DyNoPy allows you to combine inter-residue coevolution analysis with Molecular dynamics simulation data to identify residues critical for biological function. Helpful tutorials on how to get DyNoPy and analyse the data can be found here. 

If you are interested in ready-to-use coevolution matrices and sequence alignments, please drop-by https://pycom.brunel.ac.uk to access the data. Helpful tutorials on how to get and analyse the data can be found here. 

More information will be added soon. For now please refer to my github page.

If you are wondering about how to learn R, click here

• AMBER: www.ambermd.org

• CHARMM-GUI: http://www.charmm-gui.org

• CCMpred: https://github.com/soedinglab/CCMpred

• GROMACS: www.gromacs.org

• PyMOL: https://pymol.org/2/

• PyRosetta: http://www.pyrosetta.org

• VMD: https://www.ks.uiuc.edu/Research/vmd/