Mokodongan DF, Utama IV, Nagano AJ, Woo SP, Tan SH, Ansai S, Takehana Y, Yamahira K (2025) Rediscovery of Oryzias hubbsi with notes on its reproductive isolation with O. javanicus. Ichthyological Research 72:252–258.
Takehana Y, Taniguchi R, Kanemura K, Kobayashi T (2024) Gsdf is not indispensable for male differentiation in the medaka species Oryzias hubbsi. Biochemical and Biophysical Research Communications 724:150227.
Kitano J, Ansai S, Takehana Y, Yamamoto Y (2024). Diversity and convergence of sex-determination mechanisms in teleost fish. Annual Review of Animal Biosciences 12:233-259.
Rusni S, Sassa M, Takagi T, Kinoshita M, Takehana Y, Inoue K (2022) Establishment of cytochrome P450 1a gene-knockout Javanese medaka, Oryzias javanicus, which distinguishes toxicity modes of the polycyclic aromatic hydrocarbons, pyrene and phenanthrene. Marine Pollution Bulletin 178:113578.
Yamahira K, Ansai S, Kakioka R, Yaguchi H, Kon T, Montenegro J, Kobayashi H, Fujimoto S, Kimura R, Takehana Y, Setiamarga DHE, Takami Y, Tanaka R, Maeda K, Tran HD, Koizumi N, Morioka S, Bounsong V, Watanabe K, Musikasinthorn P, Tun S, Yun LKC, Masengi KWA, Anoop VK, Raghavan R, Kitano J (2021) Mesozoic origin and ‘out-of-India’ radiation of ricefishes (Adrianichthyidae). Biology Letters 17:20210212.
Myosho T, Hattori M, Yamamoto J, Toda M, Okamura T, Onishi Y, Takehana Y, Kobayashi T (2021) Effects of synthetic sex steroid hormone exposures on gonadal sex differentiation and dynamics of a male-related gene, Gonadal soma-derived factor (Gsdf) and an estrogen up-regulated gene, Choriogenine-H (ChgH) gene expression in the euryhaline Javafish medaka, Oryzias javanicus, based on genetic sexes. Chemosphere 274:129893.
Rusni S, Sassa M, Takehana Y, Kinoshita M, Inoue K (2020) Correlation between cytochrome P450 1A (cyp1A) mRNA expression and ambient phenanthrene and pyrene concentration in Javanese medaka, Oryzias javanicus. Fisheries Science 86:605-613.
Takehana Y, Zahm M, Cabau C, Klopp C, Roques C, Bouchez O, Donnadieu C, Barrachina C, Journot L, Kawaguchi M, Yasumasu S, Ansai S, Naruse K, Inoue K, Shinzato C, Schartl M, Guiguen Y, Herpin A (2020) Genome sequence of the euryhaline Javafish medaka, Oryzias javanicus: a small aquarium fish model for studies on adaptation to salinity. G3: Genes, Genomes, Genetics 10:907-915.
Lee BY, Kim MS, Choi BS, Nagano AJ, Au DWT, Wu RSS, Takehana Y, Lee JS (2019) Construction of high-resolution RAD-seq based linkage map, anchoring reference genome, and QTL mapping of the sex chromosome in the marine medaka Oryzias melastigma. G3: Genes, Genomes, Genetics 9:3537-3545.
Ishikawa A, Kabeya N, Ikeya K, Kakioka R, Cech JN, Osada N, Leal MC, Inoue J, Kume M, Toyoda A, Tezuka A, Nagano AJ, Yamasaki YY, Suzuki Y, Kokita T, Takahashi H, Lucek K, Marques D, Takehana Y, Naruse K, Mori S, Monroig O, Ladd N, Schubert CJ, Matthews B, Peichel CL, Seehausen O, Yoshizaki G, Kitano J (2019) A key metabolic gene for recurrent freshwater colonization and radiation in fishes. Science 364:886-889.
Nakayama T, Shimmura T, Shinomiya A, Okimura K, Takehana Y, Furukawa Y, Shimo T, Senga T, Nakatsukasa M, Nishimura T, Tanaka M, Okubo K, Kamei Y, Naruse K, Yoshimura T (2019) Seasonal regulation of the lncRNA LDAIR modulates self-protective behaviours during the breeding season. Nature Ecology & Evolution 3:845-852.
Ohde T, Takehana Y, Shiotsuki T, Niimi T (2018) CRISPR/Cas9-based heritable targeted mutagenesis in Thermobia domestica: A genetic tool in an apterygote development model of wing evolution. Arthropod Structure & Development 47:362-369.
