All Publications

Journal Publications 

Research Articles

1. Sun, B., Reynolds, K., Saha, SK, Zhang, S., McMahon, M., & Zhou, C. J. (2023). Ezh2-dependent methylation in oral epithelia promotes secondary palatogenesis. Birth Defects Research, 115 (19), 1851-1865. https://doi.org/10.1002/bdr2.2216

2. Lee M, Seok J, Saha SK, Cho S, Jeong Y, Gil M, Kim A, Shin HY, Bae H, Do JT, Kim YB, Cho SG. 2023. Alterations and Co-Occurrence of C-MYC, N-MYC, and L-MYC Expression are Related to Clinical Outcomes in Various Cancers. International Journal of Stem Cells, 6, 215-233. (IF: 3.011) DOI: 10.15283/ijsc22188. (Co-Author)

3. Biswas, P.K.; Park, S.R.; An, J.; Lim, K.M.; Dayem, A.A.; Song, K.; Choi, H.Y.; Choi, Y.; Park, K.S.; Shin, H.J.; Kim, A.; Gil, M.; Saha, S.K.; Cho, S.-G. 2023. The Orphan GPR50 Receptor Regulates the Aggressiveness of Breast Cancer Stem-like Cells via Targeting the NF-kB Signaling Pathway. International Journal of Molecular Sciences, 24, 2804. (IF: 6.208; Q1) DOI: https://doi.org/10.3390/ijms24032804 (Co-Author)

4. Gu, R.†, Zhang, S.†, Saha, S. K.†, Ji, Y., Reynolds, K., McMahon, M., Sun, B., Islam, M., Trainor, P. A., Chen, YiP., Xu, Y., Chai, Y., Burkart-Waco, D., and Zhou, C. J., 2022. Single-cell transcriptomic signatures and gene regulatory networks modulated by Wls in mammalian midline facial formation and clefts. Development  149 (14), dev200533. (IF: 6.868; Q1) DOI: https://doi.org/10.1242/dev.200533 (Co-first Author)  

5. Zhao, T., McMahon, M., Reynolds, K., Saha, S. K., Stokes, A., and Zhou, C., 2022. The role of Lrp6-mediated Wnt/beta-catenin signaling in the cause and intervention of spinal neural tube defects in mice. Disease Models & Mechanisms, 15 (6), dmm049517. (IF: 5.758; Q1) DOI: https://doi.org/10.1242/dmm.049517 (Co-Author) 

6. Rahman, M., Biswas, P.K., Saha, S.K. et al. 2022. Identification of glycophorin C as a prognostic marker for human breast cancer using bioinformatic analysis. Network Modeling Analysis in Health Informatics and Bioinformatics,11, 7. DOI: https://doi.org/10.1007/s13721-021-00352-0 (Co-Author) 

7. Sabeh, M.E.†, Saha, S. K.†, Afrin, S., and Borahay, M.A., 2021. Simvastatin inhibits Wnt/β-catenin pathway in uterine leiomyoma. Endocrinology, 62 (12), bqab211. (IF: 4.736; Q1) DOI: 10.1210/endocr/bqab211 (Co-first Author)

8. Islam, S.M.R. †, Saha, S. K. †,*, El-Sappagh, S., Tariq, F.,  Das, J., Afzal, M., and Cho, S-G.*, 2021. Expression of GRINA Correlates with Prognosis in Human Cancers: A Pan-cancer Analysis. BioRxiv. Doi: https://doi.org/10.1101/2021.05.13.444089 (Co-first & Co-corresponding Author)

9. Seok, J., Gil, M., Dayem, A. A., Saha, S.K., Cho, S.-G. 2021. Multi-omics Analysis of SOX4, SOX11, and SOX12 Expression and the Associated Pathways in Human Cancers. Journal of Personalized Medicine, 11 (8), 823. (IF: 4.945; Q1) DOI: https://doi.org/10.3390/jpm11080823 (Co-Author)

10. Rahman, M.S.†, Hossain, M.S.†, Saha, S.K.†, Rahman, S., Sonne, C., Kim, K.-H., 2021. Homology Modeling and Probable Active Site Cavity Prediction of Uncharacterized Arsenate Reductase in Bacterial spp. Applied Biochemistry and Biotechnology, 193, 1-18. (IF: 2.926) DOI: https://doi.org/10.1007/s12010-020-03392-w (Co-first Author)  

