PUBLICATIONS (+Pre prints)
† Equal contribution/Co-first author; *Corresponding author
1. Chowdhury, S., Zielinski, D.C., Dalldorf, C., Rodrigues, J.V., Palsson, B., and Shakhnovich, E. (2022). Empowering systems-guided drug target discovery with metabolic and structural analysis bioRxiv, 2022.2005.2017.444532. (https://doi.org/10.1101/2021.05.17.444532) (Just Accepted, May15th 2023) Nature Communications Impact Factor: 17.6
2. Mati, S; Chowdhury,S ; Sarkar, S ; Bera, N; Sarkar, Nilmoni. "Base Specific Target of Genomic DNAs and Oligonucleotide : Comparison on Spectroscopic, Computational and In Vitro Approach" International Journal of Biological Macromolecules, 124993 (2023). Impact Factor: 8.02
3. Sen Santara, S., Lee, D.-J., Crespo, Â., Hu, J.J., Zhang, Y., Chowdhury, S., Meza-Sosa, K.F., and Lewandrowski, M, Haiwei Zhang, Marjorie Rowe, Arthur McClelland, Hao Wu, Caroline Junqueira, Judy Lieberman. (2023). The NK cell receptor NKp46 recognizes ecto-calreticulin on ER-stressed cells. Nature 616, 348-356. Impact Factor: 53.2
4. Serebryany, E., Chowdhury, S., Woods, C., Thorn, D.C., Watson, N.E., McClelland, A., Klevit, R., and Shakhnovich, E. (2023). A native chemical chaperone in the human eye lens suppresses redox-dependent lens crystallin misfolding. Biophysical Journal 122, 337a.
5. Sanyal, D., Banerjee, S., Bej, A., Chowdhury, V.R., Uversky, V.N., Chowdhury, S*., and Chattopadhyay, K. (2022). An integrated understanding of the evolutionary and structural features of the SARS-CoV-2 spike receptor binding domain (RBD). International Journal of Biological Macromolecules. (https://doi.org/10.1016/j.ijbiomac.2022.07.022) Impact Factor: 8.02
6. Serebryany, E., Chowdhury, S., Woods, C.N., Thorn, D.C., Watson, N.E., McClelland, A.A., Klevit, R.E., and Shakhnovich, E.I. (2022). A native chemical chaperone in the human eye lens. Elife 11, e76923. Impact Factor: 8.4
7. Zhang, Y., Chowdhury, S.†., Rodrigues, J.V., and Shakhnovich, E. (2021). Development of antibacterial compounds that constrain evolutionary pathways to resistance. Elife 10, e64518. (DOI: 10.7554/eLife.64518) Impact Factor: 8.4
8. Sannigrahi, A., Chowdhury, S.†, Das, B., Banerjee, A., Halder, A., Naganathan, A.N., Karmakar, S., and Chattopadhyay, K. (2021). "The metal cofactor zinc and interacting membranes modulate SOD1 conformation-aggregation landscape in an in vitro ALS Model." (DOI: 10.7554/eLife.61453) Elife 10, e61453. Impact Factor: 8.4
9. Sen, S., Dey, A., Chowdhury, S.†, Maulik, U., and Chattopadhyay, K. (2019). "Understanding the evolutionary trend of intrinsically structural disorders in cancer relevant proteins as probed by Shannon entropy scoring and structure network analysis." BMC bioinformatics 19, 231-242. (doi.org/10.1186/s12859-018-2552-0) Impact Factor: 3.1
10. Sannigrahi, A., Chowdhury, S.†, Nandi, I., Sanyal, D., Chall, S., and Chattopadhyay, K. (2019). "Development of a near infrared Au–Ag bimetallic nanocluster for ultrasensitive detection of toxic Pb 2+ ions in vitro and inside cells." Nanoscale Advances 1, 3660-3669. (DOI: 10.1039/C9NA00459A) Impact Factor: 4.5
11. Chowdhury, S., Sanyal, D., Sen, S., Uversky, V.N., Maulik, U., and Chattopadhyay, K. (2019). "Evolutionary Analyses of Sequence and Structure Space Unravel the Structural Facets of SOD1." Biomolecules 9, 826. (doi.org/10.3390/biom9120826) Impact Factor: 6.06
12. Chowdhury, S., Sen, S., Banerjee, A., Uversky, V.N., Maulik, U., and Chattopadhyay, K. (2019). "Network mapping of the conformational heterogeneity of SOD1 by deploying statistical cluster analysis of FTIR spectra.” Cellular and Molecular Life Sciences 76, 4145-4154. (doi.org/10.1007/s00018-019-03108-2) Impact Factor: 9.2
