MatLab

Nearly all of the single-particle fluorescence burst spectroscopy (BAS) is coded in MatLab

Both single and dual color particle distribtion analysis based on distribution of intensity burst amplitudes and coincidence information

• • mcBAS multi-color BAS

  • cBAS a method to extend the dynamic range of BAS measurements

  • TentSim A simulation and analysis wrapper for the above methods

Tensorflow

Multiple summer students have been building a new CNN image recognition code through Tensorflow.

NetLogo and Mesa (python)

An agent-based modeling libraries used to simulate emergent behavior in aggregation and disaggregation dynamics

Used by my summer REU students

COMSOL

Level set method to explore surface interfaces in bump arrays; Particle tracing in microfluidic channels