Hao-Tian Lei, Zhang-Hao Wang, Bin Li, Yang Sun, Shi-Qiang Mei, Jian-Hua Yang, Liang-Hu Qu, Ling-Ling Zheng*, tModBase: deciphering the landscape of tRNA modifications and their dynamic changes from epitranscriptome data, Nucleic Acids Research, Volume 51, Issue D1, 6 January 2023, Pages D315–D327, https://doi.org/10.1093/nar/gkac1087
Liu X, Wen YZ, Huang ZL, Shen X, Wang JH, Luo YH, Chen WX, Lun ZR, Li HB, Qu LH*, Shan H*, Zheng LL*. SARS-CoV-2 causes a significant stress response mediated by small RNAs in the blood of COVID-19 patients. Mol Ther Nucleic Acids. 2022 Mar 8;27:751-762. doi: 10.1016/j.omtn.2021.12.034. PMID: 35003892; PMCID: PMC8719421.
Huang Z, Xia S, Mei S, Wen Y, Liu J, Dong C, Chen W, Yu P, Qu L, Luo Y*, Zheng L*. Integrated Analysis Reveals the Characteristics and Effects of SARS-CoV-2Maternal-Fetal Transmission. Front Microbiol. 2022 Jan 27;13:813187. doi:10.3389/fmicb.2022.813187. PMID: 35154056; PMCID: PMC8828581.
Jun-Hao Wang, Wen-Xin Chen, Shi-Qiang Mei, Yue-Dong Yang, Jian-Hua Yang*, Liang-Hu Qu*, Ling-Ling Zheng*. tsRFun: a comprehensive platform for decoding human tsRNA expression, functions and prognostic value by high-throughput small RNA-Seq and CLIP-Seq data. Nucleic Acids Res. 2021 Nov 10:gkab1023. doi: 10.1093/nar/gkab1023.
Li Cai, Jia-jia Xuan, Qiao Lin,Jun-Hao Wang,Shun Liu, Fang-Zhou Xie, Ling-Ling Zheng*, Bin Li*,Liang-hu Qu*,Jian-Hua Yang*. Pol3Base: a resource for decoding the interactome, expression, evolution, epitranscriptome and disease variations of Pol III-transcribed ncRNAs. Nucleic Acids Res. 2021 Nov 8:gkab1033. doi: 10.1093/nar/gkab1033.
Ye-Ya Tan, Yin Zhang, Bin Li, YW Ou, Shu-Juan Xie, Pei-Pei Chen, Shi-Qiang Mei, Qiao-Juan Huang, Ling-Ling Zheng*, LH Qu*. PERK Signaling Controls Myoblast Differentiation by Regulating MicroRNA Networks. Front Cell Dev Biol. 2021 May 28;9:670435.
Li-Ting Diao, Shu-Juan Xie, Pei-Jie Yu, Yu-Jia Sun, Fan Yang, Ye-Ya Tan, Shuang Tao, Ya-Rui Hou, Ling-Ling Zheng*, Zhen Dong Xiao*, Qi Zhang*. N6-methyladenine demethylase ALKBH1 inhibits the differentiation of skeletal muscle. Experimental Cell Research. 30 Jan 2021.
Shu-Rong Liu, Shu-Juan Xie, Hua-Feng Chen, Bin Li, Zhi-Rong Chen, Ye-Ya Tan, Jian-Hua Yang, Ling-Ling Zheng, Zhen Dong Xiao, Qi Zhang, Liang-Hu Qu. The functional analysis of transiently upregulated miR-101 suggests a "braking" regulatory mechanism during myogenesis. Science China-life Sciences. 27 Jan 2021.
Ling-Ling Zheng, Jing-Hua Xiong, Wu-Jian Zheng, Jun-Hao Wang, Zi-Liang Huang, Zhi-Rong Chen, Xin-Yao Sun, Yi-Min Zheng, Ke-Ren Zhou, Bin Li, Shun Liu, Liang-Hu Qu and Jian-Hua Yang. ColorCells: A database of expression, classification and functions of lncRNAs in single cells. Briefings in Bioinformatics, bbaa325, 14 December 2020.
Fangzhou Xie, Shurong Liu, Junhao Wang, Jiajia Xuan, Xiaoqin Zhang*, Lianghu Qu*, Lingling Zheng*, Jianhua Yang*. deepBase v3.0: expression atlas and interactive analysis of ncRNAs from thousands of deep-sequencing data. Nucleic Acids Research, gkaa1039, 11 November 2020.
郑凌伶，戚益军，屈良鹄. 走向国际前沿的中国RNA研究. 《中国科学:生命科学》 2019年10期
郑凌伶. “真凶密码—DNA指纹图谱制作思路”微课教案. 高校生物学教学研究, 2019,9(1):5-6.
Ling-Ling Zheng, Yi-Jun Qi, Liang-Hu Qu. Chinese RNA research leading to the international science and technology frontier. Sci Sin Vitae, 2019, 49: 1323–1335
Ling-Ling Zheng, Ke-Ren Zhou, Shun Liu, Ding-Yao Zhang, Ze-Lin Wang, Zhi-Rong Chen, Jian-Hua Yang, Liang-Hu Qu. dreamBase: DNA modification, RNA regulation and protein binding of expressed pseudogenes in human health and disease. Nucleic Acids Res. 2018 Jan 4;46(D1):D85-D91.
