2026 [simbad] School & Workshop

9 | Martin Weigt (Sorbonne) Statistical mechanics of protein sequences: from data to models I

10 | Luca Ferretti (Oxford) Epidemiology, Molecular evolution, natural selection and fitness landscapes I

 11 | Break

11:30 | Carla Bosia (Politecnico di Torino) Ultrasensitivity from resource competition: microRNAs as a case study I

12:30 | Break

14:30 | Martin Weigt (Sorbonne) Statistical mechanics of protein sequences: from data to models II

15:30 | Carla Bosia (Politecnico di Torino) Ultrasensitivity from resource competition: microRNAs as a case study II

9 | Luca Ferretti (Oxford) Epidemiology, Molecular evolution, natural selection and fitness landscapes II

10 | Daniele De Martino (Instituto Biofisika) Modeling Metabolism I

11 | Break

11:30 | Martin Weigt (Sorbonne) Statistical mechanics of protein sequences: from data to models III

12:30 | Break

14:30 | Carla Bosia (Politecnico di Torino) Ultrasensitivity from resource competition: microRNAs as a case study III

15:30 | Jorge Fdez de Cossio Diaz (Paris-Saclay) Representation Learning I

9 | Luca Ferretti (Oxford) Epidemiology, Molecular evolution, natural selection and fitness landscapes III

10 | Jorge Fdez de Cossio Diaz (Paris-Saclay) Representation Learning II

11 | Break

11:30 | Daniele De Martino (Instituto Biofisika) Modeling Metabolism II

12:30 | Break

14:30 | Andrea Pagnani (Politecnico di Torino) Protein Language Models I

9 | Daniele De Martino (Instituto Biofisika) Modeling Metabolism III

10 | Jorge Fdez de Cossio Diaz (Paris-Saclay) Representation Learning II

11 | Break

11:30 | Andrea Pagnani (Politecnico di Torino) Protein Language Models II

12:30 | Break

14:30 | Carlo Lucibello (Univ. Bocconi) Diffusion Models I

9 | Carlo Lucibello (Univ. Bocconi) Diffusion Models II

10 | Andrea Pagnani (Politecnico di Torino) Protein Language Models III

11 | Break

11:30 | Carlo Lucibello (Univ. Bocconi) Diffusion Models III

9 | Chiara Enrico Bena (Paris) Studying mutations in single cells in real time I

10 | Ayari Fuentes Hernandez (UNAM) Modeling Evolutionary Dynamics in Bacterial Communities I

 11 | Break

11:30 | Francesco Di Lauro (Oxford) Introduction to epidemics on networks: exact models, mean-field models, and beyond I

12:30 | Break

14:30 | Chiara Enrico Bena (Paris) Studying mutations in single cells in real time II

15:30 | Ayari Fuentes Hernandez (UNAM) Modeling Evolutionary Dynamics in Bacterial Communities II

9 | Loredana Martignetti (ENS) From transcriptomic data analysis to predictive dynamical network modelling I

10 | Denis Thieffry (ENS) From transcriptomic data analysis to predictive dynamical network modelling II

 11 | Break

11:30 | Francesco Di Lauro (Oxford) Introduction to epidemics on networks: exact models, mean-field models, and beyond II

12:30 | Break

14:30 | Ayari Fuentes Hernandez (UNAM) Modeling Evolutionary Dynamics in Bacterial Communities III

15:30 | Chiara Enrico Bena (Paris) Studying mutations in single cells in real time III

9 | Gautier Stoll (ENS) From transcriptomic data analysis to predictive dynamical network modelling III

10 | Training Labs (all day)

9 | Elisabeth Remy (Paris) A Boolean model of early hematopoiesis aging

9:25 | Denis Thieffry (Paris) Reducible computational model of APL resistance to Retinoic Acid therapy

9:50 | Karina Garcia Fernandez (CIM) Intracellular signaling in CD8+ T-cells induced by Interleukin 2: a modeling approach

10:15 | Gautier Stoll (Paris) Heterogeneous cell tissue modeling with MaBoSS

10:40 | Break

11 | Roberto Netti (Paris) Sparse generative models of protein sequences

11:25 | Lorenzo Rosset (Paris) Designing thermostable ribozymes with generative models

11:50 | Francesco Caredda (Torino) Controllable protein design via autoregressive DCA

12:15 | Lunch

14 | Alya Zeynati (Paris) Towards evolution-aware ancestral sequence reconstruction

14:25 | Nadia Gonzalez (UNGS) Transition from healthy to cancerous tissue in the crypts of Lieberkuhn

14:50 | Federico Florio (Torino) Network inference for agent-based models

9 | Luis Carlos Figundes Latoski (Porto Alegre) Cross-feeding percolation phase transition of intercellular metabolic networks

9:25 | Ricardo Bringas (La Habana) Inferring molecular mechanisms from multiomics data analysis

9:50 | Candela Szischik (Buenos Aires) Frequency-decoding in post-transcriptional regulation

10:15 | David Machado (La Habana) Local equations for the generalized Lotka-Volterra model on sparse asymmetric graphs

10:40 | Break

11 | Gallo Ballati (Paris) Integrating molecular dynamics simulations and experiments to study bioactive peptides

11:25 | Augusto Gonzalez (La Habana) Deregulation cascades in cancer

11:50 | Rolando Perez (La Habana) Carcinogenesis and clonal evolution of tumors: a perspective in terms of N- and T-genes

12:15 | Lunch

14 | Federico Scarpati (Paris) 3d reconstruction for DNA microscopy

14:25 | Caroline Dracxler (Sao Paulo) Ectomycorrhyzal fungi disproportionately shape tropical plant-fungi networks