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Apart from Google Scholar, what else do we use to find papers?

• Connected Papers--a visual tool to help find academic papers relevant to your field

• PaperBLAST--a database of protein sequences that are linked to scientific articles

• Semantic Scholar--an artificial-intelligence backed search engine for academic publications

Data Analysis and Visualization

• R Markdown Cookbook by Yihui Xie, Christophe Dervieux & Emily Riederer

• Big Book of R by Oscar Baruffa

• BOOKDOWN

  • • R for Data Science by Hadley Wickham & Garrett Grolemund

    • R Graphics Cookbook by Winston Chang

    • R Packages by Hadley Wickham

• R for Statistical Learning by David Dalpiaz

• Applied Statistics with R David Dalpiaz

• from Data to Vis by Yan Holtz

• Fundamentals of Data Visualization by Claus O. Wilke

• Effective image visualization for publications by Christopher Schmied and Helena Klara Jambor

• Data Visualization with R by Rob Kabacoff

• Circular Visualization in R by Zuguang Gu

• ComplexHeatmap Complete Reference by Zuguang Gu

• Friends Don't Let Friends Make Bad Graphs by Chenxi Li

• Biocoins

• BioCircos.js interactive circos for biological data

• COLORBREWER 2.0

Lab Tips and Protocols

• Five keys to writing a reproducible lab protocol

• Sequencing 101: DNA Extraction – Tips, Kits, & Protocols

• Extraction protocols for high-molecular weight DNA by PacBio

Databases for Plant Research

• BAR: The Bio-Analytic Resource for Plant Biology

• Phytozome--Plant Comparative Genomics portal of the Department of Energy's Joint Genome Institute

Tools and Resources for Arabidopsis Research

• TAIR: The Arabidopsis Information Resource--a database of genetic and molecular biology data for the model plant Arabidopsis thaliana

• T-DNA Express: Arabidopsis Gene Mapping Tool by the Salk Institute

• T-DNA Primer Design by the Salk Institute

• ARAPORT: Arabidopsis Information Portal

Tools and Resources for Rice Research

• UGA's Rice Genome Annotation Project Database

• RAP-DB: Rice Annotation Project Database

• Rice Genome Hub by IRD & CIRAD

• RicePanGenome Database

• funRiceGenes--comprehensive database of functionally characterized rice genes

• UC Rice Production Workshop Manual

Academic Writing

• OpenAcademics's Writing Resources

• How to write a peer review (a collection from Chiara Packard's tweet)

  • How to peer review by PLOS

  • Blake Butler's workshop on "How to review"

  • How I review a paper: Don't be a jerk and other gentle reminders by Mirya Holman

  • How to peer review for a scholarly journal (as a grad student) by Raechel N. Soicher & Teresa Ober

  • The Elements of Productive Peer Review by Matthew Wolf-Meyer

Miscellany

• Tools for Science by Arjun Raj

• A postdoc’s guide to choosing the right lab by Allison McClure

• Mentorship in life sciences: voices of mentees

• ศูนย์กลางข้อมูลเปิดภาครัฐ (Open Government Data) โดยสำนักงานพัฒนารัฐบาลดิจิทัล (องค์การมหาชน)