Ling-Ling Zheng, Kai-Wen Deng, An-Cheng Deng, Jie Wu, Jian-Hua Yang, Zhao-Rong Lun, Liang-Hu Qu. Exo-miRExplorer: A Comprehensive Resource for Exploring and Comparatively Analyzing Exogenous MicroRNAs. Front Microbiol. 2017 Feb 1;8:126. doi: 10.3389/fmicb.2017.00126.PubMed PMID: 28203233.
Ling-Ling Zheng, Wei-Lin Xu, Shun Liu, Wen-Ju Sun, Jun-Hao Li, Jie Wu, Jian-Hua Yang, Liang-Hu Qu. tRF2Cancer: A web server to detect tRNA-derived small RNA fragments (tRFs) and their expression in multiple cancers. Nucleic Acids Res. 2016 May 13. pii: gkw414.
Ling-Ling Zheng, Jun-Hao Li, Jie Wu, Wen-Ju Sun, Shun Liu, Ze-lin Wang, Hui Zhou, Jian-Hua Yang and Liang-Hu Qu. deepBase v2.0: Identification, Expression, Evolution and Function of Small RNAs, LncRNAs and Circular RNAs from Deep-sequencing Data. Nucleic Acids Res. 2015 Nov 20. pii: gkv1273.
Ling-Ling Zheng and Liang-Hu Qu. Application of microRNA gene resources in the improvement of agronomic traits in rice. Plant Biotechnol J. 2015 Apr;13(3):329-36.
Ling-Ling Zheng, Yan-Zi Wen, Jian-Hua Yang, Jian-You Liao, Peng Shao, Hui Xu, Hui Zhou, Jun-Zhi Wen, Zhao-Rong Lun, Francisco J Ayala and Liang-Hu Qu. Comparative transcriptome analysis of small noncoding RNAs in different stages of Trypanosoma brucei. RNA. 2013 Jul;19(7):863-75.
Yan-Zi Wen1, Ling-Ling Zheng1 （Both Contribution）, Jian-You Liao, Ming-Hui Wang, Yin Wei, Xue-Min Guo, Liang-Hu Qu, Francisco J. Ayala, and Zhao-Rong Lun. Pseudogene-derived small interference RNAs regulate gene expression in African Trypanosoma brucei. Proc Natl Acad Sci U S A. 2011 May 17;108(20):8345-50.
”Editor’s Choice”. Science. 2011 May 20; 332:896.
Ling-Ling Zheng and Liang-Hu Qu. Computational RNomics: structure identification and functional prediction of non-coding RNAs in silico. Science China Life Sciences. 2010 May.53(5):548-62.
Jun-Hao Li1, Sun Liu1, Ling-Ling Zheng1 （Both Contribution）, Jie Wu, Wen-Ju Sun, Ze-Lin Wang, Hui Zhou, Liang-Hu Qu, Jian-Hua Yang. Discovery of Protein-lncRNA Interactions by Integrating Large-Scale CLIP-Seq and RNA-Seq Datasets. Front Bioeng Biotechnol. 2015 Jan 14;2:88.
Wei-Lin Xu, Ye Yang, Yi-Dan Wang, Liang-Hu Qu and Ling-Ling Zheng. Computational Approaches to tRNA-Derived Small RNAs. Non-Coding RNA 2017, 3(1), 2;
Yan-Zi Wen, Ling-Ling Zheng, Liang-Hu Qu, Francisco J Ayala and Zhao-Rong Lun. Pseudogenes are not pseudo any more[J]. RNA Biology. 2012, 9(1): 27–32.
Jian-You Liao, Yan-Hua Guo, Ling-Ling Zheng, Yan Li, Wen-Li Xu, Yu-Chan Zhang, Hui Zhou, Zhao-Rong Lun, Francisco Ayala, Liang-Hu Qu,. Both endo-siRNAs and tRNA-derived small RNAs are involved in the differentiation of primitive eukaryote Giardia lamblia. Proc Natl Acad Sci U S A. 2014 Sep 30;111(39):14159-64. Sun Yat Sen Univ, Sch Life Sci, State Key Lab Biocontrol, Guangzhou 510275, Guangdong, Peoples R China.
Zhao-Rong Lun, De-Hua Lai, Yan-Zi Wen, Ling-Ling Zheng, Ji-Long Shen, Ting-Bo Yang, Wen-Liang Zhou, Liang-Hu Qu, Geoff Hide and Francisco J. Ayala. Cancer in the parasitic protozoans Trypanosoma brucei and Toxoplasma gondii. Proc Natl Acad Sci U S A. 2015 Jul 21;112(29):8835-42.
Ruo-Hong Lin, De-Hua Lai, Ling-Ling Zheng, Jie Wu, Julius Lukeš, Geoff Hide, Zao-Rong Lun. Analysis of the mitochondrial maxicircle of Trypanosoma lewisi, a neglected human pathogen. Parasit Vectors. 2015 Dec 30;8:665.
