Publications

For an exhaustive and complete list of our publications, please follow those links :

• Google scholar

• Pubmed

• ResearchGate

List of publications :

1. J Philion, L Laflamme-Michaud, DE Santschi, ÉR Paquet, É Charbonneau. Impact of the amount of milk replacer offers to Holstein dairy heifers on pre-and postweaning growth, Animal-Open Space, 3, 100081, 2024

2. F Huot, S Claveau, A Bunel, D Warner, DE Santschi, R Gervais, ER Paquet. Predicting subacute ruminal acidosis from milk mid-infrared estimated fatty acids and machine learning on Canadian commercial dairy herds. Journal of Dairy Science, 107 (11), 9504-9515, 2024

3. Chancy Anaïs, Santschi Débora E, Paquet Éric R; Renaud David L, Gauthier Marie-Lou, Charbonneau Édith, Barbeau-Grégoire Nicolas, Van Driessche Laura, Buczinski Sébastien. Standardization and validation of ATP luminometry as a diagnostic tool to assess the cleanliness of feeding equipment in preweaning calves, Journal of Dairy Science, 106,9,6263-6274,2023

4. Van Driessche Laura, Santschi Débora E, Paquet Éric, Renaud David, Charbonneau Édith, Gauthier Marie-Lou, Chancy Anaïs, Barbeau-Grégoire Nicolas, Buczinski Sébastien. Hygiene management practices and adenosine triphosphate luminometry of feeding equipment in preweaning calves on dairy farms in Quebec Canada. Journal of Dairy Science, 106,12,8885-8896,2023,Elsevier

5. Wang Pengmin, Paquet Éric R, Robert Claude. Comprehensive transcriptomic analysis of long non-coding RNAs in bovine ovarian follicles and early embryos, Plos one, 18,9,e0291761,2023

6. Fadul-Pacheco Liliana, Vincent Antony T, Paquet Eric R. Integrative systems biology and big data for agricultural improvement and understanding, Frontiers in Systems Biology, 3,1347323,2023

7. Van Driessche Laura, Santschi Débora E, Paquet Éric, Renaud David L, Charbonneau Édith, Gauthier Marie-Lou, Steele Michael A, Chancy Anaïs, Barbeau-Grégoire Nicolas, Buczinski Sébastien, Association between ATP luminometry of feeding equipment and environmental and health parameters of preweaned calves on dairy farms., Journal of Dairy Science, 2024

8. Felix Huot, Stéphanie Claveau, Audrey Bunel, Debora Santschi, Rachel Gervais, Éric R Paquet. Relationship between farm management strategies, reticuloruminal pH variations, and risks of subacute ruminal acidosis. Journal of Dairy Science, 2023. link

9. Van Driessche, Laura, Santschi, Débora, Paquet, ER, Renaud, David, Charbonneau, Edith, Gauthier, Marie-Lou, Chancy, Anais, Barbeau-Grégoire, Nicolas, Buczinski, Sébastien. Hygiene management practices and ATP luminometry of feeding equipment in preweaned calves on dairy farms in Quebec, Canada. Journal of Dairy Science, 2023

10. Van Driessche, Laura, Santschi, Débora, Paquet, ER, Renaud, David, Charbonneau, Edith, Gauthier, Marie-Lou, Chancy, Anais, Barbeau-Grégoire, Nicolas, Buczinski, Sébastien. Hygiene management practices and ATP luminometry of feeding equipment in preweaned calves on dairy farms in Quebec, Canada. Journal of Dairy Science, 2023

11. Sudarshan et al. Recurrent chromosomal translocations in sarcomas create a megacomplex that mislocalizes NuA4/TIP60 to Polycomb target loci. Genes & Development, 2022. link

12. Colas Droin, Eric R. Paquet*, and Felix Naef. Low-dimensional dynamics of two coupled biological oscillators. Nature Physics, 2019, link. News and Views.

13. Andrea Manfrin, Yoji Tabata, Eric R Paquet, Ambroise Vuaridel, Felix Naef, and Matthias Lutolf. Engineered signaling centers for the spatiotemporally controlled patterning of human embryonic stem cells. Nature Methods, 2019, (link).

