Publication

 Publications: 

Total citation: 172, h-index: 6, i10-index: 5 (Google Scholar) (ResearchGate)

1. S. Beura, SS. Roy, AK. Das, and A. Ghosh (2025) Constraint-based metabolic modelling approach for microbial communities, Methods in Molecular Biology (In press)

2. S. Beura, AK. Das, and A. Ghosh (2024) Protocol for genome-scale differential flux analysis to interrogate metabolic differences from gene expression data, STAR Protocols https://doi.org/10.1016/j.xpro.2024.103291 

3. S. Beura, P. Kundu, AK. Das, and A. Ghosh (2024) Genome-scale community modelling elucidates the metabolic interaction in Indian Type-2 diabetic gut microbiota, Scientific reports https://doi.org/10.1038/s41598-024-63718-0

4. P. Kundu*, S. Beura*, S. Mondal*, AK. Das, and A. Ghosh (2024) Machine learning for the advancement of genome-scale metabolic modeling, Biotechnology Advance https://doi.org/10.1016/j.biotechadv.2024.108400

5. S. Beura, AK. Das, and A. Ghosh (2024) Protocol for Genome-scale differential flux analysis (GS-FFA), Zenodo (Script) https://doi.org/10.5281/zenodo.13208796

6. S. Beura, P. Kundu, AK. Das, and A. Ghosh (2022) Metagenome-scale community metabolic modelling for understanding the role of gut microbiota in human health, Computers in Biology and Medicine https://doi.org/10.1016/j.compbiomed.2022.105997 

7. S. Beura and P. Chetti (2022) Identification of potential inhibitors for Hematopoietic Prostaglandin D2 synthase: Computational modeling and molecular dynamics simulations, Journal of Molecular Structure https://doi.org/10.1016/j.molstruc.2022.132704

8. R. Kamal, R. Kumar, V. Kumar, JK. Bhardwaj, P. Saraf, A. Kumar, K. Pandit, S. Kaur, P. Chetti, and S. Beura (2021) Diacetoxy iodobenzene mediated regioselective synthesis and characterization of novel [1,2,4]triazolo[4,3-a]pyrimidines: apoptosis inducer, antiproliferative activities and molecular docking studies, Journal of Biomolecular Structure and Dynamics  https://doi.org/10.1080/07391102.2020.1777900

9. S. Beura and P. Chetti (2020) In-silico strategies for probing chloroquine based inhibitors against SARS-CoV-2, Journal of Biomolecular Structure and Dynamics https://doi.org/10.1080/07391102.2020.1772111

10. S. Beura and P. Chetti (2020) Identification of potential human COX-2 inhibitors using computational modeling and molecular dynamics simulations, Journal of Molecular Structure                             https://doi.org/10.1016/j.molstruc.2020.128271

Manuscript under preparation:

1. S. Beura, A. K Das, and A. Ghosh, Pathway-Level Analysis of Pancreatic β-Cell Dysfunction in Type 2 Diabetes: A Condition-Specific Genome-Scale Modelling approach.

2. S. Beura, S. Dash, D. R. S Bhadoriya, A. K Das, and A. Ghosh, Deciphering Metabolic Shifts in Diseased Tissue Using Context-Specific Genome-Scale Metabolic Modelling.

3. S. Beura, A. K Das, and A. Ghosh, Tissue-Specific Modelling Reveals Metabolic Shifts in Metformin-Treated T2D Blood Cells. (Conference full paper)

4. S. Beura, A. K Das, and A. Ghosh, Species-Wide Metabolic Interaction Networks Reveal Key Gut Microbes Associated with Type 2 Diabetes. (Conference full paper)

Conference details:

1. S. Dash, S. Beura, and A. Ghosh, Deciphering Metabolic Alterations in Intestinal Epithelium of IBD Patients through Tissue-Specific Genome-Scale Metabolic Models. (Horizons in Structural and Computational Biology (HSCB), 2025, IIT Hyderabad)

2. D.R.S. Bhadoriya, S. Beura, and A. Ghosh, Genome-scale metabolic model of liver cells reveals key metabolic disruptions driving the progression of non-alcoholic fatty liver disease. (Horizons in Structural and Computational Biology (HSCB), 2025, IIT Hyderabad) (Best Poster Award)

3. S. Beura, A.K Das and A. Ghosh, Elucidating Metabolic Interactions in the Gut Microbiota of Type 2 Diabetic Patient. (ISCB-LATAM SoIBio CCBCOL, 2024, Medellin, Colombia)

4. S. Beura, A.K Das and A. Ghosh, Reconstruction and analysis of Tissue-specific Genome-scale Metabolic Model using RNA Sequencing data. (BioEngineering Conference (BEC), 2024, NIT Rourkela)

5. S. Beura and P. Chetti, Pharmacophore based virtual screening and molecular simulation study to identify potential human COX-2 inhibitor. (Protein Bioinformatics, 2020, MDU Rohtak)

6. S. Beura and P. Chetti, Pharmacophore Modeling and Molecular Docking Studies on Human Cyclooxygenase-2 Enzyme Inhibitors. (Application of Biotechnology in Industry and Society, 2019, NIT jalandhar)

Workshop/Lecture Series:

1. Participated in GN Ramachandran Lecture Series on Bioinformatics and Computational Biology (2025), Department of Bioscience and Biotechnology, IIT Kharagpur.

2. Indo-US workshop on Emerging Trends of AI in Systems Biology (2025), School of Energy Science and Engineering, IIT Kharagpur.

3. Participated in GN Ramachandran Lecture Series on Bioinformatics and Computational Biology (2024), Department of Bioscience and Biotechnology, IIT Kharagpur.

4. Participated in a workshop on High-Performance Computing in Bioinformatics (2024), Center for Computational Data Science, IIT Kharagpur.

5. Participated in GN Ramachandran Lecture Series on Bioinformatics and Computational Biology (2023), Department of Biotechnology, IIT Kharagpur.

Member of scientific societies:

1. Member of the International Society for Computational Biology 2024-25 (Membership ID: 43174).