Test of statistical significance for protein-DNA binding changes with insertion and deletion of bases in the genome (BC test): R package , Paper
Iteratively reweighted group lasso based on log composite regularization (group LOG): Matlab code, Paper
affinity testing for regulatory SNPs (atSNP): Bioconductor, Paper
Annotation Regression for GWAS (ARoG): R package, Paper
Web database for affinity testing for regulatory SNP discovery: atSNP Search, Paper