2023

• Madon B, David R, Epinoux C, et al.. 2023. Lessons learned and best practices in developing an information system for interdisciplinary, heterogeneous, multidimensional environmental data: the WIBE (Water Interdisciplinary Biology and Ecology) information system. Book Chapter Preprint. https://doi.org/10.5281/zenodo.8140804 

• Specht A, O’Brien M, Edmunds R, Corrêa P, David R, … and Stall, S. 2023. The Value of a Data and Digital Object Management Plan (D(DO)MP) in Fostering Sharing Practices in a Multidisciplinary Multinational Project. Data Sci J, 22: 38, pp. 1–9. https://doi.org/10.5334/dsj-2023-038  

• David R, Burel JM, Heriche JK et al., 2023. Sustainability of FAIR Life Science Resources and Projects: Lessons Learned from EOSC-Life Research Infrastructures. IN PRESS  in EMBO J. PREPRINT.  https://doi.org/10.5281/zenodo.8059831  

• David R, Richard AS, Connellan C et al.. 2023. Umbrella Data Management Plans to integrate FAIR data : lessons from the ISIDORe and BY-COVID consortia for pandemic preparedness. In special ed. Data Management Planning across Disciplines and Infrastructures. Data Sci J, 22: 35, pp. 1–15; https://doi.org/134/dsj-2023-0350.53  

• Madon B, David R, Torralba A, Jung A et al, 2023. A review of biodiversity research in ports: Let’s not overlook everyday nature! Ocean & Coastal Management 242, 106623. https://doi.org/10.1016/j.ocecoaman.2023.106623   

2022

• Mark D. Wilkinson, Susanna-Assunta Sansone, Eva Méndez, Romain David, Richard Dennis, David Hecker, Mari Kleemola, Carlo Lacagnina, Anastasija Nikiforova, & Leyla Jael Castro. (2022). Community-driven Governance of FAIRness Assessment: An Open Issue, an Open Discussion (Submitted in Open Research Europe, 2(146), 146.). Zenodo. https://doi.org/10.5281/zenodo.7390482 - First Version Published: 23 Dec 2022, 2:146 https://doi.org/10.12688/openreseurope.15364.1

• Romain David, Christian Ohmann, Jan-Willem Boiten, et al., An iterative and interdisciplinary categorisation process towards FAIRer digital resources for sensitive life-sciences data, Scientific Report, 2022, 12, 20989. https://doi.org/10.1038/s41598-022-25278-z 

• Jeaneth Machicao, Alison Specht, Danton Vellenich, Leandro Meneguzzi, Romain David, et al.. A Deep-Learning Method for the Prediction of Socio-Economic Indicators from Street-View Imagery Using a Case Study from Brazil. CODATA Data Science Journal, 2022, 21, ⟨10.5334/dsj-2022-006⟩. ⟨hal-03663799⟩ 

• Jeaneth Machicao, Imed Riadh Farah, Leonardo Meneguzzi, Corrêa Pedro Luiz Pizzigatti, Alison Specht, et al.. Mitigation Strategies to Improve Reproducibility of Poverty Estimations From Remote Sensing Images Using Deep Learning. Earth and Space Science, 2022, 9 (8), pp.e2022EA002379. ⟨10.1029/2022ea002379⟩. ⟨hal-03761874⟩ 

• Christian Ohmann, Romain David, Mónica Cano Abadia, Florence Bietrix, Jan-Willem Boiten, et al.. Pilot Study on the Intercalibration of a Categorisation System for FAIRer Digital Objects Related to Sensitive Data in the Life Sciences. Journal of Data Intelligence, 2022, 4 (2), pp.196 - 211. ⟨10.1162/dint_a_00126⟩. ⟨hal-03663699⟩ 

2021

• Brian Pickering, Timea Biro, Claire Austin, Alexander Bernier, Louise Bezuidenhout, et al.. Radical collaboration during a global health emergency: development of the RDA COVID-19 data sharing recommendations and guidelines. Open Research Europe, 2021, 1, pp.69. ⟨10.12688/openreseurope.13369.1⟩. ⟨hal-03663823⟩ 

• Lorraine Coché, Elie Arnaud, Laurent Bouveret, Romain David, Eric Foulquier, et al.. Kakila database: Towards a FAIR community approved database of cetacean presence in the waters of the Guadeloupe Archipelago, based on citizen science. Biodiversity Data Journal, 2021, 9, pp.e69022. ⟨10.3897/bdj.9.e69022⟩. ⟨hal-03299950⟩ 

2020

• Melih Ertan Çinar, Jean-Pierre Féral, Christos Arvanitidis, Romain David, Ergün Taşkin, et al.. Coralligenous assemblages along their geographical distribution: Testing of concepts and implications for management. Aquatic Conservation: Marine and Freshwater Ecosystems, 2020, 30, pp.1578 - 1594. ⟨10.1002/aqc.3365⟩. ⟨hal-02892573⟩ 

• Daniel Jacob, Romain David, Sophie Aubin, Yves Gibon. Making experimental data tables in the life sciences more FAIR: a pragmatic approach. GigaScience, 2020, 9 (12), pp.giaa144. ⟨10.1093/gigascience/giaa144⟩. ⟨hal-02883355v4⟩ 

