Population Genomics

Photo curtesy of JR Ancheta, UAF URSA!

(Photo: GI1088-75)

Population Structure and Genomic Diversity in the Eastern Bering Sea

Project Overview

Pacific herring spawning in British Columbia

(Photo: Rebecca Benjamin-Carey, CHI) 

The Background Info:


While there are significant stocks of herring throughout the eastern Bering Sea, not much is known about the genetic structure of these stocks. Determining if these different stocks are genetically distinct from one another is an important research topic that can help inform fisheries management decisions. Genetic diversity is an imperative feature to monitor to keep herring populations healthy.


The Research Question:


What is the geographic distribution of genomic diversity of Pacific herring in the eastern Bering Sea?


The How:

With the help from NOAA and Alaska Department of Fish and Game, herring samples from all around the Bering Sea will be used to build a robust collection of herring genetic information. The use of modern genomic techniques will produce detailed information about the whole herring genome, which hasn’t been done before in the eastern Bering Sea!


The Why:


Herring is critical to Alaska in many ways. Better understanding their genomic variability will help fisheries managers make well-informed decisions about herring stocks in the Bering Sea. Knowing more about the population structure of herring can also help managers predict how herring populations will change to environmental changes.



Herring People serigraph series by April White 

Current Progress

Map of sampled locations

Sample Acquisition (complete!)

Samples have been collected from NOAA trawl surveys and Alaska Department of Fish and Game spawning surveys. Additional samples from NMFS observers in the pollock fishery were also sampled. The total number of samples collected is over 1,600!



Sample Processing 

(complete!)

After receiving frozen herring samples, each fish is measured, weighted, and sexed if applicable. A tissue sample is taken from each fish for genetic analysis. Scale samples are taken to age the fish. Pictured right is a time lapse of herring samples being processed. 

Boxes and boxes of tissue samples

DNA Extractions and Quality Checks 

(complete!)

After DNA is extracted from each tissue sample, library preparation for reduced representation sequencing and low coverage whole genome sequencing will begin. 

Next Steps:



(Photo: JR Ancheta, GI1088-103)

AFS Poster Presentation

Presented at the annual Alaska AFS meeting (2023)

Won best MS poster!

Support Provided By:

G-5041