Publications & Media

Hungyo Kharerin, Lu Bai. “Predicting nucleosome positioning using statistical equilibrium models in budding yeast” STAR protocols, March, 2023. Article Link. 

Hengye Chen, Hungyo Kharerin, Archana Dhasarathy, Michael Kladde, Lu Bai. “Partitioned usage of chromatin remodelers by nucleosome-displacing factors.” Cell Reports, August, 2022. Article Link. 

Hungyo Kharerin, Lu Bai. “Thermodynamic modeling of genome-wide nucleosome depleted regions in yeas.” PLoS Computational Biology, January, 2021. Article Link. 

Hungyo Kharerin, Paike J Bhat, Ranjith Padinhateeri. “Role of nucleosome positioning in 3D chromatin organization and loop formation.” Journal of biosciences, January, 2020. Article Link. 

Rajesh Kumar Kar, Hungyo Kharerin, Ranjith Padinhateeri, Paike Jayadeva Bhat. “Multiple conformations of Gal3 protein drive the galactose-induced allosteric activation of the GAL genetic switch of Saccharomyces cerevisiae.” Journal of Molecular Biology, January, 2017. Article Link. 

Hungyo Kharerin, Paike J Bhat, John F Marko, Ranjith Padinhateeri. “Role of transcription factor-mediated nucleosome disassembly in PHO5 gene expression.” Scientific Reports, February, 2016. Article Link. 

Pradipta Bandyopadhyay, Hungyo Kharerin. “Monte Carlo energy landscape paving and basin paving simulation of RNA T-loop hairpin.” Chemical Physics Letters, January, 2011. Article Link.