf development. PLoS Genet. 9, e1003655.

https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1003655

Fujita H*, Kawaguchi M. (2011) Strategy for shoot proliferation in plants. Plant Sign. Behav. 6, 1851-1854.

(* corresponding author)

https://www.tandfonline.com/doi/abs/10.4161/psb.6.11.17656

Fujita H*, Toyokura K, Okada K, Kawaguchi M. (2011) Reaction-diffusion pattern in shoot apical meristem of plants. PLoS ONE 6, e18243.

(* corresponding author)

https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0018243

Ruzicka K, Strader LC, Bailly A, Yang H, Blakeslee J, Langowski L, Nejedlá E, Fujita H, Itoh H, Syono K, Hejátko J, Gray WM, Martinoia E, Geisler M, Bartel B, Murphy AS, Friml J*. (2010) Arabidopsis PIS1 encodes the ABCG37 transporter of actinic compounds including the auxin precursor indole-3-butyric acid. Proc. Natl. Acad. Sci. USA. 107, 10749-10753.

https://www.pnas.org/content/107/23/10749

Fujita H, Syono K, Machida Y, Kawaguchi M*. (2008) Morphological effects of sinefungin, an inhibitor of S-adenosylmethionine-dependent methyltransferases, on Anabaena sp. PCC 7120. Microbes Environ. 23, 346-349.

https://www.jstage.jst.go.jp/article/jsme2/23/4/23_ME08519/_article

Fujita H*, Mochizuki A. (2006) The origin of the diversity of leaf venation pattern. Dev. Dyn. 235, 2710-2721.

(* corresponding author)

https://anatomypubs.onlinelibrary.wiley.com/doi/10.1002/dvdy.20908

Fujita H*, Mochizuki A. (2006) Pattern formation of leaf veins by the positive feedback regulation between auxin flow and auxin efflux carrier. J. Theor. Biol. 241, 541-551.

(* corresponding author)

https://www.sciencedirect.com/science/article/pii/S0022519305005485

Nishimura R, Ohmori M, Fujita H, Kawaguchi M*. (2002) A Lotus basic leucine zipper protein with a RING-finger motif negatively regulates the developmental program of nodulation. Proc. Natl. Acad. Sci. USA. 99, 15206-15210.

https://www.pnas.org/content/99/23/15206

Yoshihara S, Suzuki F, Fujita H, Geng XX, Ikeuchi M*. (2000) Novel putative photoreceptor and regulatory genes required for the positive phototactic movement of the unicellular motile cyanobacterium Synechocystis sp. PCC 6803. Plant Cell Physiol. 41, 1299-1304.

https://academic.oup.com/pcp/article/41/12/1299/1812244

Fujita H*, Syono K. (1997) PIS1, a negative regulator of the action of auxin transport inhibitors in Arabidopsis thaliana. Plant J. 12, 583-595.

(* corresponding author)

https://onlinelibrary.wiley.com/doi/abs/10.1111/j.0960-7412.1997.00583.x?sid=nlm%3Apubmed

Fujita H*, Syono K. (1996) Genetic analysis of the effects of polar auxin transport inhibitors on root growth in Arabidopsis thaliana. Plant Cell Physiol. 37, 1094-1101.

(* corresponding author)

https://academic.oup.com/pcp/article/37/8/1094/1897776

日本語総説

藤田浩徳 (2016). 細胞間シグナル分子を介した形態形成のコンピューターモデリング ― 植物における自己組織的パターン形成. 生物の科学 遺伝 70, 371-376.

https://iden-online.stores.jp/items/5d0b26cc698fa50801eafe35

福島健児、藤田浩徳 (2016). 食虫植物による形態複雑化メカニズムの解明. 生物物理  56, 255-261.

https://www.biophys.jp/journal/journal_dl.php?fnm=56-5

藤田浩徳、青木誠志郎、川口正代司 (2015). 根粒共生系の進化ダイナミクス. 細胞工学別冊 進化の謎をゲノムで解く 146-155.

https://gakken-mesh.jp/book/detail/9784780909227.html