13. Hazra, S., Bodhak, C., Chowdhury, S., Sanyal, D., Mandal, S., Chattopadhyay, K., and Pramanik, A. (2019). "A novel tryptamine-appended rhodamine-based chemosensor for selective detection of Hg 2+ present in aqueous medium and its biological applications." Analytical and bioanalytical chemistry 411, 1143-1157. (doi.org/10.1007/s00216-018-1546-0) Impact Factor: 4.15
14. Sarkar-Banerjee, S., Chowdhury, S.†, Sanyal, D., Mitra, T., Roy, S.S., and Chattopadhyay, K. (2018). "The Role of Intestinal Fatty Acid Binding Proteins in Protecting Cells from Fatty Acid Induced Impairment of Mitochondrial Dynamics and Apoptosis." Cellular Physiology and Biochemistry 51, 1658-1678. (doi.org/10.1159/000495672) Impact Factor: 5.8
15. Mukherjee, S., Hazra, S., Chowdhury, S., Sarkar, S., Chattopadhyay, K., and Pramanik, A. (2018). "A novel pyrrole fused coumarin based highly sensitive and selective fluorescence chemosensor for detection of Cu2+ ions and applications towards live cell imaging." Journal of Photochemistry and Photobiology A: Chemistry 364, 635-644. Cover Article with emphasis on my in-cell study. (doi.org/10.1016/j.jphotochem.2018.07.004) Impact Factor: 4.2
16. Nandi, I., Chall, S., Chowdhury, S.†, Mitra, T., Roy, S.S., and Chattopadhyay, K. (2018). "Protein fibril-templated biomimetic synthesis of highly fluorescent gold nanoclusters and their applications in cysteine sensing." ACS omega 3, 7703-7714. (doi/10.1021/acsomega.8b01033) Impact Factor:3.51
17. Saha, B., Chowdhury, S., Sanyal, D., Chattopadhyay, K., and Suresh Kumar, G. (2018). "Comparative study of toluidine blue O and methylene blue binding to lysozyme and their inhibitory effects on protein aggregation." ACS omega 3, 2588-2601. (doi/pdf/10.1021/acsomega.7b01991) Impact Factor:3.51
18. Chowdhury, S., Banerjee, A., and Chattopadhyay, K. (2017). "Metal ion co-factors sculpt the heterogeneity of conformational landscape in Superoxide Dismutase." Paper presented at the European Biophysics Journal with Biophysics Letters (Springer 233 Spring st, New York, NY, USA).
19. Singharoy, D., Chowdhury, S., Mati, S.S., Ghosh, S., Chattopadhyay, K., and Bhattacharya, S.C. (2017). "Photoinduced electron transfer switching mechanism of a naphthalimide derivative with its solvatochromic behaviour: an experimental and theoretical study with in cell investigations." Chemistry–A European Journal 23, 16516-16524. (doi/abs/10.1002/chem.201702414) Impact Factor: 5.4
20. Sarkar-Banerjee, S., Chowdhury, S.†, Paul, S.S., Dutta, D., Ghosh, A., and Chattopadhyay, K. (2016). "The non-native helical intermediate state may accumulate at low pH in the folding and aggregation landscape of the intestinal fatty acid binding protein." Biochemistry 55, 4457-4468. ACS Biochemistry Research Highlight. (doi/abs/10.1021/acs.biochem.6b00390) Impact Factor: 3.1
Manuscripts under preparation/submitted (no arXive/bioRxive submission):
Sanyal, D., Roy Chowdhury, Vaidehi,. Banerjee, S., Chowdhury, S*., Chattopadhyay,K., “Blocking evolutionary escape routes of chemotherapy-resistance using machine learning aided drug repurposing”
Sanyal, D., Banerjee, S., Roy Chowdhury, Vaidehi,. Chowdhury, S*., Chattopadhyay,K., “Evolution inspired drug discovery: A ML aided exploration of potential leads to block evolutionary escape routes towards antibiotic resistance”
Chowdhury S., Suparna Sarkar-Banerjee, Krishnananda Chattopadhyay. “Unraveling the effect of membrane micro-domain on lipid binding protein and ligand association”