Sachiko Toda-Matsunaga, Yusuke Toda, Ryosuke Mega, Shota Tadano, Megumi Alyza, Yuji Yamasaki, Kinya Akashi, Hisashi Tsujimoto. "Wheat seeds exposed to heat during formation can germinate at high temperatures." Frontiers in Plant Science, 16:1539926. https://doi.org/10.3389/fpls.2025.1539926
Tung Dang, Yushiro Fuji, Kie Kumaishi, Erika Usui, Shungo Kobori, Takumi Sato, Megumi Narukawa, Yusuke Toda, Kengo Sakurai, Yuji Yamasaki, Hisashi Tsujimoto, Masami Yokota Hirai, Yasunori Ichihashi, Hiroyoshi Iwata. "I-SVVS: integrative stochastic variational variable selection to explore joint patterns of multi-omics microbiome data." Briefings in Bioinformatics, 26(3), bbaf132. https://doi.org/10.1093/bib/bbaf132
Yusuke Toda, Goshi Sasaki, Yoshihiro Ohmori, Yuji Yamasaki, Hirokazu Takahashi, Hideki Takanashi, Mai Tsuda, Hiromi Kajiya-Kanegae, Hisashi Tsujimoto, Akito Kaga, Masami Hirai, Mikio Nakazono, Toru Fujiwara, Hiroyoshi Iwata. "Reaction norm for genomic prediction of plant growth: modeling drought stress response in soybean." Theoretical and Applied Genetics, 137:77. https://doi.org/10.1007/s00122-024-04565-5
Yusuke Toda, Yasushi Ishigooka, Mayumi Yoshimoto, Takahiro Takimoto, Tsuneo Kuwagata, David Makowski, Toshihiro Hasegawa. "Revealing the spatial characteristics of rice heat exposure in Japan through panicle temperature analysis." Journal of Agricultural Meteorology, 80(3), 79-89. https://doi.org/10.2480/agrmet.D-24-00002
Maud Delattre, Yusuke Toda, Jessica Tressou, Hiroyoshi Iwata. "Modeling soybean growth: A mixed model approach." PLoS Computational Biology, 20(7), e1011258. https://doi.org/10.1371/journal.pcbi.1011258 https://doi.org/10.1101/2023.06.13.544713
Mashiro Okada, Clément Barras, Yusuke Toda, Kosuke Hamazaki, Yoshihiro Ohmori, Yuji Yamasaki, Hirokazu Takahashi, Hideki Takanashi, Mai Tsuda, Masami Yokota Hirai, Hisashi Tsujimoto, Akito Kaga, Mikio Nakazono, Toru Fujiwara, Hiroyoshi Iwata. "High-throughput phenotyping of soybean biomass: conventional trait estimation and novel latent feature extraction using UAV remote sensing and deep learning models." Plant Phenomics, 6, 0244. https://doi.org/10.34133/plantphenomics.0244
Kengo Sakurai, Yusuke Toda, Kosuke Hamazaki, Yoshihiro Ohmori, Yuji Yamasaki, Hirokazu Takahashi, Hideki Takanashi, Mai Tsuda, Hisashi Tsujimoto, Akito Kaga, Mikio Nakazono, Toru Fujiwara, Hiroyoshi Iwata. "Random regression for modeling soybean plant response to irrigation changes using time-series multispectral data." Frontiers in Plant Science, 14:1201806. https://doi.org/10.3389/fpls.2023.1201806
Tung Dang, Kie Kumaishi, Erika Usui, Shungo Kobori, Takumi Sato, Yusuke Toda, Yuji Yamasaki, Hisashi Tsujimoto, Yasunori Ichihashi, Hiroyoshi Iwata. "Stochastic variational variable selection for high-dimensional microbiome data." Microbiome, 10:236. https://doi.org/10.1186/s40168-022-01439-0
