Benchmarking

Benchmarking of the Vaxi-DL pathogen models with other existing PVC prediction tools. The four pathogen models of the Vaxi-DL namely bacterial, protozoan, and viral were benchmarked against known PVC prediction tools such as Vaxign-ML [1] and VaxiJen [2]. The independent datasets used for benchmarking consisted of 57 known bacterial antigens (25 Gram⁺ and 32 Gram^-), 14 protozoan, 7 viral antigens that were manually curated.

The dataset used for benchmarking consisted of 7 known viral PVCs that were manually curated.

The dataset used for benchmarking consisted of 14 known protozoan PVCs that were manually curated.

References