32. Urinary EPCR and Dermcidin as potential novel biomarkers for severe adult OSA patients. Kohli M, Sharma SK, Upadhyay V, Varshney S, Sengupta S, Basak T, V Sreenivas. Sleep Medicine, 2019

31. Quantitative Proteomic Profiling of Extracellular Matrix and site-specific collagen post- translational modifications in an in vitro model of lung fibrosis. #Merl-Pham, J., #Basak T, Knüppel L, Ramanujam D, Behr J, Engelhardtd S, Eickelberg O, Hauck S, Vanacore RM* and Claudia A. Staab-Weijnitz*. Matrix Biology Plus, 2019. #indicates co-first authors. *Asterisk indicates co-first and co-corresponding authors.

30. The extracellular matrix receptor discoidin domain receptor 1 regulates collagen transcription by translocating to the nucleus. Chiusa M, Hu W, Liao HJ, Yan S, Borza CM, de Caestecker M, Skrypnyk NI, Fogo AB, Donnert E, Pedchenko V, Li X, Zhang MZ, Hudson BG. Basak T, Vanacore RM, Zent R, Pozzi A. Journal of the American Society of Nephrology (JASN), 2019.

29. Plasma free homocysteine levels in children with idiopathic nephrotic syndrome. Arumugam V, Saha A, Kaur M, Deepthi B, Basak T, Sengupta S, Bhat A, Batra VV, Upadhyay AD. Indian Journal of Nephrology 2019; 29 (3), 186.

28. Hydrolysis of homocysteine thiolactone results in the formation of Protein-Cys-S-S-homocysteinylation. Silla Y, Varshney S, Ray A, Basak T, Zinellu A, Sabareesh V, Carru C, Sengupta S. PROTEINS: Structure, Function, and Bioinformatics (Wiley) 2019 .

27. Proteolytic Processing of Lysyl Oxidase like-2 in the Extracellular Matrix is Required for Crosslinking of Basement Membrane Collagen IV. Lopez-Jimnez AJ, Basak T, Vanacore RM. Journal of Biological Chemistry. 2017; Sep 1, doi: 10.1074/jbc.M117.798603.

26. Endothelin 1 and endothelial dysfunction in children with idiopathic nephrotic syndrome. Arumugam V, Saha A, Kaur M, Kapoor K, Arora N, Basak T, Sengupta S, Bhatt A, Bharadwaj N, Batra V, Upadhyay A. Artery Research 2017; 18, 36-40.

25. Quantitative proteomic changes during post myocardial infarction remodelling reveals altered cardiac metabolism and Desmin aggregation in the infarct region. Datta K, Basak T, Varshney S, Sengupta S, Sarkar S. Journal of Proteomics 2017; 152, 283-299.

24. Plasma proteomic analysis of stable coronary artery disease indicates impairment of reverse cholesterol pathway. Basak T, Tanwar VS, Bharadwaj G, Bhardwaj N, Ahmad S, Garg G, Sreenivas V, Karthikeyan G, Seth S, Sengupta S. Scientific Reports (NPG) 2016; 6:28042.

23. Integrating transcriptome and proteome profiling: Strategies and applications. Kumar D, Bansal G, Narang A, Basak T, Abbas T, Dash D. Proteomics. 2016 June 25 doi: 10.1002/pmic.201600140.

22. Low holo-transcobalamin levels are prevalent in vegetarians and are associated with coronary artery disease in Indian population. Basak T, Garg G, Bhardwaj N, Tanwar VS, Seth S, Karthikeyan G, Sengupta S. Biomarkers. 2016 Mar 21:1-5.

21. Quantitative proteomics revealed novel proteins associated with molecular subtypes of breast cancer. Suman S, Basak T, Gupta P, Mishra S, Kumar V, Sengupta S, Shukla Y. J Proteomics. 2016 doi:10.1016/j.jprot.2016.07.033 2016 Oct 4;148:183-193.

20. Tyrosine Phosphorylation Modulates Mitochondrial Chaperonin Hsp60 and Delays Rotavirus NSP4-Mediated Apoptotic Signaling in Host Cells. Chattopadhyay S, Mukherjee A, Patra U, Bhowmick R, Basak T, Sengupta S, Chawla-Sarkar M. Cellular Microbiology. 2016 Sep 24 doi: 10.1111/cmi.12670.

19. Comparative proteome profiling during cardiac hypertrophy and myocardial infarction reveals altered glucose oxidation by differential activation of pyruvate dehydrogenase E1 component subunit. Mitra A, Basak T, Ahmad S, Datta K, Sengupta S, Sarkar S. J Mol Biol. 2015 June 5;427(11):2104-20.

18. Identification of differentially expressed proteins in vitamin B12 deficient individuals. Varshney S, Bhardwaj N, Basak T, Sengupta S. Journal of Practice of Cardiovascular Sciences. 2015 June 5;1(1):45.