11. Kwak, H. J., Gil, M., Chae, H., Seok, J., Soundrarajan, N., Saha, S.K., Kim, A., Park, K. S., Park, C., and Cho, S-G., 2020. Expression of ATP/GTP Binding Protein 1 Has Prognostic Value for the Clinical Outcomes in Non-Small Cell Lung Carcinoma. Journal of Personalized Medicine, 10 (4), 263. (IF: 4.945; Q1) DOI: https://doi.org/10.3390/jpm10040263 (Co-Author)

12. Chae, H., Gil, M., Saha, S.K., Kwak, H.J., Park, H.-W., Vellingiri, B., and Cho, S.-G., 2020. Sestrin2 expression has regulatory properties and prognostic value in lung cancer. Journal of Personalized Medicine, 10 (3), 109. (IF: 4.945; Q1) DOI: https://doi.org/10.3390/jpm10030109 (Co-Author)

13. Saha, S.K.†, Jeon, T.-I.†, Jang, S.B., Kim, S.J., Lim, K.M., Choi, Y.J., Kim, H.G., Kim, A., and Cho, S-G., 2020. Bioinformatic approach for identifying novel biomarkers and their signaling pathways involved in interstitial cystitis/bladder pain syndrome. Journal of Clinical Medicine, 9 (6), 1935. (IF: 5.688; Q1) DOI: https://doi.org/10.3390/jcm9061935 (Co-first Author)

14. Saha, S. K., Choi, H-Y., Yang, G-M., Biswas, P.K., Kim, K. S., Kang, G.H., Gil, M., and Cho, S-G., 2020. GPR50 promotes hepatocellular carcinoma progression via the Notch signaling pathway through direct interaction with ADAM17. Molecular Therapy-Oncolytics, 17, 332-349. (IF: 7.2; Q1) DOI: 10.1016/j.omto.2020.04.002 (First Author)

15. Saha, S. K. †,*, Islam, S.M.R. †, Kwak, K-S., Rahman, S., and Cho, S-G.*, 2020. PROM1 and PROM2 Expression Differentially Modulates Clinical Prognosis of Cancer: A Multiomics Analysis. Cancer Gene Therapy, 27 (3-4), 147-167. (IF: 5.987; Q1). DOI: 10.1038/s41417-019-0109-7 (Co-first & Co-corresponding Author)

16. Saha, S.K.†, Kader, M.A.†, Samad, A., Biswas, K.C., Rahman, M.A., Parvez, M.A.K., and Rahman, M.S., 2020. Prognostic and clinico-pathological significance of BIN1 in breast cancer. Informatics in Medicine Unlocked, 19, 100327. DOI: 10.1016/j.imu.2020.100327 (Co-first Author)

17. Barman, U.D.†, Saha, S. K.†, Kader, M.A., Jamal, M.A.H.M., Sharma, S.P., Samad, A., and Rahman, M.S., 2020. Clinicopathological and prognostic significance of GPC3 in human breast cancer and its 3D structure prediction. Network Modeling Analysis in Health Informatics and Bioinformatics, 9, 24. DOI: 10.1007/s13721-020-00234-x (Co-first Author)  

18. Kim, K.; Gil, M.; Dayem, A.A.; Choi, S.; Kang, G.-H.; Yang, G.-M.; Cho, S.; Jeong, Y.; Kim, S.J.; Seok, J.; Kwak, H.J.; Saha, S. K.; Kim, A.; Cho, S.-G. 2020. Improved Isolation and Culture of Urine-Derived Stem Cells (USCs) and Enhanced Production of Immune Cells from the USC-Derived Induced Pluripotent Stem Cells. Journal of Clinical Medicine, 9, 827. (IF: 5.688; Q1). DOI: 10.3390/jcm9030827 (Co-Author)

19. Rahman, S., Jamal, M.A.H.M., Biswas, P.K., Rahman, S.M., Sharma, S.P., Saha, S. K.*, Hong, S.T.*, and Islam, M.R.*, 2020.  Arsenic Remediation in Bangladeshi Rice Varieties with Enhance Plant Growth by Unique Arsenic-Resistant Bacterial Isolates. Geomicrobiology Journal, 37 (2), 130-142. (IF: 2.308). DOI: 10.1080/01490451.2019.1666938 (Co-corresponding Author)

20. Saha, S.K.†, Biswas, P.K.†, Gil, M.*, and Cho, S-G.*, 2019. High Expression of TTYH3 is Related to Poor Clinical Outcomes in Human Gastric Cancer. Journal of Clinical Medicine, 8 (11), 1762. (IF: 5.688; Q1). DOI: 10.3390/jcm8111762 (Co-first Author)

