1. Drug-Induced Differential Gene Expression Analysis on Nanoliter Droplet Microarrays: Enabling Tool for Functional Precision Oncology.
   El Faraj REK, Chakraborty S, Zhou M, Sobol M, Thiele D, ShatfordAdams L, Cassal MC, Kaster AK, Dietrich S, Levkin PA and Popova AA.

Adv Healthc Mater. e2401820 (2025) 

2. Novel genetic associations with childhood adipocytokines in Indian adolescents.
   Nair JM, Chauhan G, Prasad G, Chakraborty S, Bandesh K, Giri AK, Marwaha RK, Basu A, Tandon N, Bharadwaj D. 

Cytokine.190:156935 (2025) 

3. Mapping the landscape of childhood obesity: genomic insights and socioeconomic status in Indian school-going children.
   Nair JM, Chauhan G, Prasad G, Bandesh K, Giri AK, Chakraborty S, Marwaha RK, Mathur S, Choudhury D, Tandon N, Basu A, Bharadwaj D.

Obesity (Silver Spring) (2025) 

4. Genetic insights into CRP levels in Indian adolescents: confirming adult genetic associations.
   Nair JM, Bandesh K, Giri AK, Chakraborty S, Marwaha RK, Basu A, Tandon N, Bharadwaj D.

Mol Genet Genomics, 300(1):17 (2025) 

5. Engineered FnCas9 Mediated Mutation Profiling for Clarithromycin Resistance in Helicobacter pylori Strains Isolated from Indian Patients with Gastrointestinal Disorders .
   Chakraborty S, Rana S, Gulati S, Chaudhary S, Panigrahi MK, Hallur VK, Maiti S, Chakraborty D and Makharia GK.

Microchemical Journal, 112051 (2024) 

6. "Cells-to-cDNA on Chip": Phenotypic Assessment and Gene Expression Analysis from Live Cells in Nanoliter Volumes Using Droplet Microarrays.
   Chakraborty S, Luchena C, Elton JJ, Schilling MP, Reischl M, Roux M, Levkin PA and Popova AA.

Adv Healthc Mater. e2102493 (2022) 

7. Miniaturized droplet microarray platform enables maintenance of human induced pluripotent stem cell pluripotency.
   Liu Y, Chakraborty S, Direksilp C, Scheiger JM, Popova AA and Levkin PA.

Mater Today Bio. 12:100153 (2021)

8. Droplet Microarrays for cell culture: effect of surface properties and nanoliter culture volume on global transcriptomic landscape.

Chakraborty S, Gourain V, Benz M, Scheiger JM, Levkin PA and Popova AA.

Mater Today Bio. 11:100112 (2021) 

9. Combinatorial Synthesis of a Lipidoid Library by Thiolactone Chemistry: In Vitro Screening and In Vivo Validation for siRNA Delivery.

Molla MR, Chakraborty S, Munoz Sagredo L, Drechsler M, Orian Rousseau V and Levkin PA.

Bioconjug Chem. 31(3):852‐860 (2020) 

10. Role of Tmem163 in zinc-regulated insulin storage of MIN6 cells: Functional exploration of an Indian type 2 diabetes GWAS associated gene.

Chakraborty S, Vellarikkal SK, Sivasubbu S, Roy SS, Tandon N and Bharadwaj D. 

Biochem Biophys Res Commun. 522(4):1022‐1029 (2020) 

11. Comparison of plasma adipocytokines & C-reactive protein levels in healthy schoolgoing adolescents from private & government-funded schools of Delhi, India.

Chakraborty S, Prasad G, Marwaha RK, Basu A, Tandon N and Bharadwaj D.

Indian J Med Res. 151(1):47‐58 (2020) 

12. Multifaceted genome-wide study identifies novel regulatory loci in SLC22A11 and ZNF45 for body mass index in Indians.

Giri AK, Prasad G, Bandesh K, Parekatt V, Mahajan A, Banerjee P, Kauser Y, Chakraborty S, Rajashekar D, INDICO, Sharma A, Mathur SK, Basu A, McCarthy MI, Tandon N and Bharadwaj D.

Mol Genet Genomics. 295 (4) 1013-1026 (2020) 

13. Prevalence of vitamin B12 deficiency in healthy Indian school-going adolescents from rural and urban localities and its relationship with various anthropometric indices: a cross-sectional study.

Chakraborty S, Chopra M, Mani K, Giri AK, Banerjee P, Sahni NS, Siddhu A, Tandon N and Bharadwaj D.

J Hum Nutr Diet. 31(4):513‐522 (2018) 

14. DNA methylation profiling reveals the presence of population-specific signatures correlating with phenotypic characteristics.

Giri AK, Bharadwaj S, Banerjee P, Chakraborty S, Parekatt V, Rajashekar D, Tomar A, Ravindran A, Basu A, Tandon N and Bharadwaj D.

Mol Genet Genomics. 292(3):655‐662 (2017) 

15. Genome wide association study of uric acid in Indian population and interaction of identified variants with Type 2 diabetes.

Giri AK, Banerjee P, Chakraborty S, Kauser Y, Undru A, Roy S, Parekatt V, Ghosh S, Tandon N and Bharadwaj D.

Sci Rep. 6:21440 (2016) 

16. Augmentation of the Metformin activity using Pleurotus florida Polysaccharide to control Hyperglycemia in Mice model: A Preliminary Study.

Sultana Z, Chatterjee M, Chakraborty S, Dey P, Paul I, Bankura B, Acharya K and Das M.

Int. J. Pharmtech Res. 6:147-153 (2014) 

Parallel direct isolation and manipulation of mRNA from cultured cells in nanoliter droplets

Levkin PA, Chakraborty S, Popova AA.

EP4186981A1, European Patent application (2023)

1. Advancing Microfluidics and Biomimetic Materials for Miniaturized Cell Screening Platforms: Unleashing Insights into Complex Disease Mechanisms and Personalized Medicine.

Chakraborty S*, Nair JM, Bharadwaj D*.

In: Barciszewski, J. (eds) Systems Biology II. RNA Technologies, vol 15. Springer, Cham, pp 305-360 (2024).

2. Nature Nurtures Life: Intervention of Functional Food in the Management of Metabolic Syndrome.

Giri AK, Medhi SJ, Chakraborty S and Khan NM.

In Martirosyan, DM (Ed.), Introduction to Functional Food Science: Textbook. 2nd Ed. (pp. 298-312), Dallas, TX, Functional Food Center [ISBN-10:1502966735] (2015).

REDUCE: development of a vermicomposting solution for urban household waste (Conference paper).

Aditya A, Bhattacharya A, Singh A, Pande A, Ray A, Ghosh A, Mehani B, Kumar B, Paul D, Suneja G, Bandesh K, Narta K, Teltumbade M, Sarangdhar MA, Dey R, Basu S, Gupta S, Chakraborty S, Nahar S and Pillai B.
Proceedings of the India International Science Festival-Young Scientists’ Meet, Department of Science and Technology, Govt. of India (2015).