TF Motif Resources

The mappings below were produced by using FIMO to scan a genome for sets of  CIS-BP Single Species DNA-motifs curated in the MEME suite. Hits that met a significance less than 1e-4 were recorded and mapped to genes based on annotations downloaded from UCSC. Significant motif hits that fell within [-750,+250] of a gene's transcriptional start site were used to construct a prior regulatory network. 

Human Motif Scan (Homo sapiens; hg38): Motif Info Prior Network (RefSeq)

Mouse Motif Scan (Mus musculus; mm10):  Motif Info  Prior Network (RefSeq)

Rat Motif Scan (Rattus norvegicus; rn6):  Motif Info  Prior Network (RefSeq)

Fly Motif Scan (Drosophila melanogaster, dm6): Motif Info  Prior Network (RefSeq)

Worm Motif Scan (Caenorhabditis elegans; ce10): Motif Info Prior Network (RefSeq)

Yeast Motif Scan (Saccharomyces cerevisiae; sacCer3):  Motif Info  Prior Network (RefSeq)  Prior Network (SGD)

The mappings below were produced by using FIMO to scan the entire hg19 genome for 695 human TF-motifs selected from CisBP. Motifs were selected such that there is only one motif per TF. Hits that met a significance less than 1e-3 were recorded and mapped to genes according to different annotations. Annotations were downloaded from UCSC.

ENSEMBL Gene IDs (Based on ENST Annotations):

Promoters: [-1000,+500] bp around TSS

Gene Symbols (Based on RefSeq Annotations):

Promoters: [-1000,+500] bp around TSS

Conversion from CisBP Motif-ID to HGNC.