21. Saha, S. K., Kim, K. E., Islam, S.M.R., Cho, S-G., and Gil, M., 2019. Systematic Multiomics Analysis of Alterations in C1QBPmRNA Expression and Relevance for Clinical Outcomes in Cancers. Journal of Clinical Medicine, 8 (4), 513. (IF: 5.688; Q1). DOI: 10.3390/jcm8040513 (First Author) 

22. Saha, S. K. †,*, Islam, S.M.R. †, Abdullah-AL-Wadud, M., Islam, S., Ali, F., and Park, K. S., 2019. Multiomics Analysis Reveals GLS and GLS2 Differentially Modulate the Clinical Outcomes of Cancer. Journal of Clinical Medicine, 8 (3), 355. (IF: 5.688; Q1). DOI: 10.3390/jcm8030355 (Co-first & Corresponding Author) 

23. Choi, H-Y., Yang, G-M., Dayem, A. A., Saha, S. K., Kim, K. S., Yoo, Y., Hong, K., Kim, J-H., Yee, C., Lee, K-M., and Cho, S-G., 2019. Hydrodynamic shear stress promotes epithelial-mesenchymal transition by downregulating ERK and GSK3β activities. Breast Cancer Research, 21 (1), 6. (IF: 6.466; Q1). DOI: 10.1186/s13058-018-1071-2 (Co-Author)

24. Saha, S. K., Yin, Y.F., Chae, H. S., and Cho, S-G., 2019. Opposing regulation of cancer properties via KRT19-mediated differential modulation of Wnt/β-catenin/Notch signaling in breast and colon cancers. Cancers, 11 (1), 99. (IF: 6.639; Q1). DOI: 10.3390/cancers11010099 (First Author) 

25. Saha, S. K. †, Jong, Y. †, Cho, S., and Cho, S-G., 2018. Systematic expression alteration analysis of master reprogramming factor, octamer-binding transcription factor 4 (OCT4), in human cancer and their prognostic outcomes. Scientific Reports, 8, 14806. (IF: 4.379; Q1). DOI: 10.1038/s41598-018-33094-7 (Co-first Author)

26. Saha, S. K., Kim, K. S., Yang, G-M., Choi, H-Y., and Cho, S-G., 2018. Cytokeratin 19 (KRT19) has a Role in the Reprogramming of Cancer Stem Cell-Like Cells to Less Aggressive and More Drug-Sensitive Cells. International Journal of Molecular Sciences, 19 (5), 1423. (IF: 6.208; Q1). DOI: 10.3390/ijms19051423 (First Author)

27. Hossain, M. K.†, Saha, S. K. †, Dayem, A. A., Kim, J-H., Kim, K. S., Yang, G-M., Choi, H-Y., and Cho, S-G., 2018. Bax Inhibitor-1 Acts as an Anti-Influenza Factor by Inhibiting ROS Mediated Cell Death and Augmenting Heme-Oxygenase 1 Expression in Influenza Virus Infected Cells. International Journal of Molecular Sciences, 19 (3), 712. (IF: 6.208; Q1). DOI: 10.3390/ijms19030712 (Co-first Author) 

28. Saha, S. K., Yin, Y.F., Kim, K. S., Yang, G-M., Dayem, A. A., Choi, H-Y., and Cho, S-G., 2017. Valproic acid induces endocytosis-mediated doxorubicin internalization and shows synergistic cytotoxic effects in hepatocellular carcinoma cells. International Journal of Molecular Sciences, 18 (5), 1048. (IF: 6.208; Q1). DOI: 10.3390/ijms18051048 (First Author)

29. Saha, S. K., Choi, H-Y., Kim, B-W., Dayem, A. A., Yang, G-M., Kim, K. S., Yin, Y.F., and Cho, S-G., 2017. KRT19 directly interacts with β-catenin/RAC1 complex to regulate NUMB-dependent NOTCH signaling pathway and breast cancer properties. Oncogene, 36 (3), 332-349. (IF: 9.867; Q1). DOI: 10.1038/onc.2016.221 (First Author)

30. Rahman, M. S., Ahad, A., Saha, S. K., Hong, J., and Kim, K-H., 2017. Antibacterial and phytochemical properties of Aphanamixis polystachya essential oil. Analytical Science and Technology, 30 (3), 113-121. DOI: https://doi.org/10.5806/AST.2017.30.3.113 (Co-Author) 