• Romain David, Laurence Mabile, Alison Specht, Sarah Stryeck, Mogens Thomsen, et al.. FAIRness Literacy: The Achilles’ Heel of Applying FAIR Principles. CODATA Data Science Journal, 2020, 19 (32), pp.1-11. ⟨10.5334/dsj-2020-032⟩. ⟨hal-02483307v2⟩ 

• Caterina Caracciolo, Sophie Aubin, Clement Jonquet, Emna Amdouni, Romain David, et al.. 39 Hints to Facilitate the Use of Semantics for Data on Agriculture and Nutrition. CODATA Data Science Journal, 2020, 19 (1), ⟨10.5334/dsj-2020-047⟩. ⟨hal-03059376⟩ 

• J.K. Pearman, G. Chust, E. Aylagas, E. Villarino, J.R. Watson, et al.. Pan‐regional marine benthic cryptobiome biodiversity patterns revealed by metabarcoding Autonomous Reef Monitoring Structures. Molecular Ecology, 2020, 29, pp.4882-4897. ⟨10.1111/mec.15692⟩. ⟨hal-02973058⟩ 

2019

• Laure Thierry de Ville d'Avray, Dominique Ami, A. Chenuil, Romain David, Jean-Pierre F eral. Application of the ecosystem service concept at a small-scale: The cases of coralligenous habitats in the North-western Mediterranean Sea. Marine Pollution Bulletin, 2019, 138, pp.160-170. ⟨10.1016/j.marpolbul.2018.10.057⟩. ⟨hal-01933094⟩ 

• Aurelien de Jode, Romain David, Anne Haguenauer, Abigail Cahill, Zinovia Erga, et al.. From seascape ecology to population genomics and back. Spatial and ecological differentiation among cryptic species of the red algae Lithophyllum stictiforme/L. cabiochiae, main bioconstructors of coralligenous habitats. Molecular Phylogenetics and Evolution, 2019, 137, pp.104-113. ⟨10.1016/j.ympev.2019.04.005⟩. ⟨hal-02125817⟩ 

• Romain David, Maria Uyarra, Susana Carvalho, Holger Anlauf, Angel Borja, et al.. Lessons from photo analyses of Autonomous Reef Monitoring Structures as tools to detect (bio-)geographical, spatial, and environmental effects. Marine Pollution Bulletin, 2019, 141, pp.420-429. ⟨10.1016/j.marpolbul.2019.02.066⟩. ⟨hal-02061256⟩ 

2018 and before

• Abigail Cahill, John K Pearman, Angel Borja, Laura Carugati, Susana Carvalho, et al.. A comparative analysis of metabarcoding and morphology-based identification of benthic communities across different regional seas. Ecology and Evolution, 2018, 8 (17), pp.8908-8920. ⟨10.1002/ece3.4283⟩. ⟨hal-01886882⟩ 

• Abigail E. Cahill, Aurelien de Jode, Sophie Dubois, Zoheir Bouzaza, D. Aurelle, et al.. A multispecies approach reveals hot spots and cold spots of diversity and connectivity in invertebrate species with contrasting dispersal modes. Molecular Ecology, 2017, 26 (23), pp.6563-6577. ⟨10.1111/mec.14389⟩. ⟨hal-01681650⟩ 

• Stéphane Sartoretto, Thomas Schohn, Carlo Nike Bianchi, Carla Morri, Joaquim Garrabou, et al.. An integrated method to evaluate and monitor the conservation state of coralligenous habitats: The INDEX-COR approach. Marine Pollution Bulletin, 2017, 120 (1-2), pp.222-231. ⟨10.1016/j.marpolbul.2017.05.020⟩. ⟨hal-01541141⟩ 

• Romain David, Jean-Pierre Féral, Sophie Archambeau, Fanny Arnaud, David Auber, et al.. IndexMEED cases studies using "Omics" data with graph theory. Biodiversity Information Science and Standards, 2017, TDWG 2017 - Proceedings, 1 (2), pp.340-361. ⟨10.3897/tdwgproceedings.1.20740⟩. ⟨hal-01761535⟩ 

• Romain David, Loup Bernard, Cyrille Blanpain, Alrick Dias, Jean-Pierre F eral, et al.. Visualisation de données sous forme de graphes en archéologie. Rencontre opérationnelle des archéologues d’ArkeoGIS et des écologues d’IndexMed . Digital Archaeology, 2017, 17-1 (1). ⟨10.21494/ISTE.OP.2017.0166⟩  ⟨hal-01617580⟩ 

• Roberto Danovaro, Laura Carugati, Berzano Marco, Abigail E. Cahill, Susana de Carvalho Spinola, et al.. Implementing and Innovating Marine Monitoring Approaches for Assessing Marine Environmental Status.. Frontiers in Marine Science, 2016, 3, pp.213. ⟨10.3389/fmars.2016.00213⟩. ⟨hal-01448726⟩ 

• Vasilis Gerovasileiou, Thanos Dailianis, Emmanouela Panteri, Nikitas Michalakis, Giulia Gatti, et al.. CIGESMED for divers: Establishing a citizen science initiative for the mapping and monitoring of coralligenous assemblages in the Mediterranean Sea. Biodiversity Data Journal, 2016, 54 (e8692), ⟨10.3897/BDJ.4.e8692⟩. ⟨hal-01392025⟩