Department of Physics, Graduate School of Science, Nagoya University
TB Lab / Theoretical Biophysics Laboratory
Research Interests
(1) Protein folding problem and protein structure predictions are long-standing unsolved problems in theoretical biophysics. Even with the fastest supercomputer available, it is extremely difficult to succeed in folding even the smallest protein into its native structure by computer simulations. We study these problems by powerful molecular simulation techniques.
(2) We are also studying the molecular mechanisms which allow biomoleuces to carry out efficiently their biological functions such as photosynthesis and vision. We examine these mechanisms by means of electronic state theories and molecular simulations.
(3) Non-equilibrium phenomena such as electron transfer reactions and solvation dynamics in polar solutions are also investigated and compared with equivalent real biological systems, both using computer simulations and analytical theory.
Key words : Protein folding in water, photoenergy conversion, and photosignal transduction
Members of TB Laboratory (2021)
LINK
Nagoya University
Nagoya University Graduate School of Science
Nagoya University Department of Physics
* Legacy of The Department of Physics
Nagoya University Library
Society
The Biophysical Society of Japan
PDB
Protein Data Bank at Brookhaven National Laboratories
CATH(Class-Architecture-Topology-Homologous superfamily)
SCOP(Structural Classical of Proteins)
Molecular Visualization Software
VMD (Visual Molecular Dynamics)
MolScript
Online Journals
Photochemistry and Photobiology
The Journal of Chemical Physics
Proceedings of the National Academy of Sciences
Physical Review Online Archive
The Journal of Physical Chemistry A
The Journal of Physical Chemistry B
ACCESS
Science Hall 5th floor, Higashiyama Campus, Nagoya University
Map of Nagoya University(D2-8)
Nagoyadaigaku Station, Meijo-Line, Nagoya Subway
ADDRESS
TB Laboratory
Department of Physics, Graduate School of Science, Nagoya University
Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8602, JAPAN
TEL/FAX: +81(0)52-789-3528
TB Laboratory
Department of Physics, Graduate School of Science, Nagoya University
Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8602, JAPAN
E-mail: okamoto{a}tb.phys.nagoya-u.ac.jp
yamato{a}tb.phys.nagoya-u.ac.jp
akimura{a}tb.phys.nagoya-u.ac.jp