14. Emmanuelle Gouot, Wajid Bhat, Anne Rufiange, Eric Fournier, Eric R. Paquet, and Amine Nourani. Casein kinase 2 mediated phosphorylation of spt6 modulates histone dynamics and regulates spurious transcription. Nucleic acids research, 2018.

15. Andrea Alber, Eric R. Paquet*, Martina Biserni, Felix Naef, and David Suter. Single live cell monitoring of protein turnover reveals intercellular variability and cell cycle dependence of degradation rates. Molecular Cell, 2018, (link).

16. Kimbung Siker, Markholm Ida, Bjohle Judith, Lekberg Tobias, von Wachenfeldt Anna, Azavedo Edward, Saracco Ariel, Soderberg Martin, Hellstrom Mats, Veerla Srinivas, Eric R Paquet, et al. Assessment of early response biomarkers in relation to long-term survival in patients with her2-negative breast cancer treated with neoadjuvant chemotherapy plus bevacizumab: results from the phase 2 promix trial. International journal of cancer, 2017.

17. Eric R. Paquet*, Robert Lesurf, Ali Tofigh, Vanessa Dumeaux, and Mike Hallett. Detecting gene signature activation in breast cancer in an absolute, single-patient manner. Breast Cancer Research, 19(32), 2017.

18. Brandi Sharp, Eric R Paquet, Felix Naef, Akanksha Bafna, and Herman Wijnen. A new promoter element associated with daily time keeping in drosophila. Nucleic acids research, 2017.

19. Anne-Lise Steunou, Myriam Cramet, Dorine Rossetto, Maria J Aristizabal, Nicolas Lacoste, Simon Drouin, Valérie Coté, Eric R Paquet, Rhea T Utley, Nevan Krogan, et al. Combined action of histone reader modules regulates nua4 local acetyltransferase function but not its recruitment on the genome. Molecular and Cellular Biology, 36(22):2768–2781, 2016.

20. Karine Jacquet, Amélie Fradet-Turcotte, Nikita Avvakumov, Jean-Philippe Lambert, Céline Roques, Raj K Pandita, Eric R Paquet, Pauline Herst, Anne-Claude Gingras, Tej K Pandita, et al. The tip60 complex regulates bivalent chromatin recognition by 53bp1 through direct h4k20me binding and h2ak15 acetylation. Molecular cell, 62(3):409–421, 2016.

21. Lucie Aumailley, Alessandra Warren, Chantal Garand, Marie Julie Dubois, Eric R Paquet, David G Le Cou- teur, André Marette, Victoria C Cogger, and Michel Lebel. Vitamin c modulates the metabolic and cy- tokine profiles, alleviates hepatic endoplasmic reticulum stress, and increases the life span of gulo-/- mice. Aging (Albany NY), 8(3):458, 2016.

22. Eric R. Paquet*, Jing Cui, David Davidson, Natalia Pietrosemoli, Houssein H Hassan, Serges P Tsofack, Annie Maltais, Michael T Hallett, Mauro Delorenzi, Gerald Batist, Raquel Aloyz, and Michel Lebel. A 12-gene signature associated with prognosis and benefit from 5-fluorouracil in colon cancer. The journal of Pathology, 2015.

23. Yunpeng Feng, Arsenios Vlassis, Céline Roques, Marie-Eve Lalonde, Cristina Gonzalez-Aguilera, Jean-Philippe Lambert, Sung-Bau Lee, Xiaobei Zhao, Constance Alabert, Jens V Johansen, Eric R Paquet, et al. Brpf3-hbo1 regulates replication origin activation and histone h3k14 acetylation. The EMBO journal, page e201591293, 2015.

24. Xue Cheng, Andréanne Auger, Mohammed Altaf, Simon Drouin, Eric R Paquet, Rhea T Utley, Franc ̧ois Robert, and Jacques Côté. Eaf1 links the nua4 histone acetyltransferase complex to htz1 incorporation and regulation of purine biosynthesis. Eukaryotic cell, 14(6):535–544, 2015.         

25. Eric R Paquet*, Hélène Hovington, Hervé Brisson, Cédric Lacombe, Hélène Larue, Bernard Tˆetu, Louis Lacombe, Yves Fradet, and Michel Lebel. Low level of the x-linked ribosomal protein s4 in human urothelial carcinomas is associated with a poor prognosis. Biomarkers in Medicine, 9(3):187–197, 2015.

