Bioinformatics Tools

A general link to my Github site:

https://github.com/hagenaue

Our NCBI Hackathon product:

MetaNetVar: Pipeline for applying network analysis tools for genomic variants analysis

https://github.com/NCBI-Hackathons/Network_SNP

BrainInABlender:

Analysis of microarray data to account for cell type balance:

https://github.com/hagenaue/BrainInABlender

I made a separate subpage for the cell type database used by BrainInABlender:

https://sites.google.com/a/umich.edu/megan-hastings-hagenauer/home/bioinformatics-tools/cell-type-analysis?authuser=0

Easy quantification of in situ hybridization autoradiographic images using ImageJ:

https://github.com/hagenaue/ImageJ_InSituQuantification

(Description and Usage Protocol attached below)