17. Comprehensive Characterization of Glycosylation and Hydroxylation of Basement MembraneCollagen IV by High-Resolution Mass Spectrometry. Basak T, Vega-Montoto L, Zimmerman LJ, Tabb DL, Hudson BG, Vanacore RM. J Proteome Res. 2015 Nov 23 doi: 10.1021/acs.jproteome.5b00767

16. Understanding different facets of cardiovascular diseases based on model systems to human studies: A proteomic and metabolomic perspective. Basak T*, Varshney S, Akhtar S, SenguptaS*. J Proteomics. 2015 May 5. doi: 10.1016/j.jprot.2015.04.027. (*as co-corresponding author)

15. Identification of metabolic markers in coronary artery disease using an untargeted LC-MS based metabolomic approach. Basak T, Varshney S, Hamid Z, Ghosh S, Seth S, Sengupta S. J Proteomics. 2015 Mar 17. doi:10.1016/j.jprot.2015.03.011.

14. In-depth comparative proteomic analysis of yeast proteome using iTRAQ and SWATH based MS. Basak T, Bhat A, Malakar D, Pillai M, Sengupta S. Mol Biosyst. 2015 Aug;11(8):2135- 43. (Cover page article)

13. Maternal micronutrient deficiency leads to alteration in the kidney proteome in rat pups. Ahmad S*, Basak T*, Kumar KA, , Bhardwaj G, Lalitha A, Yadav DK, Chandak GR, Raghunath M, Sengupta S. J Proteomics. 2015 May 14. doi: 10.1016/j.jprot.2015.04.035. (*as joint first author)

12. Differentially expressed urinary biomarkers in children with idiopathic nephrotic syndrome. Suresh CP, Saha A, Kaur M, Kumar R, Dubey NK, Basak T, Tanwar VS, Bhardwaj G, Sengupta S, Batra VV, Datt Upadhyay A. Clin Exp Nephrol. 2015 August 25, DOI: 10.1007/s10157-015-1162-7.

11. Delineating the effect of host environmental signals on a fully virulent strain of Bacillus anthracis using an integrated transcriptomics and proteomics approach. Panda G, Basak T, Tanwer P, Sengupta S, Dos Santos VA, Bhatnagar R. J Proteomics. 2014 Jan 7. pii: S1874-3919(13)00653-2.

10. Homocysteine Metabolism in Children with Idiopathic Nephrotic Syndrome. Kundal M, Saha A, Dubey NK, Kapoor K, Basak T, Bhardwaj G, Tanwar VS,Sengupta S, Batra V, Upadhayay AD, Bhatt A. Clin Transl Sci. 2014 Jan 23. doi: 10.1111/cts.12145.

9. Matrix-assisted laser desorption/ionization mass spectrometry analysis of dimethyl arginine isomers from urine. Bhattacharya N, Singh A, Ghanate A, Phadke G, Parmar D, Dhaware D, Basak T, Sengupta S, Panchagnula V. Anal. Methods, 2014, DOI: 10.1039/C4AY00309H.

8. Cross compartment proteostasis regulation during redox imbalance induced ER stress. Maity S, Basak T, Bhat A, Bhasin N, Ghosh A, Chakraborty K, Sengupta S. Proteomics. 2014 May17, doi: 10.1002/pmic.201300449.

7. High mobility group box 1 (HMGB1) protein in human uterine fluid and its relevance in implantation.Bhutada S, Basak T, Savardekar L, Katkam RR, Jadhav G, Metkari SM, Chaudhari UK, Kumari D, Kholkute SD, Sengupta S, Sachdeva G. Hum Reprod. 2014 Apr;29(4):763-80.

6. Identification of cellular calcium binding protein calmodulin as a regulator of rotavirus A infection during comparative proteomic study. Chattopadhyay S, Basak T, Nayak MK, Bhardwaj G, Mukherjee A, Bhowmick R,Sengupta S, Chakrabarti O, Chatterjee NS, Chawla- Sarkar M. PLoS One. 2013;8(2):e56655.

5. Role of α-crystallin B as a regulatory switch in modulating cardiomyocyte apoptosis by mitochondria or endoplasmic reticulum during cardiac hypertrophy and myocardial infarction. Mitra A, Basak T, Datta K, Naskar S, Sengupta S, Sarkar S. Cell Death Dis. 2013 Apr 4;4:e582.

4. PPAR signaling pathway is a key modulator of liver proteome in pups born to vitamin B(12) deficient rats. Ahmad S, Kumar KA, Basak T, Bhardwaj G, Yadav DK, Lalitha A, Chandak GR, Raghunath M, Sengupta S. J Proteomics. 2013 Oct 8;91:297-308.

3. Polymorphisms in transcobalamin II gene is associated with coronary artery disease in Indian population. Garg G, Kumar J, Tanwar VS, Basak T, Seth S, Karthikeyan G, Sengupta S. Biomarkers. 2012 Mar;17(2):119-24.

2. Proteomic analysis of zebrafish (Danio rerio) embryos exposed to cyclosporine A. Ponnudurai RP, Basak T, Ahmad S, Bhardwaj G, Chauhan RK, Singh RA, Lalwani MK, Sivasubbu S, Sengupta S. J Proteomics. 2012 Jan 4;75(3):1004-17.

1. A systematic analysis of eluted fraction of plasma post immunoaffinity depletion: implications in biomarker discovery. Yadav AK*, Bhardwaj G*, Basak T*, Kumar D, Ahmad S, Priyadarshini R, Singh AK, Dash D, Sengupta S. PLoS One. 2011;6(9):e24442. (*as joint first author)