26. Oussama Meziane, Sandra Piquet, Gabriel D Bossé, Dominic Gagné, Eric R Paquet, Claude Robert, Michael A Tones, and Martin J Simard. The human decapping scavenger enzyme dcps modulates microrna turnover. Scientific reports, 5, 2015.

27. Vladimir Gelev, Janice M Zabolotny, Martin Lange, Makoto Hiromura, Sang Wook Yoo, Joseph S Orlando, Anna Kushnir, Nobuo Horikoshi, Eric R Paquet, Dimcho Bachvarov, et al. A new paradigm for transcription factor tfiib functionality. Scientific reports, 4, 2014.

28. Eric R Paquet* and Mike T Hallett. Absolute assignment of breast cancer intrinsic molecular subtype. JNCI, 107(1):dju357, 2015.

29. Nourdine Hamdane, Victor Y Stefanovsky, Michel G Tremblay, Attila Németh, Eric R Paquet, Frédéric Lessard, Elaine Sanij, Ross Hannan, and Tom Moss. Conditional inactivation of upstream binding factor reveals its epigenetic functions and the existence of a somatic nucleolar precursor body. PLoS genetics, 10(8):e1004505, 2014.

30. Marie-Michelle Genois, Eric R Paquet, Marie-Claude N Laffitte, Ranjan Maity, Amélie Rodrigue, Marc Ouel- lette, and Jean-Yves Masson. Dna repair pathways in trypanosomatids: from dna repair to drug resistance. Microbiology and Molecular Biology Reviews, 78(1):40–73, 2014.

31. Jean-Philippe Brosseau, Jean-François Lucier, Andrée-Anne Lamarche, Lulzim Shkreta, Daniel Gendron, Elvy Lapointe, Philippe Thibault, Eric R Paquet, Jean-Pierre Perreault, Sherif Abou Elela, et al. Redirecting splicing with bifunctional oligonucleotides. Nucleic acids research, 42(6):e40–e40, 2014.

32. Ali Tofigh, Matthew Suderman, Eric R Paquet, Julie Livingstone, Nicholas Bertos, Sadiq M Saleh, Hong Zhao, Margarita Souleimanova, Sean Cory, Robert Lesurf, et al. The prognostic ease and difficulty of invasive breast carcinoma. Cell reports, 2014.

33. Marie-Eve Lalonde, Nikita Avvakumov, Karen C Glass, France-Hélène Joncas, Nehmé Saksouk, Michael Holli- day, Eric R Paquet, Kezhi Yan, Qiong Tong, Brianna J Klein, et al. Exchange of associated factors directs a switch in hbo1 acetyltransferase histone tail specificity. Genes & dev, 27(18):2009–2024, 2013.

34. Mamadou Keita, Zhi-Qiang Wang, Jean-Francois Pelletier, Magdalena Bachvarova, Marie Plante, Jean Gregoire, Marie-Claude Renaud, Anne-Marie Mes-Masson, Eric R Paquet, and Dimcho Bachvarov. Global methylation profiling in serous ovarian cancer is indicative for distinct aberrant dna methylation signatures associated with tumor aggressiveness and disease progression. Gynecologic oncology, 128(2):356–363, 2013.

35. Torsten H Nielsen, Nathalie Johnson, Nicolas Garnier, Stanley Kwan, Lu Yao, Eftihia Cocolakis, Josée Hébert, Robert A Morgan, Eric Paquet, Kevin P Callahan, et al. Monitoring response and resistance to the novel arsenical darinaparsin in an aml patient. Frontiers in pharmacology, 4, 2013.

36. Zuanel Diaz, Adriana Aguilar-Mahecha, Eric R Paquet*, Mark Basik, Michèle Orain, Errol Camlioglu, André Constantin, Naciba Benlimame, Dimcho Bachvarov, Guillaume Jannot, et al. Next-generation biobanking of metastases to enable multidimensional molecular profiling in personalized medicine. Modern Pathology, 26(11):1413–1424, 2013.