31. Rahman, M. S., Hossain, R., Saikot. F. K., Rahman, S. M., Saha, S. K., Hong, J., and Kim, K-H., 2017. Insights into the in vitro germicidal activities of Acalypha indica. Analytical Science and Technology, 30 (1), 26-31. DOI: https://doi.org/10.5806/AST.2017.30.1.26 (Co-Author)

32. Dayem, A. A., Kim, B-W., Gurunathan, S., Choi, H-Y., Yang, G-M., Saha, S. K., Han, D., Han, J., Kim, K., Kim, J-H., and Cho, S-G., 2014. Biologically synthesized silver nanoparticles induce neuronal differentiation of SH-SY5Y cells via modulation of reactive oxygen species, phosphatases, and kinase signaling pathways. Biotechnology Journal, 9 (7), 934-943. (IF: 4.677; Q1). DOI: 10.1002/biot.201300555 (Co-Author)

33. Saha, S.K., and Kim, K.-H., 2013. Long-term variations of airborne cadmium (Cd) concentrations in major urban areas of Korea between 1991 and 2010. Aerosol and Air Quality Research, 13 (3), 1078–1089. (IF: 4.53; Q2). DOI: 10.4209/aaqr.2012.10.0268 (First Author)

34. Saha, S.K., Jo, S.-H., Song, H.-N., Brown, R.J.C., and Kim, K.-H., 2012. Contrasting recovery patterns of 2, 4-dinitrophenylhydrazones (DNPH) derivative of carbonyls between liquid and gas phase standards using HPLC-based analysis. Atmospheric Environment, 62, 562-565. (IF: 5.755; Q1). DOI: 10.1016/j.atmosenv.2012.09.005 (First Author)

35. Haque, M., Saha, S.K., Islam, D., and Islam, M., 2012. Comparative study between the effect of Coccinia cordiffolia (leaves and roots) on hypoglycemic and hypolipidemic activity of alloxan induced type 2 diabetic long-evans rats. Journal of Diabetes and Endocrinology, 3 (4), 37-43. DOI: 10.5897/JDE11.018 (Co-Author)

36. Saha, S.K.*, Haque, M., Islam, D., Rahman, M., Islam, M., Parvin, A., and Rahman, S., 2012. Comparative study between the effect of Momordica charantia (wild and hybrid variety) on hypoglycemic and hypolipidemic activity of alloxan induced type 2 diabetic long-evans rats. Journal of Diabetes Mellitus, 2 (1), 131-137. (IF: 0.49).  DOI: 10.4236/jdm.2012.21022 (First & Corresponding Author) 

Review Articles

37. 50. Sun, B., Reynolds, K., Garland, M., McMahon, M., Saha, S. K., and Zhou, C., 2023. Epigenetic implications in maternal diabetes and metabolic syndrome-associated risk of orofacial clefts. Birth Defects Research, 115(19):1835-1850. DOI: 10.1002/bdr2.2226 (Co-Author) 

38. Haque, S. T., Saha, S. K., Haque, M. E., and Biswas, N., 2021. Nanotechnology-based Therapeutic Applications: In Vitro, In Vivo Clinical Studies for Diabetic Wound Healing. Biomaterials Science, 9, 7705-7747. (IF: 7.59; Q1) Doi: https://doi.org/10.1039/D1BM01211H (Co-Author)

39. Saha, S. K. †,*, Islam, S.M.R. †, Saha, T., Gil, M., Nkenyereye, L., Kwak, K-S., and Cho, S-G.*, 2021. Prognostic role of EGR1 in breast cancer: a systematic review. BMB Reports, 54 (10) 497-504. (IF: 5.041; Q2) PMID: 34488929 (Co-first & Co-corresponding Author)

40. Sabeh, M.E.†, Saha, S. K.†, Afrin, S., Islam, M. S., and Borahay, M.A., 2021. Wnt/β-catenin signaling pathway in uterine leiomyoma: role in tumor biology and targeting opportunities. Molecular and Cellular Biochemistry, 476, 3513-3536. (IF: 3.842) Doi: https://doi.org/10.1007/s11010-021-04174-6 (Co-first Author)

41. Rahman, M.A.†, Saha, S. K. †, Rahman, M.S., Uddin, M.J., Uddin, M.S., Pang, M.-G., Rhim, H., andCho, S-G., 2020. Molecular Insights into Therapeutic Potential of Autophagy Modulation by Natural Products for Cancer Stem Cells. Frontiers in Cell and Developmental Biology, 8, 283. (IF: 6.684; Q1) DOI: 10.3389/fcell.2020.00283 (Co-first Author)

