High resolution docking refinement of peptide-protein interactions 
High resolution blind ab initio peptide docking (fragment based) 
Detection of peptide-binding sites on protein surfaces 
Identification of dominant linear peptide segments at protein interfaces   (incl. cyclization) 
efficient global docking of peptide recognition motifs using FFT 
AutoPeptiDB
Curated database of peptide-protein complex structures (automated version of PeptiDB) 
Benchmark for the calibration of homology docking tools 
classifier of correct protein-protein complex orientations