37. Anne-Laure Pin, Franc ̧ois Houle, Patrick Fournier, Maeva Guillonneau, Eric R Paquet, Martin J Simard, Isabelle Royal, and Jacques Huot. Annexin-1-mediated endothelial cell migration and angiogen- esis are regulated by vascular endothelial growth factor (vegf)-induced inhibition of mir-196a expression. Journal of Biological Chemistry, 287(36):30541–30551, 2012.

38. Nikita Avvakumov, Marie-Eve Lalonde, Nehmé Saksouk, Eric R Paquet, Karen C Glass, Anne-Julie Landry, Yannick Doyon, Christelle Cayrou, Geneviève A Robitaille, Darren E Richard, et al. Conserved molecular interac- tions within the hbo1 acetyltransferase complexes regulate cell proliferation. Molecular and cellular biology, 32(3):689–703, 2012.

39. Alexandra Dallaire, Chantal Garand, Eric R Paquet, Sarah J Mitchell, Rafael de Cabo, Martin J Simard, and Michel Lebel. Down regulation of mir-124 in both werner syndrome dna helicase mutant mice and mutant caenorhabditis elegans wrn-1 reveals the importance of this microrna in accelerated aging. Aging (Albany NY), 4(9):636–647, 2012.

40. Marie-Michelle Genois, Angana Mukherjee, Jean-Michel Ubeda, Rémi Buisson, Eric R Paquet, Gaétan Roy, Marie Plourde, Yan Coulombe, Marc Ouellette, and Jean-Yves Masson. Interactions between brca2 and rad51 for promoting homologous recombination in leishmania infantum. Nucleic acids research, 40(14):6570–6584, 2012.

41. Anne-Laure Pin, Franc ̧ois Houle, Maeva Guillonneau, Eric R Paquet, Martin J Simard, and Jacques Huot. mir-20a represses endothelial cell migration by targeting mkk3 and inhibiting p38 map kinase activation in response to vegf. Angiogenesis, 15(4):593–608, 2012.

42. Jean-Philippe Gagné, Emilie Pic, Maxim Isabelle, Jana Krietsch, Chantal Ethier, Eric R Paquet, Isabelle Kelly, Michel Boutin, Kyung-Mee Moon, Leonard J Foster, et al. Quantitative proteomics profiling of the poly (adp-ribose)-related response to genotoxic stress. Nucleic acids research, page 486, 2012.

43. Syed Irfan Ahmad Bukhari, Alejandro Vasquez-Rifo, Dominic Gagné, Eric R Paquet, Monique Zetka, Claude Robert, Jean-Yves Masson, and Martin J Simard. The microrna pathway controls germ cell proliferation and differentiation in c. elegans. Cell research, 22(6):1034–1045, 2012.

44. Michèle Rouleau, Vishal Saxena, Amélie Rodrigue, Eric R Paquet, Abbie Gagnon, Michael J Hendzel, Jean- Yves Masson, Marc Ekker, and Guy G Poirier. A key role for poly (adp-ribose) polymerase 3 in ectodermal specification and neural crest development. PloS one, 6(1):e15834, 2011.

45. Claude Robert, Julie Nieminen, Isabelle Dufort, Dominic Gagné, Jason R Grant, Gael Cagnone, Dany Plourde, Anne-Laure Nivet, Eric Fournier, Eric R Paquet, et al. Combining resources to obtain a comprehensive survey of the bovine embryo transcriptome through deep sequencing and microarrays. Molecular reproduction and development, 78(9):651–664, 2011.

46. Adam Labbé, Chantal Garand, Victoria C Cogger, Eric R Paquet, Myriam Desbiens, David G Le Couteur, and Michel Lebel. Resveratrol improves insulin resistance hyperglycemia and hepatosteatosis but not hypertriglyc- eridemia, inflammation, and life span in a mouse model for werner syndrome. The Journals of Gerontology, 66(3):264–278, 2011.

47. Audrey Courboulin, Roxane Paulin, Nellie J Giguère, Nehmé Saksouk, Tanya Perreault, Jolyane Meloche, Eric R Paquet, Sabrina Biardel, Steeve Provencher, Jacques Côté, et al. Role for mir-204 in human pulmonary arterial hypertension. The Journal of experimental medicine, 208(3):535–548, 2011.