Kimura T, Takehana Y, Naruse K (2017) pnp4a is the causal gene of the medaka iridophore mutant guanineless. G3: Genes, Genomes, Genetics 7:1357-1363.
Sagai T, Amano T, Maeno A, Kimura T, Nakamoto M, Takehana Y, Naruse K, Okada N, Kiyonari H, Shiroishi T (2017) Evolution of Shh endoderm enhancers during morphological transition from ventral lungs to dorsal gas bladder. Nature Communications 8:14300.
Takehana Y, Sakai M, Narita T, Sato T, Naruse K, Sakaizumi M (2016) Origin of the boundary populations in medaka (Oryzias latipes species complex). Zoological Science 33:125-131.
Takehana Y, Matsuda Y, Ikuta J, Kryukov AP, Sakaizumi M (2016) Genetic population structure of the Japanese grass lizard, Takydromus tachydromoides (Reptilia: Squamata), inferred from mitochondrial cytochrome b variations. Current Herpetology 35:22-32.
Kagawa N, Honda A, Zenno A, Omoto R, Imanaka S, Takehana Y, Naruse K (2016) Arginine vasotocin neuronal development and its projection in the adult brain of the medaka. Neuroscience Letters 613:47–53.
Myosho T, Takehana Y, Hamaguchi S, Sakaizumi M (2015) Turnover of sex chromosomes in celebensis group medaka fishes. G3: Genes, Genomes, Genetics 5:2685-2691.
Hayakawa H, Le QD, Kinoshita M, Takehana Y, Sakuma K, Takeshima H, Kojima S, Naruse K, Inoue K (2015) Genetic similarity of the Hainan medaka populations collected from hyper- and hypoosmotic environments in northern Vietnam. Ocean Science Journal 50:231-235.
Takehana Y, Matsuda M, Myosho T, Suster ML, Kawakami K, Shin-I T, Kohara Y, Kuroki Y, Toyoda A, Fujiyama A, Hamaguchi S, Sakaizumi M, Naruse K (2014) Co-option of Sox3 as the male-determining factor on the Y chromosome in the fish Oryzias dancena. Nature Communications 5:4157.
Uno Y, Asada Y, Nishida C, Takehana Y, Sakaizumi M, Matsuda Y (2013) Divergence of repetitive DNA sequences in the heterochromatin of medaka fishes: molecular cytogenetic characterization of constitutive heterochromatin in two medaka species: Oryzias hubbsi and O. celebensis (Adrianichthyidae, Beloniformes). Cytogenetic and Genome Research 141:212–226.
Kawaguchi M, Takahashi H, Takehana Y, Naruse K, Nishida M, Yasumasu S (2013) Sub-functionalization of duplicated genes in the evolution of nine-spined stickleback hatching enzyme. Journal of Experimental Zoology Part B: Molecular and Developmental Evolution 320:140–150.
Myosho T, Takehana Y, Sato T, Hamaguchi S, and Sakaizumi M (2012) The origin of the large metacentric chromosome pair in Chinese medaka (Oryzias sinensis). Ichthyological Research 59:384–388.
Takehana Y, Naruse K, Asada Y, Matsuda Y, Shin-I T, Kohara Y, Fujiyama A, Hamaguchi S, and Sakaizumi M (2012) Molecular cloning and characterization of the repetitive DNA sequences that comprise the constitutive heterochromatin of the W chromosomes of medaka fishes. Chromosome Research 20:71–81.
Kato M, Takehana Y, Fukuda Y, Naruse K, Sakaizumi M, Hamaguchi S (2011) An autosomal locus controls sex reversal in interspecific XY hybrids of the medaka fishes. Heredity 107:523–529.
Kato M, Takehana Y, Sakaizumi M, Hamaguchi S (2010) A sex-determining region on the Y chromosome controls the sex-reversal ratio in interspecific hybrids between Oryzias curvinotus females and Oryzias latipes males. Heredity 104:191–195.
Takehana Y, Hamaguchi S, Sakaizumi M (2008) Different origins of ZZ/ZW sex chromosomes in closely related medaka fishes, Oryzias javanicus and O. hubbsi. Chromosome Research 16:801–811.
Nagai T, Takehana Y, Hamaguchi S, Sakaizumi M (2008) Identification of the sex-determining locus in the Thai medaka, Oryzias minutillus. Cytogenetic and Genome Research 121:137–142.