Khuynh The Bui, Toshiya Naruse, Hideki Yoshida, Yusuke Toda, Yoshihiro Omori, Mai Tsuda, Akito Kaga, Yuji Yamasaki, Hisashi Tsujimoto, Yasunori Ichihashi, Masami Hirai, Toru Fujiwara, Hiroyoshi Iwata, Makoto Matsuoka, Hirokazu Takahashi and Mikio Nakazono. "Effects of irrigation on root growth and development of soybean: A 3-year sandy field experiment." Frontiers in Plant Science, 13:1047563. https://doi.org/10.3389/fpls.2022.1047563
Kie Kumaishi, Erika Usui, Kenta Suzuki, Shungo Kobori, Takumi Sato, Yusuke Toda, Hideki Takanashi, Satoshi Shinozaki, Munehiro Noda, Akiko Takakura, Kayoko Matsumoto, Yuji Yamasaki, Hisashi Tsujimoto, Hiroyoshi Iwata, Yasunori Ichihashi. "High throughput method of 16S rRNA gene sequencing library preparation for plant root microbial community profiling." Scientific Reports, 12, 19289. https://doi.org/10.1038/s41598-022-23943-x
Kengo Sakurai, Yusuke Toda, Hiromi Kajiya-Kanegae, Yoshihiro Ohmori, Yuji Yamasaki, Hirokazu Takahashi, Hideki Takanashi, Mai Tsuda, Hisashi Tsujimoto, Akito Kaga, Mikio Nakazono, Toru Fujiwara, Hiroyoshi Iwata. "Time-series multispectral imaging in soybean for improving biomass and genomic prediction accuracy." The Plant Genome, 2022;e20244. https://doi.org/10.1002/tpg2.20244
Yusuke Toda, Goshi Sasaki, Yoshihiro Omori, Yuji Yamasaki, Hirokazu Takahashi, Hideki Takanashi, Mai Tsuda, Hiromi Kajiya-Kanegae, Raul Lopez-Lozano, Hisashi Tsujimoto, Akito Kaga, Mikio Nakazono, Toru Fujiwara, Frederic Baret, Hiroyoshi Iwata. "Genomic prediction of green fraction dynamics in soybean using UAV observations." Frontiers in Plant Science, 13:828864. https://doi.org/10.3389/fpls.2022.828864
Sachiko Matsunaga, Yuji Yamasaki, Ryosuke Mega, Yusuke Toda, Kinya Akashi, and Hisashi Tsujimoto. "Metabolome Profiling of Heat Priming Effects, Senescence, and Acclimation of Bread Wheat Induced by High Temperatures at Different Growth Stages." International Journal of Molecular Science, 22(23), 13139. https://doi.org/10.3390/ijms222313139
Yusuke Toda, Akito Kaga, Hiromi Kajiya-Kanegae, Tomohiro Hattori, Shuhei Yamaoka, Masanori Okamoto, Hisashi Tsujimoto, Hiroyoshi Iwata. "Genomic prediction modeling of soybean biomass using UAV-based remote sensing and longitudinal model parameters." The Plant Genome, e20157. 2021. http://doi.org/10.1002/tpg2.20157
Sachiko Matsunaga, Yuji Yamasaki, Yusuke Toda, Ryosuke Mega, Kinya Akashi, Hisashi Tsujimoto. “Stage-Specific Characterization of Physiological Response to Heat Stress in the Wheat Cultivar Norin 61.” International Journal of Molecular Science, 22(13): 6942. 2021. https://doi.org/10.3390/ijms22136942
Yusuke Toda, Hitomi Wakatsuki, Toru Aoike, Hiromi Kajiya-Kanegae, Masanori Yamasaki, Takuma Yoshioka, Kaworu Ebana, Takeshi Hayashi, Hiroshi Nakagawa, Toshihiro Hasegawa, Hiroyoshi Iwata. “Predicting biomass of rice with intermediate traits: modeling method combining crop growth models and genomic prediction models.” PLoS ONE 15(6): e0233951. 2020. https://doi.org/10.1371/journal.pone.0233951