Important Links

• Portal for sequence analysis http://www.bioinformatics.org/
• DeepView - Swiss-PdbViewer https://spdbv.vital-it.ch/
• Biological databases and analysis handouts - https://www.mrc-lmb.cam.ac.uk/genomes/madanm/pdfs/biodbseq.pdf
• MOI Bioinformatics Toolkit https://toolkit.tuebingen.mpg.de/#/
• Model DNA http://pongor.itk.ppke.hu/dna/model_it.html#/modelit_form
• UniProt https://www.ebi.ac.uk/uniprot
• Databases ftp://ftp.sanger.ac.uk/pub/resources/opendoor/madison/2014/manuals/module7.pdf
• GenBank - http://www.ncbi.nlm.nih.gov/Genebank/
• EMBL nucleotide sequence database - http://www.ebi.ac.uk/embl
• DNA Database of Japan - http://www.ddbj.nig.ac.jp/
• Sanger Institute - http://www.sanger.ac.uk/DataSearch/
• ExPASy Proteomics Server - http://www.expasy.ch/
• SWISSPROT - http://www.expasy.ch/prot/
• Sequence Retrieval System - http://www.expasy.org/srs5/
• PROSITE - http://us.expasy.org/prosite/
• Genomes - http://www.ncbi.nih.gov/Genomes/
• TIGR - http://www.tigr.org/tdb/
• BLAST, PSI-BLAST - http://www.ncbi.nlm.nih.gov/BLAST
• InterPro - http://www.ebi.ac.uk/interpro
• Modeler - http://salilab.org/modeller/
• Pfam - http://pfam.wustl.edu/
• CATH - http://www.biochem.ucl.ac.uk/bsm/cath/cath.html
• SCOP - http://scop.mrc-lmb.cam.ac.uk/scop/
• FSSP - http://swift.cmbi.kun.nl/swift/fssp/
• TargetDB - http://targetdb.pdb.org
• DALI - http://www.ebi.ac.uk/dali/

Superpose

https://spdbv.vital-it.ch/superpos_tut.html

Motif

https://spdbv.vital-it.ch/motif3Dsearch_tut.html

Making Phi/Psi Statistics

https://spdbv.vital-it.ch/phipsi_tut.html

Manual

https://spdbv.vital-it.ch/Swiss-PdbViewerManualv3.7.pdf