Resources
[Link]
[Link]
[Link]
Background
Inteins or internal proteins are enzymes that catalyze the splicing of the polypeptide chains (external proteins or exteins) at their N-and C-terminus (see the figure above). These enzymes have found immense biotechnological applications (Wood 2014) such as self-cleaving affinity tags for protein purification, ligation of peptide chains, synthesis of cyclic peptides and circular proteins, site-specific labeling of proteins, and biosensors for detecting protein-protein interactions, protein-DNA interaction, redox states and protease activity.
In our lab, we have identified a new intein enzyme from Spirulina platensis and thoroughly characterized its function and structure (Boral 2020). This intein, named Spl DnaX mini-intein, is one of the smallest, fastest and stable intein enzymes discovered till date, and hence, ideal for protein engineering. We have solved its structure by solution NMR spectroscopy (PDB code: 7CFV).
Impact
An important goal of this project is to design allosteric regulation of its function. We are using ROSETTA and molecular dynamics (MD) simulation for design purposes and biochemical assay to investigate the protein function. We are also designing several split inteins.