Original Articles
Wappner M., Uriu K., Oates A.C., Morelli L.G. (2025) Multiple Notch ligands in the synchronization of the segmentation clock. Phys. Rev. E 112(4) 044417
Uriu K., Morelli L.G. (2025) Statistical description of mobile oscillators in embryonic pattern formation. Phys. Rev. E 111, 024407
Uriu K., Hernandez-Sanchez J.P., Kojima S. (2024) Impacts of the feedback loop between sense-antisense RNAs in regulating circadian rhythms. NPJ Syst. Biol. Appl. 10(1) 119
Yabe T., Uriu K., Takada S. (2023) Ripply suppresses Tbx6 to induce dynamic-to-static conversion in somite segmentation. Nat. Commun. 14(1) 2115-2115
Kitaguchi Y., Tei H., Uriu K. (2022) Cell size homeostasis under the circadian regulation of cell division in cyanobacteria. J. Theor. Biol. 553 111260
Uriu K., Tei H. (2021) Complementary phase responses via functional differentiation of dual negative feedback loops. PLOS Comp. Biol. 17 e1008774
Uriu K., Liao B-K, Oates A.C., Morelli L.G. (2021) From local resynchronization to global pattern recovery in the zebrafish segmentation clock. eLife 10 e61358
Petrungaro G., Uriu K., Morelli L.G. (2019) Synchronization dynamics of mobile oscillators in the presence of coupling delays. Phys. Rev. E 99 062207
Uriu K., Tei H. (2019) A saturated reaction in repressor synthesis creates a daytime dead zone in circadian clocks. PLOS Compt. Biol. 15 e1006787
Seto M., Uriu K., Kawaguchi I., Yokomizo H. (2018) Assessment of instructions on protection against food contaminated with radiocesium in Japan in 2011. Risk Analysis 38 1154-1168
Petrungaro G., Uriu K., Morelli L.G. (2017) Mobility-induced persistent chimera states. Phys. Rev. E 96 062210
Uriu K., Tei H. (2017) Feedback loops interlocked at competitive binding sites amplify and facilitate genetic oscillations. J. Theor. Biol. 428 56-64
Uriu K., Bhavna R., Oates A.C., Morelli L.G. (2017) A framework for quantification and physical modeling of cell mixing applied to oscillator synchronization in vertebrate somitogenesis. Biol. Open 6 1235-1244
Bhavna R., Uriu K., Valentin G., Tinevez J.Y., Oates A.C. (2016) Object segmentation and ground truth in 3D embryonic imaging. PLOS One 11 e0150853
Seto M., Uriu K. (2015) Sample size allocation for food item radiation monitoring and safety inspection. Risk Analysis 35 409-422
Uriu K., Morelli L.G. (2014) Collective cell movement promotes synchronization of coupled genetic oscillators. Biophys. J. 107, 514-526
Uriu K., Ares S., Oates A.C., Morelli L.G. (2013) Dynamics of mobile coupled phase oscillators. Phys. Rev. E 87, 032911
Uriu K., Ares S., Oates A.C., Morelli L.G. (2012) Optimal cellular mobility for synchronization arising from the gradual recovery of intercellular interactions. Phys. Biol. 9, 036006
Uriu K., Morishita Y., Iwasa Y. (2010) Random cell movement promotes synchronization of the segmentation clock. Proc. Natl. Acad. Sci. USA 107, 4979-4984
Uriu K., Morishita Y., Iwasa Y. (2010) Synchronized oscillation of the segmentation clock gene in vertebrate development. J. Math. Biol. 61, 207-229
Uriu K., Morishita Y., Iwasa Y. (2009) Traveling wave formation in vertebrate segmentation. J. Theor. Biol. 257, 385-396
Uriu K., Iwasa Y. (2007) Turing pattern formation with two kinds of cells and a diffusive chemical. Bull. Math. Biol. 69, 2515-2536
Review Articles
Uriu K., Morelli L.G. (2023) Orchestration of tissue shape changes and gene expression patterns in development. Semin. Cell Dev. Biol. 147:24-33
Petrungaro G., Morelli L.G., Uriu K. (2018) Information flow in the presence of cell mixing and signaling delays during embryonic development. Semin. Cell Dev. Biol. 93 26-35
Uriu K., Morelli L.G. (2017) Determining the impact of cell mixing on signaling during development. Dev. Growth & Differ. 59 351-368
Uriu K. (2016) Genetic oscillators in development. Dev. Growth & Differ. 58 16-30
Uriu K., Morelli L.G., Oates A.C. (2014) Interplay between intercellular signaling and cell movement in development. Semin. Cell Dev. Biol. 35, 66-72
Morelli L.G., Uriu K., Ares S., Oates A.C. (2012) Computational approaches to developmental patterning. Science 336, 187-191
Reviews in Japanese / 日本語解説記事
瓜生耕一郎 (2022) 位相応答曲線の数理解析. 時間生物学 Vol. 28 No. 2