42. Tejwan, N., Saha, S. K.*, and Das, J.*, 2020. Multifaceted applications of green carbon dots synthesized from renewable sources. Advances in Colloid and Interface Science, 275, 102046. (IF: 15.19; Q1). DOI: 10.1016/j.cis.2019.102046 (Co-corresponding Author)

43. Saha, S. K. †,*, Saikot, F. K. †, Rahman, S. †, Jamal, M.A.H.M.†, Rahman, S. M.K. †, Islam, S.M.R.†, Kim, K.-H.†,*, 2019. Programmable molecular scissors: Applications of a new tool for genome editing in biotech. Molecular Therapy-Nucleic Acid, 14, 212-238. (IF: 10.183; Q1). DOI: 10.1016/j.omtn.2018.11.016 (Co-first & Co-corresponding Author)

44. Saha, S. K., Lee, S. B., Won, J., Choi, H-Y., Kim, K. S., Yang, G-M., Dayem, A. A., and Cho, S-G., 2017. Correlation between Oxidative Stress, Nutrition, and Cancer Progression. International Journal of Molecular Sciences, 18 (7), 1544. (IF: 6.208; Q1). DOI: 10.3390/ijms18071544 (First Author)

45. Ansari, A. †, Rahman, S. †, Saha, S. K. †, Saikot, F. K. †, Deep, A., and Kim, K.-H., 2017. Function of the SIRT3 mitochondrial deacetylase in cellular physiology, cancer, and neurodegenerative disease. Aging cell, 16 (1), 4-16. (IF: 11.005; Q1; <5%). DOI: 10.1111/acel.12538 (Co-first Author)

46. Dayem, A. A., Choi, H-Y., Yang, G-M., Kim, K. S., Saha, S. K., and Cho, S-G., 2016. The Anti-cancer Effect of Polyphenols against Breast Cancer and Cancer Stem Cells: Molecular Mechanisms. Nutrients, 8 (9), 581. (IF: 6.706; Q1). DOI: 10.3390/nu8090581 (Co-Author)

47. Dayem, A. A., Hossain, M. K., Lee, S., Kim, K. S., Saha, S. K., Yang, G-M., Choi, H-Y., and Cho, S-G., 2017. The role of reactive oxygen species (ROS) in the biological activities of metallic nanoparticles. International Journal of Molecular Sciences, 18 (1), 120. (IF: 6.208; Q2). DOI: 10.3390/ijms18010120 (Co-Author)

48. Dayem, A. A., Choi, H-Y., Yang, G-M., Kim, K. S., Saha, S. K., Kim, J-H., and Cho, S-G., 2016. The potential of nanoparticles in stem cell differentiation and further therapeutic applications. Biotechnology Journal, 11 (12), 1550–1560. (IF: 5.726; Q1). DOI: 10.1002/biot.201600453 (Co-Author)

49. Hossain, M. K., Dayem, A. A., Han, J., Yin, Y.F., Kim, K. S., Saha, S. K., Yang, G-M., Choi, H-Y., and Cho, S-G., 2016. Molecular Mechanisms of the Anti-Obesity and Anti-Diabetic Properties of Flavonoids. International Journal of Molecular Sciences, 17 (4), 569. (IF: 6.208; Q1). DOI:  10.3390/ijms17040569 (Co-Author)

50. Hossain, M. K., Dayem, A. A., Han, J., Saha, S. K., Yang, G-M., Choi, H-Y., and Cho, S-G., 2016. Recent Advances in Disease Modeling and Drug Discovery for Diabetes Mellitus Using Induced Pluripotent Stem Cells. International Journal of Molecular Sciences, 17 (2), 256. (IF: 6.208; Q1). DOI: 10.3390/ijms17020256 (Co-Author)

51. Choi, H-Y., Saha, S. K., Kim, K., Kim, S., Yang, G-M., Kim, B-W., Kim, J-H., and Cho, S-G., 2015. G protein-coupled receptors in stem cell maintenance and somatic reprogramming to pluripotent or cancer stem cells. BMB Reports, 48 (2), 68-80. (IF: 5.041; Q2). DOI:  10.5483/BMBRep.2015.48.2.250 (Co-Author)

52. Rahman, S., Kim, K.-H., Saha, S. K., Swaraz, A. M., and Paul, D. K., 2014. Review of remediation techniques for arsenic (As) contamination: A novel approach utilizing bio-organisms. Journal of Environmental Management, 134, 175–185. (IF: 8.91; Q1). DOI: 10.1016/j.jenvman.2013.12.027 (Co-Author)