48. Nicolas Porquet, Andrée Poirier, Franc ̧ois Houle, Anne-Laure Pin, Stéphanie Gout, Pierre-Luc Tremblay, Eric R Paquet, Roscoe Klinck, Franc ̧ois A Auger, and Jacques Huot. Survival advantages conferred to colon cancer cells by e-selectin-induced activation of the pi3k-nfκb survival axis downstream of death receptor-3. BMC cancer, 11(1):285, 2011.

49. Adam Labbé, Ramachander VN Turaga, Eric R Paquet, Chantal Garand, and Michel Lebel. Expression profiling of mouse embryonic fibroblasts with a deletion in the helicase domain of the werner syndrome gene homologue treated with hydrogen peroxide. BMC genomics, 11(1):127, 2010.

50. Laurent Massip, Chantal Garand, Eric R Paquet, Victoria C Cogger, Jennifer N O’Reilly, Leslee Tworek, Avril Hatherell, Carla G Taylor, Eric Thorin, Peter Zahradka, et al. Vitamin c restores healthy aging in a mouse model for werner syndrome. The FASEB Journal, 24(1):158–172, 2010.

51. Nehmé Saksouk, Nikita Avvakumov, Karen S Champagne, Tiffany Hung, Yannick Doyon, Christelle Cayrou, Eric R Paquet, Mukta Ullah, Anne-Julie Landry, Valérie Côté, et al. Hbo1 hat complexes target chromatin throughout gene coding regions via multiple phd finger interactions with histone h3 tail. Molecular cell, 33(2):257–265, 2009.

52. Ramachander VN Turaga, Eric R Paquet, Mari Sild, Julien Vignard, Chantal Garand, F Brad Johnson, Jean-Yves Masson, and Michel Lebel. The werner syndrome protein affects the expression of genes involved in adipogenesis and inflammation in addition to cell cycle and dna damage responses. Cell cycle, 8(13):2080–2092, 2009.

53. Lulzim Shkreta, Ulrike Froehlich, Eric R Paquet, Johanne Toutant, Sherif Abou Elela, and Benoit Chabot. Anticancer drugs affect the alternative splicing of bcl-x and other human apoptotic genes. Molecular cancer therapeutics, 7(6):1398–1409, 2008.

54. Mickael Ploquin, Ali Bransi, Eric R Paquet, Alicja Z Stasiak, Andrzej Stasiak, Xiong Yu, Anna M Cies- linska, Edward H Egelman, Sylvain Moineau, and Jean-Yves Masson. Functional and structural basis for a bacteriophage homolog of human rad52. Current Biology, 18(15):1142–1146, 2008.

55. Eric R Paquet*, Guillaume Rey, and Felix Naef. Modeling an evolutionary conserved circadian cis-element. PLoS computational biology, 4(2):e38, 2008.

56. Roscoe Klinck, Anne Bramard, Lyna Inkel, Geneviève Dufresne-Martin, Julien Gervais-Bird, Richard Madden, Eric R Paquet, ChuShin Koh, Julian P Venables, Panagiotis Prinos, et al. Multiple alternative splicing markers for ovarian cancer. Cancer research, 68(3):657–663, 2008.

57. Julian P Venables, Chu-Shin Koh, Ulrike Froehlich, Elvy Lapointe, Sonia Couture, Lyna Inkel, Anne Bramard, Eric R Paquet, Valérie Watier, Mathieu Durand, et al. Multiple and specific mrna processing targets for the major human hnrnp proteins. Molecular and cellular biology, 28(19):6033–6043, 2008.

58. David Imbeault, Lynda Gamar, Anne Rufiange, Eric R Paquet, and Amine Nourani. The rtt106 histone chap- erone is functionally linked to transcription elongation and is involved in the regulation of spurious transcription from cryptic promoters in yeast. Journal of Biological Chemistry, 283(41):27350–27354, 2008.

59. David Guay, Audrey-Ann Evoy, Eric R Paquet, Chantal Garand, Magdalena Bachvarova, Dimcho Bachvarov, and Michel Lebel. The strand separation and nuclease activities associated with yb-1 are dispensable for cisplatin resistance but overexpression of yb-1 in mcf7 and mda-mb-231 breast tumor cells generates several chemoresistance signatures. Int. J. Biochem. Cell Biol., 40(11):2492–2507, 2008.