Takehana Y, Naruse K, Hamaguchi S, Sakaizumi M (2007) Evolution of ZZ/ZW and XX/XY sex-determination systems in the closely related medaka species, Oryzias hubbsi and O. dancena. Chromosoma 116:463–470.
Tanaka K, Takehana Y, Naruse K, Hamaguchi S, Sakaizumi M (2007) Evidence for different origins of sex chromosomes in closely related medaka fishes: Substitution of the master sex-determining gene. Genetics 177:2075–2081.
Takehana Y, Demiyah D, Naruse K, Hamaguchi S, Sakaizumi M (2007) Evolution of different Y chromosomes in two medaka species, Oryzias dancena and O. latipes. Genetics 175:1335–1340.
Takehana Y, Naruse K, Sakaizumi M (2005) Molecular phylogeny of the medaka fishes genus Oryzias (Beloniformes: Adrianichthyidae) based on nuclear and mitochondrial DNA sequences. Molecular Phylogenetics and Evolution 36:417–428.
Takehana Y, Jeon SR, Sakaizumi M (2004) Genetic structure of Korean wild populations of the medaka Oryzias latipes inferred from allozymic variation. Zoological Science 21:977–988.
Takehana Y, Uchiyama S, Matsuda M, Jeon SR, Sakaizumi M (2004) Geographic variation and diversity of the cytochrome b gene in wild populations of medaka (Oryzias latipes) from Korea and China. Zoological Science 21:483–491.
Saka R, Takehana Y, Suguro N, Sakaizumi M (2003) Genetic population structure of Lefua echigonia inferred from allozymic and mitochondrial cytochrome b variations. Ichthyological Research 50:301–309.
Takehana Y, Nagai N, Matsuda M, Tsuchiya K, Sakaizumi M (2003) Geographic variation and diversity of the cytochrome b gene in Japanese wild populations of medaka, Oryzias latipes. Zoological Science 20:1279–1291.
笹土隆雄, 竹花佑介, 成瀬清（2014）モデル動物としてのメダカの特徴とメダカバイオリソース．Cytometry Research 24:1–7．
渡辺勝敏，高橋洋，北村晃寿，横山良太，北川忠生，武島弘彦，佐藤俊平，山本祥一郎，竹花佑介，向井貴彦，大原健一，井口恵一朗（2006）日本産淡水魚類の分布域形成史：系統地理的アプローチとその展望（総説）．魚類学雑誌 53:1–38.
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Naruse K, Takehana Y, Yamahira K (2019) Medaka and Oryzias species as model organisms and the current status of medaka biological resources. Eds by Murata K, Kinoshita M, Naruse K, Tanaka M, Kamei K In "Medaka: Biology, Management, and Experimental Protocols Volume 2". Wiley-Blackwell.
竹花佑介（2018）性染色体．日本動物学会編，「動物学の百科事典」，丸善出版，pp.180–181．
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Kimura T, Kamei Y, Takehana Y, Sasado T, Naruse K (2012) Medaka genomics and the methods and resources for decoding genomic functions. Eds by Denny P, Kole C. In “Genome Mapping and Genomics in Laboratory Animals”, Springer, pp.159–182.
Takehana Y. (2011) Frequent turnover of sex chromosomes in the medaka fishes. Eds by Naruse K, Tanaka M, Takeda H. In “Medaka: Model for Organogesis, Human Diseases and Evolution”. Springer, pp.229–240.
竹花佑介（2010）メダカの高精度系統地理マップをつくる．渡辺勝敏・高橋洋編，「淡水魚類地理の自然史」，北海道大学出版会，pp.105–122．
竹花佑介，酒泉満（2010）メダカ．野生生物保護学会編，「野生動物保護の事典」，朝倉書店，pp.657–659．
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Takehana Y. (2009) Wild strains. Eds by Kinoshita M, Murata K, Naruse K, Tanaka M. In “Medaka: Biology, Management and Experimental Protocols”. Wiley-Blackwell, pp.16–18.
Takehana Y. (2009) Phylogeny. Eds by Kinoshita M, Murata K, Naruse K, Tanaka M. In “Medaka: Biology, Management and Experimental Protocols”. Wiley-Blackwell, pp.3–9.
竹花佑介，北川忠生（2010）メダカ：人為的な放流による遺伝的攪乱．魚類学雑誌 57:76-79．
竹花佑介（2008）メダカに見る性染色体の進化．総研大ジャーナル 13:12–14．
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