Yi-Jun Zhang, Jian-Hua Yang, Qiao-Su Shi, Ling-Ling Zheng, Jun Liu, Hui Zhou, Hui Zhang, Liang-Hu Qu. Rapid Birth-and-Death Evolution of Imprinted snoRNAs in the Prader-Willi Syndrome Locus: Implications for Neural Development in Euarchontoglires. PLoS One. 2014 Jun 19;9(6):e100329.
Ke-Ren Zhou, Shun Liu, Wen-Ju Sun, Ling-Ling Zheng, Hui Zhou, Jian-Hua Yang and Liang-Hu Qu. ChIPBase v2.0: decoding transcriptional regulatory networks of non-coding RNAs and protein-coding genes from ChIP-seq data. Nucl. Acids Res. October 23, 2016
Jun-Zhi Wen, Jian-You Liao, Ling-Ling Zheng, Hui Xu, Jian-Hua Yang, Dao-Gang Guan, Si-Min Zhang, Hui Zhou, Liang-Hu Qu. A Contig-Based Strategy for the Genome-Wide Discovery of MicroRNAs without Complete Genome Resources PLoS One. 2014 Feb 7;9(2):e88179.
Peng Shao, Jian-You Liao, Dao-Gang Guan, Jian-Hua Yang, Ling-Ling Zheng, Qing Jing, Hui Zhou and Liang-Hu Qu. Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation[J]. RNA Biology. 2012 Feb;9(2):212-27.
Bo-Wei Han, Dan-Dan Feng, Zhi-Gang Li2, Xue-Qun Luo, Hua Zhang, Xiao-Juan Li, Xing-Ju Zhang, Ling-Ling Zheng, Cheng-Wu Zeng, Kang-Yu Lin, Peng Zhang, Ling Xu and Yue-Qin Chen. A set of miRNAs that involve in the pathways ofdrug resistance and leukemic stem-cell differentiation is associated with therisk of relapse and glucocorticoid response in childhood ALL. Hum Mol Genet. 2011Dec 15;20(24):4903-15.
Ling-Ling Zheng, Jian-You Liao, Yan-Zi Wen, Geoff Hide*, Liang-Hu Qu* and Zhao-Rong Lun*.Different Types of Small RNAs in Protozoa. Springer.2016.(ISBN: 978-3-319-39494-7).
Ling-Ling Zheng, Jing-Hua Xiong, Bai Yang, Zhi-Rong Chen, Yi-Min Zheng, Ke-Ren Zhou, Jian-Hua Yang and Liang-Hu Qu. Deeply Exploit The Expression and Function of Protein-Coding and Non-Coding RNAs in Single-Cell RNA-Seq Datasets. 2018, 11th Berlin Late Summer Meeting: Computational and Molecular Experimental Biology Meet, Berlin, Germany.
Ling-Ling Zheng and Liang-Hu Qu. A Pan-cancer Analysis of the Expression and Clinical Relevance of tRNA-derived small RNAs (tsRNAs). 2018, The tenth National Symposium on Ribonucleic Acid (RNA), Ningbo, China
Ling-Ling Zheng and Liang-Hu Qu. High-throughput analysis of small RNAs reveals the existence and dramatic changes of ncRNAs during different Trypanosoma brucei developmentally regulation stages. 2010, The Sixth National Symposium on Ribonucleic Acid (RNA), Guangzhou, China
郑凌伶，屈良鹄 计算RNA组学分析平台在真核生物非编码RNA及比较转录组学研究中的应用.2012，The Seventh National Symposium on Ribonucleic Acid (RNA), Chengdu, China
郑凌伶：A Pan-cancer Analysis of the Expression and Clinical Relevance of tRNA-derived small RNAs (tsRNAs). 2018年6月15-18日，宁波
郑凌伶：细胞特异性的lncRNA及其介导的调控网络. 第一届全国核糖核酸青年学术会议，2019,5月11-12日，北京
郑凌伶：基于多维高通量组学数据揭示病原体-宿主之间的相互作用网络. 第二届全国核糖核酸青年学术会议，2021,1月8-9日，广州
郑凌伶：网络教学与传统教学各自的优势及整合策略的探索。高校生命科学课程教学系列报告会，2015，广州
郑凌伶：微风新燕斗清奇——浅析微课设计制作思路。第十三届生命科学课程报告论坛，2018，武汉
1. 2018.4.28：郑凌伶，广东顺德勒流中学（200多人），讲授“真凶密码：DNA指纹图谱制作与分析”
2. 2018.12.1：郑凌伶，广东梅州东山中学（100多人），讲授“真凶密码：DNA指纹图谱制作与分析”
3. 2018.12.2：郑凌伶，广东梅州宪梓中学（50多人），讲授讲授“真凶密码：DNA指纹图谱制作与分析”
4. 2019.4.20：郑凌伶，广州华南师范大学附属中学，讲授“真凶密码：DNA指纹图谱制作与分析”