Y. Zhang*, L. Debaize*, A. Langenbucher, J. Weekes, I. Vogiatzi, T. P. Miettinen, M. Zhang, E. Sumpena, H. Liu, S. M. Duquette, L. Hackett, J. Zhang, S. Baghiyan, R. A. Redd, M. Aryee, M. S. Davids, A. I. Kim, C. E. Ryan, D. M. Weinstock, S. R. Manalis, M. A. Murakami. Integrating Single-Cell Biophysical and Transcriptomic Features to Resolve Functional Heterogeneity in Mantle Cell Lymphoma. bioRxiv [Preprint] (2025). (under review at Science Advances) 

J. Yu*, Y. Zhang*# , S. M. Duquette, G. L. Yee, T. Dinter, T. R. Usherwood, W. Wu, T. Miettinen, S. Spranger, S. R. Manalis, Bimodal cell mass distribution separates CD8+ T cells into two distinct types with divergent differentiation dynamics. bioRxiv [Preprint] (2024). (under review at Nature BME)

Y. Zhang, P. Zhang, L. Chen, A. Kaushik, K. Hu, T.-H. Wang, ddRFC: A scalable multiplexed droplet digital nucleic acid amplification test platform. Biosens. Bioelectron. (2020).

Y. Zhang, L. Chen, K. Hsieh, T.-H. Wang, Ratiometric Fluorescence Coding for Multiplex Nucleic Acid Amplification Testing. Anal. Chem. (2018). 

C. W. Beh*, Y. Zhang*, Y.-L. Zheng, B. Sun, T.-H. Wang, Fluorescence spectroscopic detection and measurement of single telomere molecules. Nucleic Acids Res. (2018).

Y. Zhang, Y. Zhang, J. M. Burke, K. Gleitsman, S. M. Friedrich, K. J. Liu, T.-H. Wang, A Simple Thermoplastic Substrate Containing Hierarchical Silica Lamellae for High Molecular Weight DNA Extraction. Adv. Mater. (2016). 

T. R. P. Ii, Y. Zhang, T. H. Wang, Quantum dots in diagnostics and detection: principles and paradigms. Analyst (2014) 

Y. A. Elbanna, M. Tello-Lafoz, A. Holland, Y. Zhang, J. Kwak, Z. Wang, A. Yakimov, M. Dada, S. Vayner, S. M. Duquette, Y. H. Kim, T. A. Bale, B. Y. Winer, K. Yu, J. Massagué, J. Lee, O. Barzilai, S. R. Manalis and M. Huse. Mechanoimmunological Control of Metastatic Site Selection. bioRxiv [Preprint] (2025). (submitted)

P. S. Winter, M. L. Ramseier, A. W. Navia, S. Saksena, H. Strouf, N. Senhaji, A. DenAdel, M. Mirza, H. H. An, L. Bilal, P. Dennis, C. S. Leahy, K. Shigemori, J. Galves-Reyes, Y. Zhang, F. Powers, N. Mulugeta, A. J. Gupta, N. Calistri, A. V. Scoyk, K. Jones, H. Liu, K. E. Stevenson, S. Ren, M. R. Luskin, C. P. Couturier, A. P. Amini, S. Raghavan, R. J. Kimmerling, M. M. Stevens, L. Crawford, D. M. Weinstock, S. R. Manalis, A. K. Shalek, M. A. Murakami, Mutation and cell state compatibility is required and targetable in Ph+ acute lymphoblastic leukemia minimal residual disease. bioRxiv [Preprint] (2024). (submitted)

W. Wu, S. H. Ishamuddin, T. W. Quinn, S. Yerrum, Y. Zhang, L. L. Debaize, P.-L. Kao, S. M. Duquette, M. A. Murakami, M. Mohseni, K.-H. Chow, T. P. Miettinen, K. L. Ligon, S. R. Manalis, High-throughput single-cell density measurements enable dynamic profiling of immune cell and drug response from patient samples. Nat. Biomed. Eng. (2025). 

A. B. Miller, F. H. Rodriguez, A. Langenbucher, L. Lin, C. Bray, S. Duquette, Y. Zhang, D. Goulet, A. A. Lane, D. M. Weinstock, M. T. Hemann, S. R. Manalis, Leukemia circulation kinetics revealed through blood exchange method. Commun. Biol. (2024).

J. S. Park, T. Pisanic, Y. Zhang, T.-H. Wang, Ligation-Enabled Fluorescence-Coding PCR for High-Dimensional Fluorescence-Based Nucleic Acid Detection. Anal. Chem. (2021).

J. Lee, M. E. Robinson, N. Ma, D. Artadji, M. A. Ahmed, G. Xiao, T. Sadras, G. Deb, J. Winchester, K. N. Cosgun, IFITM3 functions as a PIP3 scaffold to amplify PI3K signalling in B cells. Nature (2020).

P. Athamanolap, K. Hsieh, C. M. O’Keefe, Y. Zhang, S. Yang, T.-H. Wang, Nanoarray Digital Polymerase Chain Reaction with High-Resolution Melt for Enabling Broad Bacteria Identification and Pheno–Molecular Antimicrobial Susceptibility Test. Anal. Chem. (2019).

F. Tang, Y. Zhang, J. Zhang, J. Guo, R. Liu, Assessment of the efficacy of laser hyperthermia and nanoparticle-enhanced therapies by heat shock protein analysis. AIP Adv. (2014).

D. L. Zhang, D. Y. Song, D. T. Fujita, Y. Zhang, P. M. Chen, P. T.-H. Wang, Large Enhancement of Quantum Dot Fluorescence by Highly Scalable Nanoporous Gold. Adv. Mater. (2013).

T. Wang, Y. Zhang, G. Huang, C. Wang, L. Xie, L. Ma, Z. Li, X. Luo, H. Tian, Q. Li, X. Li, Z. Lv, X. Bao, Detect early stage lung cancer by a LAMP microfluidic chip system with a real-time fluorescent filter processor. Sci. China Chem. (2012).