Papers
For up-to-date references see my Google Scholar Page
Selective inference and multiple comparisons
I. Faran, M. Peer, S. Arzy, and Y. Benjamini (Preprint 2021), Detecting Differences Between Correlation-Matrix Populations due to Single-variable Perturbations, with Application to Resting State fMRI [Arxiv]
Y. Benjamini, J. Taylor, R. A. Irizarry (2018), Selection corrected statistical inference for region detection with high-throughput assays, JASA. [journal, pdf, software]
K. D. Korthauer, S. Chakraborty, Y. Benjamini, and R. A. Irizarry (2018), Detection and accurate False Discovery Rate control of differentially methylated regions from Whole Genome Bisulfite Sequencing, Biostatistics. [journal, pdf, software]
A. Meir, Y. Benjamini (Preprint 2019), Valid Inference for selected regions of interest with application to fMRI studies. [pdf]
Multi-label classification
Y. Slavutsky, Y. Benjamini (2021), Predicting classification accuracy when adding more classes, ICLR [arXiv, openreview]
J. D. Rosenblatt, Y. Benjamini, R. Gilron, R. Mukamel, J. J. Goeman (2019), Better-Than-Chance classification for signal detection, Biostatistics [journal, Arxiv]
C. Y. Zheng, R, Achanta, Y. Benjamini (2018), Extrapolating expected accuracies for multi-class classification, JMLR [journal, git]
C. Y. Zheng, Y. Benjamini, (preprint 2016) Estimating mutual information in high dimensions via classification error [Arxiv, software]
Prediction models for scientific applications
E. Margulis, Y. Slavutsky, T. Lang, M. Behrens, Y. Benjamini, M.Y. Niv (Preprint) BitterMatch: Recommendation systems for matching molecules with bitter taste receptors [Biorxiv]
Y. Benjamini and B. Yu (2012), The shuffle estimator for explainable variance in fMRI experiments, Annals of Applied Statistics [journal, pdf, software].
S. Nishimoto, A.T. Vu, T. Naselaris, Y. Benjamini, B. Yu and J.L. Gallant (2011) Reconstructing visual experiences from brain activity evoked by natural movies, Current Biology. [journal, pdf]
J. Jia, Y. Benjamini, C. Lim, G. Raskutti, B. Yu, (2010) Comments on Envelope Models, Comment in Statistica Sinica [journal, pdf].
Representation of natural images in V4. (Preprint 2012).
Bioinformatics
G.D. Evrony, E. Lee, B.K. Mehta, Y. Benjamini, R.M. Johnson, et al. (2015). Cell lineage analysis in human brain using endogenous retro-elements. Neuron [journal, pdf]
G.D. Evrony, E. Lee, B.K. Mehta, Y. Benjamini, R.M. Johnson, et al. (2015). Cell lineage analysis in human brain using endogenous retro-elements. Neuron [journal, pdf]
D. Chandrananda, N. Thorne, D. Ganesamoorth, D. Bruno, Y. Benjamini, T.P. Speed, et al. (2014) Investigating and correcting plasma DNA sequencing coverage bias to enhance aneuploidy discovery PLOS ONE [journal].
Y. Benjamini and T.P. Speed (2012), Summarizing and correcting the GC content bias in high-throughput sequencing. NAR [journal, pdf, software]
Miscellaneous
R. Kadmon and Y. Benjamini ,(2006), Effects of Productivity and Disturbance on Species Richness: A Neutral Model American Naturalist [journal, pdf]
N. Karni, H. Klein, K. Asseo, Y. Benjamini, S. Israel, M. Nimri, K. Olstein R. Nir-Paz, A. Hershko, M. Muszkat, M.Y. Niv (2021), Self-rated smell ability enables highly specific predictors of COVID-19 status: a case control study in Israel. Open Forum Infectious Diseases [journal, pdf, preprint].
H. Klein, K. Asseo, N. Karni, Y. Benjamini, R. Nir-Paz, M. Muszkat, S. Israel, M. Y. Niv (2021),
Onset, duration and unresolved symptoms, including smell and taste changes, in mild COVID-19 infections. A cohort study in Israeli patients. Clinical Microbiology and Infection.